mRNA_S-dermatodea_contig80142.16201.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80142.16201.1
Unique NamemRNA_S-dermatodea_contig80142.16201.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80142.16201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80142contigS-dermatodea_contig80142:2..373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80142.16201.1prot_S-dermatodea_contig80142.16201.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80142 18..329 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925314.3454258-UTR-S-dermatodea_contig80142:1..171622925314.3454258-UTR-S-dermatodea_contig80142:1..17Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig80142 2..17 +
1694079849.0370142-UTR-S-dermatodea_contig80142:1..171694079849.0370142-UTR-S-dermatodea_contig80142:1..17Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig80142 2..17 +
1622925314.369965-UTR-S-dermatodea_contig80142:329..3731622925314.369965-UTR-S-dermatodea_contig80142:329..373Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig80142 330..373 +
1694079849.0557854-UTR-S-dermatodea_contig80142:329..3731694079849.0557854-UTR-S-dermatodea_contig80142:329..373Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig80142 330..373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925314.3568957-CDS-S-dermatodea_contig80142:17..3291622925314.3568957-CDS-S-dermatodea_contig80142:17..329Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80142 18..329 +
1694079849.0448194-CDS-S-dermatodea_contig80142:17..3291694079849.0448194-CDS-S-dermatodea_contig80142:17..329Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80142 18..329 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80142.16201.1

>prot_S-dermatodea_contig80142.16201.1 ID=prot_S-dermatodea_contig80142.16201.1|Name=mRNA_S-dermatodea_contig80142.16201.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=104bp
MPIGYTCANQSNQINQKVNDWRHCLLCGSTQHFRQSAYTASRCRFFMKIS
SVSCRSRYHVGIIVCGWLLDSFFLVVCVNAYLRWGSVCMLCCVPLLRPRG
GSD*
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mRNA from alignment at S-dermatodea_contig80142:2..373+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80142.16201.1 ID=mRNA_S-dermatodea_contig80142.16201.1|Name=mRNA_S-dermatodea_contig80142.16201.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=372bp|location=Sequence derived from alignment at S-dermatodea_contig80142:2..373+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAAGTCGGGTCGGATTATGCCGATCGGCTATACGTGTGCAAATCAATCAA
ATCAAATCAATCAAAAAGTAAATGACTGGCGACACTGCTTGCTGTGTGGA
TCTACGCAGCACTTCAGACAGAGTGCATACACGGCTTCGAGATGTCGGTT
TTTTATGAAGATTTCTTCTGTAAGTTGTCGTTCTAGGTATCATGTTGGGA
TTATCGTTTGTGGCTGGCTCTTGGATAGTTTTTTTCTCGTCGTGTGTGTG
AATGCCTATTTACGGTGGGGTTCCGTGTGTATGCTATGCTGTGTACCTCT
TTTGCGACCACGAGGAGGATCGGATTAGAGACGCCGATCGGCTGCATGTG
TGATAAAACAACAATAATAATC
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Coding sequence (CDS) from alignment at S-dermatodea_contig80142:2..373+

>mRNA_S-dermatodea_contig80142.16201.1 ID=mRNA_S-dermatodea_contig80142.16201.1|Name=mRNA_S-dermatodea_contig80142.16201.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at S-dermatodea_contig80142:2..373+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGATCGGCTATACGTGTGCAAATCAATCAAATCAAATCAATCAAAA
AGTAAATGACTGGCGACACTGCTTGCTGTGTGGATCTACGCAGCACTTCA
GACAGAGTGCATACACGGCTTCGAGATGTCGGTTTTTTATGAAGATTTCT
TCTGTAAGTTGTCGTTCTAGGTATCATGTTGGGATTATCGTTTGTGGCTG
GCTCTTGGATAGTTTTTTTCTCGTCGTGTGTGTGAATGCCTATTTACGGT
GGGGTTCCGTGTGTATGCTATGCTGTGTACCTCTTTTGCGACCACGAGGA
GGATCGGATTAGATGCCGATCGGCTATACGTGTGCAAATCAATCAAATCA
AATCAATCAAAAAGTAAATGACTGGCGACACTGCTTGCTGTGTGGATCTA
CGCAGCACTTCAGACAGAGTGCATACACGGCTTCGAGATGTCGGTTTTTT
ATGAAGATTTCTTCTGTAAGTTGTCGTTCTAGGTATCATGTTGGGATTAT
CGTTTGTGGCTGGCTCTTGGATAGTTTTTTTCTCGTCGTGTGTGTGAATG
CCTATTTACGGTGGGGTTCCGTGTGTATGCTATGCTGTGTACCTCTTTTG
CGACCACGAGGAGGATCGGATTAG
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