mRNA_S-dermatodea_contig8011.16198.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8011.16198.1
Unique NamemRNA_S-dermatodea_contig8011.16198.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: D7FZ49_ECTSI (NAD-dependent epimerase/dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ49_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 2.510e-13
Identity = 64/164 (39.02%), Postives = 84/164 (51.22%), Query Frame = 1
Query:    7 RRVVITGGLGLLGRRILRDIFSTRHGRGHEAAARVLVVDHED--------------DLGGD-----------LSSDLER--------DGMADAVSFVGGNFATAEVASAIKKFASGGAGAAGGAG------LSVFHLASVMSGQGESDFDQALHVNVEGKRGVL 381
            ++ V++GGLGLLG+RIL+ I S+ HG       RV++VD                  + GD           L S   R        D    AVS V G+ ++++VA+AIK FA G  G    A       LSVFHLASVMSGQGE DF +AL VN++G R +L
Sbjct:    2 QKFVLSGGLGLLGQRILQHIVSSGHG-----CVRVMIVDTAPLQAAKSGGPPTAAPGITGDPAVGNGAKCEVLGSSTARGAAAPIADDSSTGAVSVVRGDLSSSDVAAAIKSFAVGDDGGGDHAETTSSSTLSVFHLASVMSGQGEEDFGEALRVNIDGTRSLL 160          
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: A0A7Y9I646_9ACTN (Nucleoside-diphosphate-sugar epimerase n=2 Tax=Microlunatus parietis TaxID=682979 RepID=A0A7Y9I646_9ACTN)

HSP 1 Score: 62.4 bits (150), Expect = 7.450e-9
Identity = 46/129 (35.66%), Postives = 64/129 (49.61%), Query Frame = 1
Query:    1 MGRRVVITGGLGLLGRRILRDIFSTRHGRGHEAAARVLVVDHEDDLGGDLSSDLERDGMADAVSFVGGNFATAEVASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVLAA 387
            M R+++ITGG G LGRR+   +   R     EAA  ++  D         + +  R      V  VGG+ A  E  +A+               + +FHLASV+SGQGE DFD AL VN++G R +L A
Sbjct:    1 MPRKIIITGGAGFLGRRLTEQL---RRPDAPEAAGTIVWYDQP------AAIEAARATAPAGVELVGGDIADPEGLAALLDEPE----------IGIFHLASVVSGQGEQDFDLALRVNLDGTRALLEA 110          
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: UPI0013760C76 (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Microlunatus speluncae TaxID=2594267 RepID=UPI0013760C76)

HSP 1 Score: 59.3 bits (142), Expect = 9.210e-8
Identity = 48/128 (37.50%), Postives = 64/128 (50.00%), Query Frame = 1
Query:   10 RVVITGGLGLLGRRILRDIFSTRHGRGHEAAARVLVVDHEDDLGGDLSSDLE--RDGMADAVSFVGGNFATAEVASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVLAA 387
            +++ITGG G LGRR+   +      RG   A+       E  +  D  + +E  R G    V  VGG+   A   SA+   A           + +FHLASV+SGQGE DFD AL VN++G R VL A
Sbjct:    2 KIIITGGAGFLGRRLTEVLLQ----RGTVTASNGERTGIESIVWYDQPAAIEAVRAGAPAGVELVGGDITDAAGFSALLDRAE----------IGIFHLASVVSGQGEQDFDLALRVNLDGTRTVLEA 115          
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: A0A383D5X1_9ZZZZ (3Beta_HSD domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383D5X1_9ZZZZ)

HSP 1 Score: 57.4 bits (137), Expect = 2.470e-7
Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 1
Query:   10 RVVITGGLGLLGRRILRDIFSTRHGRGHEAAARVLVVDHEDDLGGDLSSDLERDGMADAVSFVGGNFATAE-VASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVLAA 387
            +VVITGG G LG ++ R +   R G     + +   +D E  +   + S   RDG+ + V FV G+ A  + + S I +             +SVFHLASV+SG+GE +FD A+ VN++G R V  A
Sbjct:    2 KVVITGGGGFLGNQLARKL--VRRGSLCGISGKAETID-ELVIFDKIMSQQTRDGLGEPVRFVEGDIANRDLIFSLIDRD-----------DISVFHLASVVSGEGEQNFDLAMQVNLKGGRNVFEA 114          
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: A0A7S1SAU3_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1SAU3_ALECA)

HSP 1 Score: 55.5 bits (132), Expect = 2.040e-6
Identity = 46/130 (35.38%), Postives = 65/130 (50.00%), Query Frame = 1
Query:   10 RVVITGGLGLLGRRILRDIFSTRHGRGHEAAA----RVLVVDHEDDLGGDLSSDLERDGMADAVSFVGGNFATAEVASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVLAA 387
            +VVITGG G LGR++ R I +     G E A      V++ D   ++   L++D      A   + VG     A   S + +            G+ VFHLASVMSGQGE+DFD  + VN+ G + +L A
Sbjct:    2 KVVITGGFGFLGRQLCRRILALGELTGPEDALVKVEEVVLFDKAAEVPAGLTAD------ARVRALVGDIAEAATCRSLVDRD-----------GVLVFHLASVMSGQGEADFDLCMKVNLSGTQNLLEA 114          
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: A0A7C1AK83_9HYPH (NAD-dependent epimerase/dehydratase family protein (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C1AK83_9HYPH)

HSP 1 Score: 52.4 bits (124), Expect = 8.180e-6
Identity = 42/129 (32.56%), Postives = 62/129 (48.06%), Query Frame = 1
Query:   10 RVVITGGLGLLGRRI-----LRDIFSTRHGRGHEAAARVLVVDHEDDLGGDLSSDLERDGMADAVSFVGGNFATAEVASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVL 381
            ++VITGG G LGR++      R   +   GRG E   ++  +D            LE +   + V +V G+   A+V             A G    SVFHLA+V+SGQ E+DFD  + VN++  R +L
Sbjct:    2 KIVITGGAGFLGRKLSEALLARGTLAGLEGRG-EPVTQITCIDQ-----------LEPERPLEGVGYVRGDICDADVLEQ----------AIGDDTASVFHLAAVVSGQAEADFDLGMRVNLDATRALL 108          
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: A0A7S3Y5M2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5M2_HETAK)

HSP 1 Score: 53.5 bits (127), Expect = 8.410e-6
Identity = 48/132 (36.36%), Postives = 69/132 (52.27%), Query Frame = 1
Query:   10 RVVITGGLGLLGRRILRDIFSTRHGRGHEAAA----RVLVVDHEDDLGGD-LSSDLERDGMADAVSFVGGNFAT-AEVASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVLAA 387
            +V+ITGG GLLG R+ R+I S R     +       ++++ D   D GG  L S   +DG++  V  V G+  +   V++   +  S          LSVFHLAS+MSG+GE   D+   VNV G R +L A
Sbjct:    3 QVLITGGKGLLGSRLCREIISKRSMLAADGVISPVEKIILWDRAVDAGGGGLGSCRSKDGIS--VQEVHGDICSDVSVSTLFDQSISD------QMPLSVFHLASMMSGEGEEKADECFEVNVNGTRRLLGA 126          
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: UPI0012EB7AC5 (SDR family oxidoreductase n=1 Tax=Casimicrobium huifangae TaxID=2591109 RepID=UPI0012EB7AC5)

HSP 1 Score: 53.5 bits (127), Expect = 9.800e-6
Identity = 47/130 (36.15%), Postives = 67/130 (51.54%), Query Frame = 1
Query:   10 RVVITGGLGLLGRRILRDIFST-----RHGRGHEAAARVLVVDHEDDLGGDLSSDLERDGMADA-VSFVGGNFATAEVASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVL 381
            RVVITGG G LG+ + + I S       HG   E +  VLV         D+++  +   +AD+ VS V G+ A   V +     A+G          S+FHLA+V+SGQ E+DFD  + VNV+  R +L
Sbjct:    2 RVVITGGAGFLGKLLAQKILSRGQLNDAHGVLREVSELVLV---------DMTAAQDEPWLADSRVSQVVGDIADRAVLARALTAATG----------SIFHLAAVVSGQAEADFDIGMRVNVDATRTLL 112          
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: A0A2E1A475_9DELT (NAD-dependent epimerase n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A2E1A475_9DELT)

HSP 1 Score: 53.5 bits (127), Expect = 9.810e-6
Identity = 43/126 (34.13%), Postives = 64/126 (50.79%), Query Frame = 1
Query:   10 RVVITGGLGLLGRRILRDIFSTRHGRGHEAAARVLVVDHEDDLGGDLSSDLERDGMADAVSFVGGNFATAEVASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVLAA 387
            +VVITGG G LG ++ R +       G    A  +    E  L   + +   R G+ ++ SFV G+ A  E+  ++               LS+FHLASV+SG+GE +FD A+ VN++G R V  A
Sbjct:    2 KVVITGGGGFLGNQLARKLVERGSLCGISGQAETI---DELVLFDQMIAPQARKGLEESASFVEGDIADRELIFSLVDRDD----------LSLFHLASVVSGEGEQNFDLAMQVNLKGGRNVFEA 114          
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: A0A1Y5E3T4_9PROT (Epimerase domain-containing protein n=1 Tax=Alphaproteobacteria bacterium 46_93_T64 TaxID=1856292 RepID=A0A1Y5E3T4_9PROT)

HSP 1 Score: 53.5 bits (127), Expect = 9.810e-6
Identity = 44/131 (33.59%), Postives = 65/131 (49.62%), Query Frame = 1
Query:   10 RVVITGGLGLLGRRILRDIFSTRHGRGH----EAAARVLVVDHEDDLGGDLSSDLERDGMADAVSFVGGNFATAE-VASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVLAA 387
            +VVITGG G +G  I R++       G     E  + +++ D            +   G+ + V  + G+ + AE V S I +             +SVFHLASV+SGQGE DFD A+ VN++G R +L A
Sbjct:    2 KVVITGGAGFIGLNIARELVQRNTLTGPSGQVEPISSIVLFDV-------TVPSVRPHGLDERVELIAGDISDAETVRSLIDQD-----------DISVFHLASVVSGQGELDFDLAMSVNLDGARNILEA 114          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7FZ49_ECTSI2.510e-1339.02NAD-dependent epimerase/dehydratase n=1 Tax=Ectoca... [more]
A0A7Y9I646_9ACTN7.450e-935.66Nucleoside-diphosphate-sugar epimerase n=2 Tax=Mic... [more]
UPI0013760C769.210e-837.50NAD-dependent epimerase/dehydratase family protein... [more]
A0A383D5X1_9ZZZZ2.470e-736.223Beta_HSD domain-containing protein (Fragment) n=1... [more]
A0A7S1SAU3_ALECA2.040e-635.38Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7C1AK83_9HYPH8.180e-632.56NAD-dependent epimerase/dehydratase family protein... [more]
A0A7S3Y5M2_HETAK8.410e-636.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI0012EB7AC59.800e-636.15SDR family oxidoreductase n=1 Tax=Casimicrobium hu... [more]
A0A2E1A475_9DELT9.810e-634.13NAD-dependent epimerase n=3 Tax=Proteobacteria Tax... [more]
A0A1Y5E3T4_9PROT9.810e-633.59Epimerase domain-containing protein n=1 Tax=Alphap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8011contigS-dermatodea_contig8011:7150..7536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue2.1e-11
Seed eggNOG ortholog2880.D7FZ49
EggNOG free text desc.L-threonine 3-dehydrogenase activity
EggNOG OGsCOG0451@1,KOG2774@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionNAD-dependent epimerase/dehydratase, N-terminal domain
Ec32 orthologEc-02_006280.1
Exons1
Model size387
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925314.11579-CDS-S-dermatodea_contig8011:7149..75361622925314.11579-CDS-S-dermatodea_contig8011:7149..7536Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8011 7150..7536 -
1694079848.8676355-CDS-S-dermatodea_contig8011:7149..75361694079848.8676355-CDS-S-dermatodea_contig8011:7149..7536Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8011 7150..7536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8011.16198.1prot_S-dermatodea_contig8011.16198.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8011 7150..7536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8011.16198.1

>prot_S-dermatodea_contig8011.16198.1 ID=prot_S-dermatodea_contig8011.16198.1|Name=mRNA_S-dermatodea_contig8011.16198.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=129bp
MGRRVVITGGLGLLGRRILRDIFSTRHGRGHEAAARVLVVDHEDDLGGDL
SSDLERDGMADAVSFVGGNFATAEVASAIKKFASGGAGAAGGAGLSVFHL
ASVMSGQGESDFDQALHVNVEGKRGVLAA
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mRNA from alignment at S-dermatodea_contig8011:7150..7536-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8011.16198.1 ID=mRNA_S-dermatodea_contig8011.16198.1|Name=mRNA_S-dermatodea_contig8011.16198.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at S-dermatodea_contig8011:7150..7536- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCAGAAGGGTGGTGATCACGGGAGGTTTGGGCCTTCTTGGCCGGCG CATCCTCCGAGACATTTTCTCTACGCGTCATGGACGGGGACACGAAGCGG CGGCAAGGGTGCTGGTGGTCGACCACGAAGATGATCTCGGGGGGGACCTA AGTTCGGACCTCGAGCGCGACGGGATGGCGGACGCCGTTTCTTTCGTTGG CGGAAATTTCGCCACCGCAGAGGTTGCCTCGGCTATAAAAAAGTTCGCTT CAGGGGGCGCTGGTGCCGCCGGTGGTGCCGGGCTCTCCGTCTTCCACCTC GCGTCCGTCATGAGCGGGCAGGGAGAGTCGGACTTCGATCAAGCTCTGCA CGTGAACGTGGAAGGTAAGAGAGGCGTGCTCGCTGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig8011:7150..7536-

>mRNA_S-dermatodea_contig8011.16198.1 ID=mRNA_S-dermatodea_contig8011.16198.1|Name=mRNA_S-dermatodea_contig8011.16198.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at S-dermatodea_contig8011:7150..7536- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCAGAAGGGTGGTGATCACGGGAGGTTTGGGCCTTCTTGGCCGGCG
CATCCTCCGAGACATTTTCTCTACGCGTCATGGACGGGGACACGAAGCGG
CGGCAAGGGTGCTGGTGGTCGACCACGAAGATGATCTCGGGGGGGACCTA
AGTTCGGACCTCGAGCGCGACGGGATGGCGGACGCCGTTTCTTTCGTTGG
CGGAAATTTCGCCACCGCAGAGGTTGCCTCGGCTATAAAAAAGTTCGCTT
CAGGGGGCGCTGGTGCCGCCGGTGGTGCCGGGCTCTCCGTCTTCCACCTC
GCGTCCGTCATGAGCGGGCAGGGAGAGTCGGACTTCGATCAAGCTCTGCA
CGTGAACGTGGAAGGTAAGAGAGGCGTGCTCGCTGCCATGGGCAGAAGGG
TGGTGATCACGGGAGGTTTGGGCCTTCTTGGCCGGCGCATCCTCCGAGAC
ATTTTCTCTACGCGTCATGGACGGGGACACGAAGCGGCGGCAAGGGTGCT
GGTGGTCGACCACGAAGATGATCTCGGGGGGGACCTAAGTTCGGACCTCG
AGCGCGACGGGATGGCGGACGCCGTTTCTTTCGTTGGCGGAAATTTCGCC
ACCGCAGAGGTTGCCTCGGCTATAAAAAAGTTCGCTTCAGGGGGCGCTGG
TGCCGCCGGTGGTGCCGGGCTCTCCGTCTTCCACCTCGCGTCCGTCATGA
GCGGGCAGGGAGAGTCGGACTTCGATCAAGCTCTGCACGTGAACGTGGAA
GGTAAGAGAGGCGTGCTCGCTGCC
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