mRNA_S-dermatodea_contig8011.16198.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: D7FZ49_ECTSI (NAD-dependent epimerase/dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ49_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 2.510e-13 Identity = 64/164 (39.02%), Postives = 84/164 (51.22%), Query Frame = 1
Query: 7 RRVVITGGLGLLGRRILRDIFSTRHGRGHEAAARVLVVDHED--------------DLGGD-----------LSSDLER--------DGMADAVSFVGGNFATAEVASAIKKFASGGAGAAGGAG------LSVFHLASVMSGQGESDFDQALHVNVEGKRGVL 381
++ V++GGLGLLG+RIL+ I S+ HG RV++VD + GD L S R D AVS V G+ ++++VA+AIK FA G G A LSVFHLASVMSGQGE DF +AL VN++G R +L
Sbjct: 2 QKFVLSGGLGLLGQRILQHIVSSGHG-----CVRVMIVDTAPLQAAKSGGPPTAAPGITGDPAVGNGAKCEVLGSSTARGAAAPIADDSSTGAVSVVRGDLSSSDVAAAIKSFAVGDDGGGDHAETTSSSTLSVFHLASVMSGQGEEDFGEALRVNIDGTRSLL 160
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: A0A7Y9I646_9ACTN (Nucleoside-diphosphate-sugar epimerase n=2 Tax=Microlunatus parietis TaxID=682979 RepID=A0A7Y9I646_9ACTN) HSP 1 Score: 62.4 bits (150), Expect = 7.450e-9 Identity = 46/129 (35.66%), Postives = 64/129 (49.61%), Query Frame = 1
Query: 1 MGRRVVITGGLGLLGRRILRDIFSTRHGRGHEAAARVLVVDHEDDLGGDLSSDLERDGMADAVSFVGGNFATAEVASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVLAA 387
M R+++ITGG G LGRR+ + R EAA ++ D + + R V VGG+ A E +A+ + +FHLASV+SGQGE DFD AL VN++G R +L A
Sbjct: 1 MPRKIIITGGAGFLGRRLTEQL---RRPDAPEAAGTIVWYDQP------AAIEAARATAPAGVELVGGDIADPEGLAALLDEPE----------IGIFHLASVVSGQGEQDFDLALRVNLDGTRALLEA 110
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: UPI0013760C76 (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Microlunatus speluncae TaxID=2594267 RepID=UPI0013760C76) HSP 1 Score: 59.3 bits (142), Expect = 9.210e-8 Identity = 48/128 (37.50%), Postives = 64/128 (50.00%), Query Frame = 1
Query: 10 RVVITGGLGLLGRRILRDIFSTRHGRGHEAAARVLVVDHEDDLGGDLSSDLE--RDGMADAVSFVGGNFATAEVASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVLAA 387
+++ITGG G LGRR+ + RG A+ E + D + +E R G V VGG+ A SA+ A + +FHLASV+SGQGE DFD AL VN++G R VL A
Sbjct: 2 KIIITGGAGFLGRRLTEVLLQ----RGTVTASNGERTGIESIVWYDQPAAIEAVRAGAPAGVELVGGDITDAAGFSALLDRAE----------IGIFHLASVVSGQGEQDFDLALRVNLDGTRTVLEA 115
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: A0A383D5X1_9ZZZZ (3Beta_HSD domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383D5X1_9ZZZZ) HSP 1 Score: 57.4 bits (137), Expect = 2.470e-7 Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 1
Query: 10 RVVITGGLGLLGRRILRDIFSTRHGRGHEAAARVLVVDHEDDLGGDLSSDLERDGMADAVSFVGGNFATAE-VASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVLAA 387
+VVITGG G LG ++ R + R G + + +D E + + S RDG+ + V FV G+ A + + S I + +SVFHLASV+SG+GE +FD A+ VN++G R V A
Sbjct: 2 KVVITGGGGFLGNQLARKL--VRRGSLCGISGKAETID-ELVIFDKIMSQQTRDGLGEPVRFVEGDIANRDLIFSLIDRD-----------DISVFHLASVVSGEGEQNFDLAMQVNLKGGRNVFEA 114
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: A0A7S1SAU3_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1SAU3_ALECA) HSP 1 Score: 55.5 bits (132), Expect = 2.040e-6 Identity = 46/130 (35.38%), Postives = 65/130 (50.00%), Query Frame = 1
Query: 10 RVVITGGLGLLGRRILRDIFSTRHGRGHEAAA----RVLVVDHEDDLGGDLSSDLERDGMADAVSFVGGNFATAEVASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVLAA 387
+VVITGG G LGR++ R I + G E A V++ D ++ L++D A + VG A S + + G+ VFHLASVMSGQGE+DFD + VN+ G + +L A
Sbjct: 2 KVVITGGFGFLGRQLCRRILALGELTGPEDALVKVEEVVLFDKAAEVPAGLTAD------ARVRALVGDIAEAATCRSLVDRD-----------GVLVFHLASVMSGQGEADFDLCMKVNLSGTQNLLEA 114
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: A0A7C1AK83_9HYPH (NAD-dependent epimerase/dehydratase family protein (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C1AK83_9HYPH) HSP 1 Score: 52.4 bits (124), Expect = 8.180e-6 Identity = 42/129 (32.56%), Postives = 62/129 (48.06%), Query Frame = 1
Query: 10 RVVITGGLGLLGRRI-----LRDIFSTRHGRGHEAAARVLVVDHEDDLGGDLSSDLERDGMADAVSFVGGNFATAEVASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVL 381
++VITGG G LGR++ R + GRG E ++ +D LE + + V +V G+ A+V A G SVFHLA+V+SGQ E+DFD + VN++ R +L
Sbjct: 2 KIVITGGAGFLGRKLSEALLARGTLAGLEGRG-EPVTQITCIDQ-----------LEPERPLEGVGYVRGDICDADVLEQ----------AIGDDTASVFHLAAVVSGQAEADFDLGMRVNLDATRALL 108
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: A0A7S3Y5M2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y5M2_HETAK) HSP 1 Score: 53.5 bits (127), Expect = 8.410e-6 Identity = 48/132 (36.36%), Postives = 69/132 (52.27%), Query Frame = 1
Query: 10 RVVITGGLGLLGRRILRDIFSTRHGRGHEAAA----RVLVVDHEDDLGGD-LSSDLERDGMADAVSFVGGNFAT-AEVASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVLAA 387
+V+ITGG GLLG R+ R+I S R + ++++ D D GG L S +DG++ V V G+ + V++ + S LSVFHLAS+MSG+GE D+ VNV G R +L A
Sbjct: 3 QVLITGGKGLLGSRLCREIISKRSMLAADGVISPVEKIILWDRAVDAGGGGLGSCRSKDGIS--VQEVHGDICSDVSVSTLFDQSISD------QMPLSVFHLASMMSGEGEEKADECFEVNVNGTRRLLGA 126
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: UPI0012EB7AC5 (SDR family oxidoreductase n=1 Tax=Casimicrobium huifangae TaxID=2591109 RepID=UPI0012EB7AC5) HSP 1 Score: 53.5 bits (127), Expect = 9.800e-6 Identity = 47/130 (36.15%), Postives = 67/130 (51.54%), Query Frame = 1
Query: 10 RVVITGGLGLLGRRILRDIFST-----RHGRGHEAAARVLVVDHEDDLGGDLSSDLERDGMADA-VSFVGGNFATAEVASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVL 381
RVVITGG G LG+ + + I S HG E + VLV D+++ + +AD+ VS V G+ A V + A+G S+FHLA+V+SGQ E+DFD + VNV+ R +L
Sbjct: 2 RVVITGGAGFLGKLLAQKILSRGQLNDAHGVLREVSELVLV---------DMTAAQDEPWLADSRVSQVVGDIADRAVLARALTAATG----------SIFHLAAVVSGQAEADFDIGMRVNVDATRTLL 112
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: A0A2E1A475_9DELT (NAD-dependent epimerase n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A2E1A475_9DELT) HSP 1 Score: 53.5 bits (127), Expect = 9.810e-6 Identity = 43/126 (34.13%), Postives = 64/126 (50.79%), Query Frame = 1
Query: 10 RVVITGGLGLLGRRILRDIFSTRHGRGHEAAARVLVVDHEDDLGGDLSSDLERDGMADAVSFVGGNFATAEVASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVLAA 387
+VVITGG G LG ++ R + G A + E L + + R G+ ++ SFV G+ A E+ ++ LS+FHLASV+SG+GE +FD A+ VN++G R V A
Sbjct: 2 KVVITGGGGFLGNQLARKLVERGSLCGISGQAETI---DELVLFDQMIAPQARKGLEESASFVEGDIADRELIFSLVDRDD----------LSLFHLASVVSGEGEQNFDLAMQVNLKGGRNVFEA 114
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Match: A0A1Y5E3T4_9PROT (Epimerase domain-containing protein n=1 Tax=Alphaproteobacteria bacterium 46_93_T64 TaxID=1856292 RepID=A0A1Y5E3T4_9PROT) HSP 1 Score: 53.5 bits (127), Expect = 9.810e-6 Identity = 44/131 (33.59%), Postives = 65/131 (49.62%), Query Frame = 1
Query: 10 RVVITGGLGLLGRRILRDIFSTRHGRGH----EAAARVLVVDHEDDLGGDLSSDLERDGMADAVSFVGGNFATAE-VASAIKKFASGGAGAAGGAGLSVFHLASVMSGQGESDFDQALHVNVEGKRGVLAA 387
+VVITGG G +G I R++ G E + +++ D + G+ + V + G+ + AE V S I + +SVFHLASV+SGQGE DFD A+ VN++G R +L A
Sbjct: 2 KVVITGGAGFIGLNIARELVQRNTLTGPSGQVEPISSIVLFDV-------TVPSVRPHGLDERVELIAGDISDAETVRSLIDQD-----------DISVFHLASVVSGQGELDFDLAMSVNLDGARNILEA 114 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8011.16198.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8011.16198.1 >prot_S-dermatodea_contig8011.16198.1 ID=prot_S-dermatodea_contig8011.16198.1|Name=mRNA_S-dermatodea_contig8011.16198.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=129bp MGRRVVITGGLGLLGRRILRDIFSTRHGRGHEAAARVLVVDHEDDLGGDLback to top mRNA from alignment at S-dermatodea_contig8011:7150..7536- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8011.16198.1 ID=mRNA_S-dermatodea_contig8011.16198.1|Name=mRNA_S-dermatodea_contig8011.16198.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at S-dermatodea_contig8011:7150..7536- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8011:7150..7536- >mRNA_S-dermatodea_contig8011.16198.1 ID=mRNA_S-dermatodea_contig8011.16198.1|Name=mRNA_S-dermatodea_contig8011.16198.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at S-dermatodea_contig8011:7150..7536- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |