mRNA_S-dermatodea_contig8005.16193.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8005.16193.1
Unique NamemRNA_S-dermatodea_contig8005.16193.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8005.16193.1 vs. uniprot
Match: D8LD92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD92_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 4.260e-14
Identity = 124/384 (32.29%), Postives = 165/384 (42.97%), Query Frame = 1 
Query:   37 VRFSQQISVVLVASRVELSSVKADVWWGEKDYCGFRREYVNAARKQNATKRETERQRKRVAENSTAR----------AAAAPTGTDSDTIGTARNGRL------------DPAPPGTEGWTVGAPPPMHGG-DVTSLAESPLSPPAQRPXXXXXXXTPEHVRARRSSDLSPEEGLAAGGEIVAMLHLDVLQAEPGAAAATVEGSVGSSPPI----AAGVEPPVEAGAADAAAGPPQTDRDHGSMAA--NGSAAAAPQ--CREVPPGEERLLPRAVAAV----DIAAVARGFPWRAERTSSMEAAAARSPGSSVTATARAAARAA-AVIADAKRDGSVGSRGDSVWRVQKGEGPATH-KTGKTTCNGRAPLAFLGDAPIRRVTSF 1077
            VRFS QI V+LVASR+ELSSVK D+WWGE+DYC FRR Y  AAR++    RE   Q  R  + +  R           A +PT   S    ++RNG               P+    +G    +     GG    S A  P  PP           +PEH      ++L  + G+  G + ++ L  D   A  G      +G  G +PP      AGV   + + A +       T   H  +A       AA+P+   R VP     +    +  V    DI +VARGFPWR      +  AA RSPGSS    ARA A A     A+ +R+     R   +  ++ G  P    +TG      R  L FLG A IRRV SF
Sbjct:    5 VRFSNQIRVILVASRLELSSVKTDIWWGERDYCDFRRAYFKAAREEKENDREVTSQ-SRAGQGTPGRDEFDRPGSSPVATSPTTATSAGHPSSRNGSAAAAHDVDDDLPSKPSCGSRDGGGYDSDYDDRGGCSRASQAVLPRPPPP----------SPEHQTREPHAELD-DAGVRVGVKRLSGLLDDQRVAAAGEWEREKDGG-GMTPPHDVGEQAGVSAAITSSAVETVVVAESTAIVHADVAVPQQRKQAASPERRARPVPAKAAEVTAEGIGRVGTSPDITSVARGFPWRG--AGPLGDAAMRSPGSSAVGPARAKALACPCAAAEMRREMR---RETQMPILETGRDPRIDPQTG-----ARVSLPFLGSARIRRVASF 365
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BLAST of mRNA_S-dermatodea_contig8005.16193.1 vs. uniprot
Match: A0A6H5L2K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2K1_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 7.440e-13
Identity = 121/380 (31.84%), Postives = 165/380 (43.42%), Query Frame = 1 
Query:   37 VRFSQQISVVLVASRVELSSVKADVWWGEKDYCGFRREYVNAARKQNATKRETERQRKRVAENSTAR----------AAAAPTGTDSDTIGTARNGR-----------LDPAPPGTEGWTVGAPPPMHGGDVTSLAESP-LSPPAQRPXXXXXXXTPEHVRARRSSDLSPEEGLAAGGEIVAMLHLDVLQAEPGAAAATVEGSVGSSPPIA----AGVEPPVEAGAADAAAGPPQTDRDHGSM--AANGSAAAAPQCREVPPGEERLLPRAVAAVDIAAVARGFPWRAERTSSMEAAAARSPGSSVTATARA----AARAAAVIADAKRDGSVGSRGDSVWRVQKGEGPATH-KTGKTTCNGRAPLAFLGDAPIRRVTSF 1077
            VRFS QI VVLVASR+ELSS+K D+WWGE+DYC FRR Y  AAR++  +  E      R  + +  +           A +PT   S  + ++R+G            L     G+ G          GG  +   +S   S  +Q         +PEH       +L  + G+  G + ++ L  D   A  G      +G  G +PP A    AG    + + A + A     T   H  +        AA+P+ RE P   +  +     A ++A+VARGFPWR     S   AA RSPGS     ARA      RAAA +    R      R   +  ++ G  P    +TG      R PL FLG APIRRV SF
Sbjct:  257 VRFSNQIRVVLVASRLELSSMKTDIWWGERDYCDFRRAYFKAAREEKESDGEVTPP-SRAGQGTPGQDEFDRPGSSPVATSPTTATSAGLSSSRSGSAVAXXXXXXDLLSKPSCGSRG---------DGGYDSDCDDSGGCSRASQAVLPRPPPPSPEHQTHEPHVELD-DAGVLVGVKRLSGLLDDQRVAVAGEWERENDGG-GMTPPHAVNEQAGSSAAITSNAVETAVVAESTATVHADVFIPQQPKQAASPERREWPVLAKAAVVTPGTAPNVASVARGFPWR--EAGSRGDAAMRSPGSVAVGPARAEELACPRAAAEVRREIR------RETQLPILETGRDPRIDPRTG-----ARVPLPFLGSAPIRRVASF 611
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8005.16193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD92_ECTSI4.260e-1432.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2K1_9PHAE7.440e-1331.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8005contigS-dermatodea_contig8005:6910..9199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_002070.1
Exons3
Model size1081
Cds size1080
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8005.16193.1prot_S-dermatodea_contig8005.16193.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8005 6910..9199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925313.7948883-CDS-S-dermatodea_contig8005:6909..70521622925313.7948883-CDS-S-dermatodea_contig8005:6909..7052Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8005 6910..7052 +
1694079848.6579356-CDS-S-dermatodea_contig8005:6909..70521694079848.6579356-CDS-S-dermatodea_contig8005:6909..7052Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8005 6910..7052 +
1622925313.8128607-CDS-S-dermatodea_contig8005:8148..86771622925313.8128607-CDS-S-dermatodea_contig8005:8148..8677Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8005 8149..8677 +
1694079848.667458-CDS-S-dermatodea_contig8005:8148..86771694079848.667458-CDS-S-dermatodea_contig8005:8148..8677Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8005 8149..8677 +
1622925313.8218322-CDS-S-dermatodea_contig8005:8791..91991622925313.8218322-CDS-S-dermatodea_contig8005:8791..9199Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8005 8792..9199 +
1694079848.6772876-CDS-S-dermatodea_contig8005:8791..91991694079848.6772876-CDS-S-dermatodea_contig8005:8791..9199Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8005 8792..9199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8005.16193.1

>prot_S-dermatodea_contig8005.16193.1 ID=prot_S-dermatodea_contig8005.16193.1|Name=mRNA_S-dermatodea_contig8005.16193.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=360bp
SGVSARRRAGARVRFSQQISVVLVASRVELSSVKADVWWGEKDYCGFRRE
YVNAARKQNATKRETERQRKRVAENSTARAAAAPTGTDSDTIGTARNGRL
DPAPPGTEGWTVGAPPPMHGGDVTSLAESPLSPPAQRPPPPPPPPTPEHV
RARRSSDLSPEEGLAAGGEIVAMLHLDVLQAEPGAAAATVEGSVGSSPPI
AAGVEPPVEAGAADAAAGPPQTDRDHGSMAANGSAAAAPQCREVPPGEER
LLPRAVAAVDIAAVARGFPWRAERTSSMEAAAARSPGSSVTATARAAARA
AAVIADAKRDGSVGSRGDSVWRVQKGEGPATHKTGKTTCNGRAPLAFLGD
APIRRVTSF*
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mRNA from alignment at S-dermatodea_contig8005:6910..9199+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8005.16193.1 ID=mRNA_S-dermatodea_contig8005.16193.1|Name=mRNA_S-dermatodea_contig8005.16193.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2290bp|location=Sequence derived from alignment at S-dermatodea_contig8005:6910..9199+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCGGAGTGAGCGCCCGGCGGCGGGCCGGGGCGAGGGTGAGGTTTAGCCA
GCAGATCAGTGTGGTCCTGGTGGCTTCGCGTGTGGAGCTGTCTTCGGTCA
AGGCCGACGTCTGGTGGGGGGAGAAGGATTACTGCGGCTTCAGGTGCGCT
GGGTGCTGCGTCGCGCTTCGTGTCGATTGTTTTTTTTATTGTGTGTTTCT
TTGTGCTGCTGTAGCACTGCCAGTATGCTAGTAGATCCTACTACTGCTGT
GCCATCATGCTCGGCATTACAGAGTTGGGTGATACTGCATAGAAAGCTGT
GGTCGCCCCCTTCTTGTGTTGGGACGCGATGTACTCACCACTCACTGTGT
GATTAAATATCCAGGTGAAACCGCCACTAGCCCGAGCTGTGCAGCCGCGT
CCGCGTTAGTTGAGAACGTCGCCCTGGGCATTGCCAGCACAGGGAAGTGT
CCGTGTCCTGGTTGTCCCGAGTTATCGATCCCTCTGTACAATAGCTTCGT
CGAATCGAGACTGTCGATTTCCTTGTCACGAACTGAACAAAAATTGTCAA
TGTTCACGGCGCAGAACATCTTTCTGACGGTCTCAGACTCGGGCCCTACC
GGCTAAATGTAGCGCGGCCGCTCTTCACGGTTACCGGCGTTACGGCCTCC
GAAATCTCGGCCGCGGTGGTGTTCCCACCACGGTTCTGTCCGCGGTGGCT
TGTGTCCACCAAAGGCCGATGCAAAAAATCGTGGGCCTGGGGGTGCGGTC
CGGTTAGTACCTGCGGACAATACAAGGCGGTTAGCACGCACCGAGGTGTC
GCGCTTAGCACGGGACCACCAAGGCCGCACGGTGCTTTCGTGATCCTAGG
AGAGAGAGCGGTGATTCGTCGAAAGCGGACTGTGTTTTGTGCATTCCGCT
GTTTTTGGAAGGGGGTTGATTCTGCTCCTGGAAGGGGCTAAAACCCCCGC
TGCCCCTGTCGGGATGCCGCCCCCTTTCCAATGTCTGCCGCTGGCCTTGC
TCGTGGCTTGACAGAGCGGCGGCGTTACTCTGCCTTGTAACAGTGTGTAG
TACTCTGCCTTGTAACAGTGTGTAGTATTTATGCGCTTCTATTAGTAGCA
CAGTATTAGTAACGTATGTGTACAGTTACGAACAGGTCGTTCTACAACAC
GCCCTGAGCTGCACTCGCTCTGGTCGCCTCGTTCCACCCCTCTCGTCCGA
ACCAAAACAACACCCGGTTTTTCCTCCGCTGGTCGGCAGGCGCGAATATG
TGAACGCGGCCCGGAAGCAAAACGCCACCAAGAGGGAAACCGAGCGGCAG
AGGAAGAGAGTGGCGGAAAACTCCACCGCTAGGGCCGCGGCCGCGCCGAC
TGGAACCGACTCCGACACGATCGGCACAGCGCGGAATGGGCGGCTAGACC
CGGCACCCCCAGGAACAGAAGGGTGGACCGTCGGCGCGCCCCCTCCGATG
CACGGGGGCGATGTCACGTCGTTGGCGGAGTCGCCGCTTTCGCCTCCGGC
TCAGAGGCCACCGCCGCCCCCGCCGCCGCCGACCCCGGAACACGTGAGAG
CTCGCCGCTCGTCTGACCTGTCGCCGGAGGAAGGTTTAGCGGCAGGCGGT
GAGATTGTCGCAATGCTTCACCTCGACGTGCTCCAAGCAGAGCCAGGAGC
GGCGGCGGCGACGGTGGAGGGGTCGGTGGGGTCAAGTCCGCCTATAGCCG
CTGGCGTGGAACCGCCGGTCGAGGCTGGCGCTGCCGACGCTGCCGCAGGT
CCGCCGCAAACCGATCGGGTTTCACCTGCGAGGTTTGCACTCTCCAGTGG
CGGTGGTGCCGGTGGCAGTGGGAGTGGCGGCTTACCGAACGGGAGCAACG
ATACGCGTGACCTCAAGACGATTCGCGTTGAGGATCACGGAAGCATGGCG
GCGAACGGGAGTGCGGCAGCGGCGCCGCAGTGCCGCGAGGTTCCCCCCGG
TGAGGAGAGGTTACTGCCACGCGCAGTGGCTGCGGTCGACATCGCGGCTG
TGGCCCGGGGGTTCCCCTGGCGTGCAGAGAGGACGTCGTCGATGGAGGCA
GCGGCGGCAAGGTCGCCGGGAAGCTCGGTGACAGCGACGGCGAGGGCGGC
GGCGAGAGCGGCTGCGGTAATTGCAGACGCCAAACGCGACGGCAGCGTCG
GCAGCCGTGGCGACAGCGTTTGGCGGGTGCAAAAGGGGGAAGGGCCGGCG
ACGCACAAGACCGGGAAGACAACGTGCAACGGCCGGGCCCCGCTAGCGTT
CCTTGGAGACGCGCCCATCCGAAGAGTCACATCATTCTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8005:6910..9199+

>mRNA_S-dermatodea_contig8005.16193.1 ID=mRNA_S-dermatodea_contig8005.16193.1|Name=mRNA_S-dermatodea_contig8005.16193.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2160bp|location=Sequence derived from alignment at S-dermatodea_contig8005:6910..9199+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCCGGAGTGAGCGCCCGGCGGCGGGCCGGGGCGAGGGTGAGGTTTAGCCA
GCAGATCAGTGTGGTCCTGGTGGCTTCGCGTGTGGAGCTGTCTTCGGTCA
AGGCCGACGTCTGGTGGGGGGAGAAGGATTACTGCGGCTTCAGTCCGGAG
TGAGCGCCCGGCGGCGGGCCGGGGCGAGGGTGAGGTTTAGCCAGCAGATC
AGTGTGGTCCTGGTGGCTTCGCGTGTGGAGCTGTCTTCGGTCAAGGCCGA
CGTCTGGTGGGGGGAGAAGGATTACTGCGGCTTCAGGCGCGAATATGTGA
ACGCGGCCCGGAAGCAAAACGCCACCAAGAGGGAAACCGAGCGGCAGAGG
AAGAGAGTGGCGGAAAACTCCACCGCTAGGGCCGCGGCCGCGCCGACTGG
AACCGACTCCGACACGATCGGCACAGCGCGGAATGGGCGGCTAGACCCGG
CACCCCCAGGAACAGAAGGGTGGACCGTCGGCGCGCCCCCTCCGATGCAC
GGGGGCGATGTCACGTCGTTGGCGGAGTCGCCGCTTTCGCCTCCGGCTCA
GAGGCCACCGCCGCCCCCGCCGCCGCCGACCCCGGAACACGTGAGAGCTC
GCCGCTCGTCTGACCTGTCGCCGGAGGAAGGTTTAGCGGCAGGCGGTGAG
ATTGTCGCAATGCTTCACCTCGACGTGCTCCAAGCAGAGCCAGGAGCGGC
GGCGGCGACGGTGGAGGGGTCGGTGGGGTCAAGTCCGCCTATAGCCGCTG
GCGTGGAACCGCCGGTCGAGGCTGGCGCTGCCGACGCTGCCGCAGGTCCG
CCGCAAACCGATCGGGCGCGAATATGTGAACGCGGCCCGGAAGCAAAACG
CCACCAAGAGGGAAACCGAGCGGCAGAGGAAGAGAGTGGCGGAAAACTCC
ACCGCTAGGGCCGCGGCCGCGCCGACTGGAACCGACTCCGACACGATCGG
CACAGCGCGGAATGGGCGGCTAGACCCGGCACCCCCAGGAACAGAAGGGT
GGACCGTCGGCGCGCCCCCTCCGATGCACGGGGGCGATGTCACGTCGTTG
GCGGAGTCGCCGCTTTCGCCTCCGGCTCAGAGGCCACCGCCGCCCCCGCC
GCCGCCGACCCCGGAACACGTGAGAGCTCGCCGCTCGTCTGACCTGTCGC
CGGAGGAAGGTTTAGCGGCAGGCGGTGAGATTGTCGCAATGCTTCACCTC
GACGTGCTCCAAGCAGAGCCAGGAGCGGCGGCGGCGACGGTGGAGGGGTC
GGTGGGGTCAAGTCCGCCTATAGCCGCTGGCGTGGAACCGCCGGTCGAGG
CTGGCGCTGCCGACGCTGCCGCAGGTCCGCCGCAAACCGATCGGGATCAC
GGAAGCATGGCGGCGAACGGGAGTGCGGCAGCGGCGCCGCAGTGCCGCGA
GGTTCCCCCCGGTGAGGAGAGGTTACTGCCACGCGCAGTGGCTGCGGTCG
ACATCGCGGCTGTGGCCCGGGGGTTCCCCTGGCGTGCAGAGAGGACGTCG
TCGATGGAGGCAGCGGCGGCAAGGTCGCCGGGAAGCTCGGTGACAGCGAC
GGCGAGGGCGGCGGCGAGAGCGGCTGCGGTAATTGCAGACGCCAAACGCG
ACGGCAGCGTCGGCAGCCGTGGCGACAGCGTTTGGCGGGTGCAAAAGGGG
GAAGGGCCGGCGACGCACAAGACCGGGAAGACAACGTGCAACGGCCGGGC
CCCGCTAGCGTTCCTTGGAGACGCGCCCATCCGAAGAGTCACATCATTCT
AAGATCACGGAAGCATGGCGGCGAACGGGAGTGCGGCAGCGGCGCCGCAG
TGCCGCGAGGTTCCCCCCGGTGAGGAGAGGTTACTGCCACGCGCAGTGGC
TGCGGTCGACATCGCGGCTGTGGCCCGGGGGTTCCCCTGGCGTGCAGAGA
GGACGTCGTCGATGGAGGCAGCGGCGGCAAGGTCGCCGGGAAGCTCGGTG
ACAGCGACGGCGAGGGCGGCGGCGAGAGCGGCTGCGGTAATTGCAGACGC
CAAACGCGACGGCAGCGTCGGCAGCCGTGGCGACAGCGTTTGGCGGGTGC
AAAAGGGGGAAGGGCCGGCGACGCACAAGACCGGGAAGACAACGTGCAAC
GGCCGGGCCCCGCTAGCGTTCCTTGGAGACGCGCCCATCCGAAGAGTCAC
ATCATTCTAA
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