mRNA_S-dermatodea_contig80046.16192.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80046.16192.1
Unique NamemRNA_S-dermatodea_contig80046.16192.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig80046.16192.1 vs. uniprot
Match: D8LCW1_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW1_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 5.210e-21
Identity = 44/65 (67.69%), Postives = 50/65 (76.92%), Query Frame = 1
Query:   13 SPQVIITDADCAMTRAVADFLPRTKHLHCLWHIMKNVRKNCQGALKDKAKPFSSLLNAAAFAVSE 207
            S +V+ITDAD AMT A    LPRT HLHCLWH+MKNVRK+ +GALKDKA  F  L+ AAAFA SE
Sbjct:   16 SLKVLITDADAAMTNAARTLLPRTVHLHCLWHVMKNVRKHYKGALKDKATRFFRLIYAAAFAPSE 80          
BLAST of mRNA_S-dermatodea_contig80046.16192.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 4.930e-17
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   16 PQVIITDADCAMTRAVADFLPRTK-HLHCLWHIMKNVRKNCQGALKDKAKPFSSLLNAAAFAVSE 207
            P+VIITDAD  MT AV  FLP T  HL+CLWH+MKNVRKNC  AL  KA  F  LL+AAAFA +E
Sbjct:  200 PEVIITDADAGMTHAVETFLPSTTVHLYCLWHVMKNVRKNCARALGKKASRFYRLLHAAAFAATE 264          
BLAST of mRNA_S-dermatodea_contig80046.16192.1 vs. uniprot
Match: A0A6H5K5X5_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X5_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.750e-12
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 1
Query:   16 PQVIITDADCAMTRAVADFLPRTKHLHCLWHIMKNVRKNCQGALKD 153
            P+VI+TDAD AMT A+A   P T HLHCLWHI KNV KNC  +  D
Sbjct:   14 PKVILTDADLAMTAAIASCWPDTLHLHCLWHIFKNVLKNCSSSFPD 59          
BLAST of mRNA_S-dermatodea_contig80046.16192.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.710e-12
Identity = 30/46 (65.22%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   16 PQVIITDADCAMTRAVADFLPRTKHLHCLWHIMKNVRKNCQGALKD 153
            P+VI+TDAD AMT A+A   P T HLHCLWHI KNVRKNC  +  D
Sbjct:  277 PKVILTDADLAMTAAIASCWPDTLHLHCLWHIFKNVRKNCSSSFPD 322          
BLAST of mRNA_S-dermatodea_contig80046.16192.1 vs. uniprot
Match: A0A6H5L372_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L372_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 7.420e-10
Identity = 27/42 (64.29%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   19 QVIITDADCAMTRAVADFLPRTKHLHCLWHIMKNVRKNCQGA 144
            QVI+TDAD AMT A+A   P T HLHCLWH+ KNV KNC  +
Sbjct:   51 QVILTDADLAMTAAIASCWPGTLHLHCLWHVFKNVFKNCSSS 92          
BLAST of mRNA_S-dermatodea_contig80046.16192.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.040e-9
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1
Query:   16 PQVIITDADCAMTRAVADFLPRTKHLHCLWHIMKNVRKNCQG 141
            PQVIITDAD AMT +VA+ +P TKHL+  WHI KN+++ C G
Sbjct:  930 PQVIITDADAAMTSSVAELMPHTKHLYSSWHISKNLKRKCGG 971          
BLAST of mRNA_S-dermatodea_contig80046.16192.1 vs. uniprot
Match: A0A6H5KB76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB76_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.420e-9
Identity = 33/65 (50.77%), Postives = 37/65 (56.92%), Query Frame = 1
Query:   22 VIITDADCAMTRAVADFLPRTKHLHCLWHIMKNVRKNCQGALK---DKAKPFSSLLNAAAFAVSE 207
            VI+TDAD AMT A+A   P T HLHCLWH+ KNV KNC  +     DK        NAA  A  E
Sbjct:  328 VILTDADLAMTAAIASCWPGTLHLHCLWHVFKNVLKNCSSSFANNDDKTDMMRCFRNAAYAATPE 392          
BLAST of mRNA_S-dermatodea_contig80046.16192.1 vs. uniprot
Match: D7G4F0_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F0_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 4.780e-9
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1
Query:   16 PQVIITDADCAMTRAVADFLPRTKHLHCLWHIMKNVRKN 132
            P+VI+TDAD AMT A+A   P T HLHCLWH+ KNV KN
Sbjct:  264 PKVILTDADLAMTAAIASCWPGTLHLHCLWHVFKNVLKN 302          
BLAST of mRNA_S-dermatodea_contig80046.16192.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 4.970e-9
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 1
Query:   22 VIITDADCAMTRAVADFLPRTKHLHCLWHIMKNVRKNCQGA 144
            VI+TDAD AMT A+A   P T HLHCLWH+ KNV KNC  +
Sbjct:  569 VILTDADLAMTAAIAFCWPGTMHLHCLWHVFKNVLKNCSSS 609          
BLAST of mRNA_S-dermatodea_contig80046.16192.1 vs. uniprot
Match: A0A6H5KXU9_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU9_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.770e-9
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 1
Query:   19 QVIITDADCAMTRAVADFLPRTKHLHCLWHIMKNVRKNCQGALKD 153
            +VI+TDAD AMT AVA     T+HL CLWH+ KN+ K C GAL D
Sbjct:   10 KVILTDADVAMTSAVASVWKGTQHLFCLWHVNKNLVKKCAGALSD 54          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80046.16192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCW1_ECTSI5.210e-2167.69MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JEJ0_9PHAE4.930e-1766.15SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K5X5_9PHAE1.750e-1263.04MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KWM8_9PHAE3.710e-1265.22MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L372_9PHAE7.420e-1064.29SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE1.040e-961.90SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KB76_9PHAE1.420e-950.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G4F0_ECTSI4.780e-966.67MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KBY4_9PHAE4.970e-963.41SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KXU9_9PHAE5.770e-960.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80046contigS-dermatodea_contig80046:370..576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925313.7626617-CDS-S-dermatodea_contig80046:369..5761622925313.7626617-CDS-S-dermatodea_contig80046:369..576Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80046 370..576 -
1694079848.6479383-CDS-S-dermatodea_contig80046:369..5761694079848.6479383-CDS-S-dermatodea_contig80046:369..576Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80046 370..576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80046.16192.1prot_S-dermatodea_contig80046.16192.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80046 370..576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80046.16192.1

>prot_S-dermatodea_contig80046.16192.1 ID=prot_S-dermatodea_contig80046.16192.1|Name=mRNA_S-dermatodea_contig80046.16192.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=69bp
LPLISPQVIITDADCAMTRAVADFLPRTKHLHCLWHIMKNVRKNCQGALK
DKAKPFSSLLNAAAFAVSE
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mRNA from alignment at S-dermatodea_contig80046:370..576-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80046.16192.1 ID=mRNA_S-dermatodea_contig80046.16192.1|Name=mRNA_S-dermatodea_contig80046.16192.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=207bp|location=Sequence derived from alignment at S-dermatodea_contig80046:370..576- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCCCCCTGATATCTCCGCAGGTCATCATCACGGACGCGGATTGCGCCAT GACAAGGGCCGTGGCAGATTTTTTGCCCCGGACGAAGCACTTGCATTGTT TATGGCACATAATGAAGAACGTGAGGAAAAACTGCCAAGGCGCACTCAAG GACAAGGCCAAACCTTTTTCTAGTCTCCTAAACGCTGCTGCCTTCGCTGT GTCCGAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig80046:370..576-

>mRNA_S-dermatodea_contig80046.16192.1 ID=mRNA_S-dermatodea_contig80046.16192.1|Name=mRNA_S-dermatodea_contig80046.16192.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at S-dermatodea_contig80046:370..576- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCCCCCTGATATCTCCGCAGGTCATCATCACGGACGCGGATTGCGCCAT
GACAAGGGCCGTGGCAGATTTTTTGCCCCGGACGAAGCACTTGCATTGTT
TATGGCACATAATGAAGAACGTGAGGAAAAACTGCCAAGGCGCACTCAAG
GACAAGGCCAAACCTTTTTCTAGTCTCCTAAACGCTGCTGCCTTCGCTGT
GTCCGAACTCCCCCTGATATCTCCGCAGGTCATCATCACGGACGCGGATT
GCGCCATGACAAGGGCCGTGGCAGATTTTTTGCCCCGGACGAAGCACTTG
CATTGTTTATGGCACATAATGAAGAACGTGAGGAAAAACTGCCAAGGCGC
ACTCAAGGACAAGGCCAAACCTTTTTCTAGTCTCCTAAACGCTGCTGCCT
TCGCTGTGTCCGAA
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