mRNA_S-dermatodea_contig8001.16189.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8001.16189.1
Unique NamemRNA_S-dermatodea_contig8001.16189.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8001.16189.1 vs. uniprot
Match: D7G1J7_ECTSI (Ubiquinone Biosynthesis Monooxygenase COQ6 (C-terminal region) Ubiquinone Biosynthesis Monooxygenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1J7_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 1.310e-44
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 1 
Query:    1 IHPMAGQGLNLGIADADALARAVMECRTSGTDIGSKTLLSRYEAERKTEALVMMSALDSLHRLFGADGRAVAAVRSAGMSALNAAVPVKRRLARHAMGG 297
            +HPMAGQGLNLGIADADALARAV+E R SGTD+GSKTLL RYE ERKTEALVMM ALD LHRLFG+D RAVAA RSAG+SALNAA P+KRRLARHAMGG
Sbjct:  475 VHPMAGQGLNLGIADADALARAVLEGRLSGTDVGSKTLLGRYEEERKTEALVMMGALDVLHRLFGSDARAVAAARSAGLSALNAAGPLKRRLARHAMGG 573
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BLAST of mRNA_S-dermatodea_contig8001.16189.1 vs. uniprot
Match: A0A6H5KUH3_9PHAE (FAD_binding_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH3_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 3.430e-43
Identity = 81/99 (81.82%), Postives = 88/99 (88.89%), Query Frame = 1 
Query:    1 IHPMAGQGLNLGIADADALARAVMECRTSGTDIGSKTLLSRYEAERKTEALVMMSALDSLHRLFGADGRAVAAVRSAGMSALNAAVPVKRRLARHAMGG 297
            +HPMAGQGLNLGIADADALARAV+E R SGTD+GS TLL  YE +RKTEALVMM ALD LHRLFG+D RAVAA RSAG+SALNAA P+KRRLARHAMGG
Sbjct:  377 VHPMAGQGLNLGIADADALARAVLEGRLSGTDVGSTTLLGHYEQDRKTEALVMMGALDVLHRLFGSDARAVAAARSAGLSALNAAGPLKRRLARHAMGG 475
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BLAST of mRNA_S-dermatodea_contig8001.16189.1 vs. uniprot
Match: A0A2N5YAS3_9GAMM (FAD-dependent oxidoreductase n=2 Tax=Halioglobus TaxID=1217416 RepID=A0A2N5YAS3_9GAMM)

HSP 1 Score: 100 bits (248), Expect = 8.840e-23
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 1 
Query:    1 IHPMAGQGLNLGIADADALARAVMECRTSGTDIGSKTLLSRYEAERKTEALVMMSALDSLHRLFGADGRAVAAVRSAGMSALNAAVPVKRRLARHAMGGG 300
            IHP+AGQG+NLG+ D +ALA+ ++  R +G   G++ +L+RY+ +RK E L+MMSA+D   RLFG     V  +R+AGM ++ A  P+KRRL RHAMG G
Sbjct:  305 IHPLAGQGINLGLLDVEALAKELLRARAAGLSPGAEVVLARYQRQRKGENLLMMSAMDGFKRLFGERALPVRWLRNAGMRSVGAMAPLKRRLMRHAMGIG 404
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BLAST of mRNA_S-dermatodea_contig8001.16189.1 vs. uniprot
Match: A0A1Y5EM81_9GAMM (2-polyprenyl-6-methoxyphenol hydroxylase n=1 Tax=Cycloclasticus sp. 46_120_T64 TaxID=1856281 RepID=A0A1Y5EM81_9GAMM)

HSP 1 Score: 99.4 bits (246), Expect = 1.520e-22
Identity = 50/98 (51.02%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:    1 IHPMAGQGLNLGIADADALARAVMECRTSGTDIGSKTLLSRYEAERKTEALVMMSALDSLHRLFGADGRAVAAVRSAGMSALNAAVPVKRRLARHAMG 294
            IHP+AGQG NLG+ DA +LA  V++ +  G DI S+ +L RYE +RK + LVMM  +D+L RLF AD  AV  +RS+GMS LN    +K+++ R+AMG
Sbjct:  294 IHPLAGQGANLGLKDAQSLAEVVLQAQQKGRDIASQQVLKRYERQRKADNLVMMGVMDALKRLFTADATAVQLIRSSGMSLLNKLPLLKKQICRYAMG 391
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BLAST of mRNA_S-dermatodea_contig8001.16189.1 vs. uniprot
Match: A0A8H9WGI7_9GAMM (2-polyprenyl-6-methoxyphenol hydroxylase n=1 Tax=Cycloclasticus sp. TaxID=2024830 RepID=A0A8H9WGI7_9GAMM)

HSP 1 Score: 94.0 bits (232), Expect = 2.000e-22
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    1 IHPMAGQGLNLGIADADALARAVMECRTSGTDIGSKTLLSRYEAERKTEALVMMSALDSLHRLFGADGRAVAAVRSAGMSALNAAVPVKRRLARHAMG 294
            IHP+AGQG NLG+ DA  LA  V++    G DI S+ +L RYE +RK + L+MM  +D   RLFGAD   V  VRS+GM A+N++  +K ++ ++AMG
Sbjct:   47 IHPLAGQGANLGLKDATTLASVVLKAHQKGRDIASQQVLRRYERQRKGDNLLMMGIMDGFKRLFGADDMLVQFVRSSGMGAVNSSTLIKNQICKYAMG 144
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BLAST of mRNA_S-dermatodea_contig8001.16189.1 vs. uniprot
Match: A0A3A4W111_9GAMM (2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3A4W111_9GAMM)

HSP 1 Score: 97.8 bits (242), Expect = 5.810e-22
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    1 IHPMAGQGLNLGIADADALARAVMECRTSGTDIGSKTLLSRYEAERKTEALVMMSALDSLHRLFGADGRAVAAVRSAGMSALNAAVPVKRRLARHAMGGG 300
            +HP+AGQG+NLG+ DA  LA  ++     G DIG++++L RYE  RK E L MM+AL  LHRLFG+   ++   R+ G+   +A  PVK  + RHA+GGG
Sbjct:  292 VHPLAGQGVNLGLGDAAVLAETLLRAHAEGKDIGARSVLRRYERARKGEVLAMMAALQGLHRLFGSQHASLRWARNLGLDMTDALTPVKNLIMRHAVGGG 391
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BLAST of mRNA_S-dermatodea_contig8001.16189.1 vs. uniprot
Match: A0A835Z6E6_9STRA (Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6E6_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.940e-21
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 IHPMAGQGLNLGIADADALARAVMECRTSGTDIGSKTLLSRYEAERKTEALVMMSALDSLHRLFGADGRAVAAVRSAGMSALNAAVPVKRRLARHAMG 294
            +HPMAGQGLNLG++DA+ALA A+ E   SG DIGS   LSRY+++R+     M+  LD+LHR+F      VA  R+AGM+ ++A+  +K  +AR AMG
Sbjct:  410 VHPMAGQGLNLGLSDAEALAAAIREAALSGGDIGSVQALSRYDSDRRMRNAAMLGGLDALHRVFATGAAPVALARNAGMALIDASPQLKAAIARVAMG 507
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BLAST of mRNA_S-dermatodea_contig8001.16189.1 vs. uniprot
Match: A0A7C7ZPZ7_9GAMM (2-polyprenyl-6-methoxyphenol hydroxylase n=2 Tax=Cycloclasticus sp. TaxID=2024830 RepID=A0A7C7ZPZ7_9GAMM)

HSP 1 Score: 94.4 bits (233), Expect = 9.480e-21
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    1 IHPMAGQGLNLGIADADALARAVMECRTSGTDIGSKTLLSRYEAERKTEALVMMSALDSLHRLFGADGRAVAAVRSAGMSALNAAVPVKRRLARHAMG 294
            IHP+AGQG NLG+ DA  LA  V++    G DI S+ +L RYE +RK + L+MM  +D   RLFGAD   V  VRS+GM A+N++  +K ++ ++AMG
Sbjct:  281 IHPLAGQGANLGLKDASTLAAVVLKAHQKGRDIASQQVLRRYERQRKGDNLLMMGIMDGFKRLFGADDMLVQFVRSSGMGAVNSSTLIKNQICKYAMG 378
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BLAST of mRNA_S-dermatodea_contig8001.16189.1 vs. uniprot
Match: UPI00141F5355 (UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI00141F5355)

HSP 1 Score: 93.6 bits (231), Expect = 2.650e-20
Identity = 49/98 (50.00%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:    1 IHPMAGQGLNLGIADADALARAVMECRTSGTDIGSKTLLSRYEAERKTEALVMMSALDSLHRLFGADGRAVAAVRSAGMSALNAAVPVKRRLARHAMG 294
            IHP+AGQGLNLG+ D  ALA AV++ R  G DIGS T+L RY+  R+ + + +++A DSL+RLF  D   V  +R  G++A+N   P+KR   RHAMG
Sbjct:  319 IHPIAGQGLNLGLRDVAALAEAVVDARRLGLDIGSATVLQRYQRWRRFDNMALIAATDSLNRLFSTDLPPVRLLRDLGLAAVNRMPPLKRFFMRHAMG 416
[Close]
BLAST of mRNA_S-dermatodea_contig8001.16189.1 vs. uniprot
Match: A0A8H9WFT7_9GAMM (2-polyprenyl-6-methoxyphenol hydroxylase n=1 Tax=Cycloclasticus sp. TaxID=2024830 RepID=A0A8H9WFT7_9GAMM)

HSP 1 Score: 92.4 bits (228), Expect = 5.460e-20
Identity = 46/98 (46.94%), Postives = 65/98 (66.33%), Query Frame = 1 
Query:    1 IHPMAGQGLNLGIADADALARAVMECRTSGTDIGSKTLLSRYEAERKTEALVMMSALDSLHRLFGADGRAVAAVRSAGMSALNAAVPVKRRLARHAMG 294
            IHP+AGQG NLG+ DA ALA  V++    G DI S+ +L RYE +RK + L+MM  +D   RLFGAD   V   RS+GM  +N++  +K ++ ++AMG
Sbjct:  295 IHPLAGQGANLGLKDAIALAEVVLQAHEKGRDIASQQVLRRYERQRKGDNLLMMGLMDGFKRLFGADDMLVQFARSSGMGVVNSSTLIKNQICKYAMG 392
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8001.16189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1J7_ECTSI1.310e-4484.85Ubiquinone Biosynthesis Monooxygenase COQ6 (C-term... [more]
A0A6H5KUH3_9PHAE3.430e-4381.82FAD_binding_3 domain-containing protein n=1 Tax=Ec... [more]
A0A2N5YAS3_9GAMM8.840e-2350.00FAD-dependent oxidoreductase n=2 Tax=Halioglobus T... [more]
A0A1Y5EM81_9GAMM1.520e-2251.022-polyprenyl-6-methoxyphenol hydroxylase n=1 Tax=C... [more]
A0A8H9WGI7_9GAMM2.000e-2247.962-polyprenyl-6-methoxyphenol hydroxylase n=1 Tax=C... [more]
A0A3A4W111_9GAMM5.810e-2247.002-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy... [more]
A0A835Z6E6_9STRA3.940e-2150.00Ubiquinone biosynthesis monooxygenase COQ6, mitoch... [more]
A0A7C7ZPZ7_9GAMM9.480e-2147.962-polyprenyl-6-methoxyphenol hydroxylase n=2 Tax=C... [more]
UPI00141F53552.650e-2050.00UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis... [more]
A0A8H9WFT7_9GAMM5.460e-2046.942-polyprenyl-6-methoxyphenol hydroxylase n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8001contigS-dermatodea_contig8001:7205..9132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score153.7
Seed ortholog evalue4.6e-35
Seed eggNOG ortholog2880.D7G1J7
Preferred nameCOQ6
KEGG rclassRC02670
KEGG koko:K06126,ko:K21437
KEGG ReactionR04982,R08773
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00128
EggNOG free text desc.FAD binding
EggNOG OGsCOG0654@1,KOG3855@2759
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquinone Biosynthesis Monooxygenase COQ6 (C-terminal region) Ubiquinone Biosynthesis Monooxygenase
Ec32 orthologEc-07_001290.1
Exons2
Model size306
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8001.16189.1prot_S-dermatodea_contig8001.16189.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8001 7205..9123 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925313.5696447-CDS-S-dermatodea_contig8001:7204..73691622925313.5696447-CDS-S-dermatodea_contig8001:7204..7369Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8001 7205..7369 -
1694079848.5321639-CDS-S-dermatodea_contig8001:7204..73691694079848.5321639-CDS-S-dermatodea_contig8001:7204..7369Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8001 7205..7369 -
1622925313.5800796-CDS-S-dermatodea_contig8001:8991..91231622925313.5800796-CDS-S-dermatodea_contig8001:8991..9123Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8001 8992..9123 -
1694079848.545505-CDS-S-dermatodea_contig8001:8991..91231694079848.545505-CDS-S-dermatodea_contig8001:8991..9123Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8001 8992..9123 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925313.5897808-UTR-S-dermatodea_contig8001:9123..91321622925313.5897808-UTR-S-dermatodea_contig8001:9123..9132Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8001 9124..9132 -
1694079848.5560596-UTR-S-dermatodea_contig8001:9123..91321694079848.5560596-UTR-S-dermatodea_contig8001:9123..9132Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8001 9124..9132 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8001.16189.1

>prot_S-dermatodea_contig8001.16189.1 ID=prot_S-dermatodea_contig8001.16189.1|Name=mRNA_S-dermatodea_contig8001.16189.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=99bp
MAGQGLNLGIADADALARAVMECRTSGTDIGSKTLLSRYEAERKTEALVM
MSALDSLHRLFGADGRAVAAVRSAGMSALNAAVPVKRRLARHAMGGGQ*
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mRNA from alignment at S-dermatodea_contig8001:7205..9132-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8001.16189.1 ID=mRNA_S-dermatodea_contig8001.16189.1|Name=mRNA_S-dermatodea_contig8001.16189.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1928bp|location=Sequence derived from alignment at S-dermatodea_contig8001:7205..9132- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATCCATCCAATGGCGGGGCAGGGGCTTAACCTAGGCATAGCGGACGCGGA
TGCTTTGGCCCGAGCGGTAATGGAATGTCGAACATCGGGGACCGACATAG
GTTCAAAGACCCTACTCTCGCGCTACGAGGCTGAAAGAAAGGTGAAAGGG
ATTTTTATGTATTTATTTTATGTTTATGGTCATGTTATTATTTTATTTTA
TTTTATTTTAGTTGTTATTGTTAACTTTTGTAAAAAATGGACACAACAAA
CAAATGCAAACGAGGCCAAAATATATTTGTGAGAGGGATATATAAATATT
ATATTTTATTTTTTCAATGTTTTTATATTAATGTTTTTTTTCTCGTAGAT
TTTTTTTTATTATTTTTTGTGAAAATGGACAACAAGCTAAATTAAAAACT
AAAACTGGCTTCGCTACGACAGAAAAATAGGTACTTCGAAGTATGATTTT
GGTGTGGACAAAAGAGCTGTTAACAGTATCATATATCATATCGGCTGTTC
TATACATGTACAAGTATTCATGACGCCAAACACACCACACCACACACAAA
CACACCCCTCTGTGGGAGCAATGCTCCGTCCAACGGTCTAACAGCCAAGG
CATGCTAAATATTCACTGTACCCCCACCCCCACGCCCTCCCCACCCAATT
GACCATCGGCAATCGATCCACCGAGAACAATGCTCCGTCCTCCCGAGGGC
ACGCGGTCAATGGCCGAACTGCTAAGACATGCAAAACTCGAGTCCCCCCC
CACCACCCCTCCCCCCCCCGTCGCTTTCGAAGCTTGGGACACCCAGACGA
GGGCGGTAGCTATACGGGGGCGTAAGAAGTGGCCTGAGAAGGCGAGATGT
GATGTAGACAGGATATCAAAGGAAAAAAATTGCGCCACCTTTGGCAGAGT
AGGAAATGAACGATTGATTGGCCATCGGTGACTGATCGATCGGTCCTGTG
GGAACAATGCTCCTTCCCCTTCGAGGACAGACGCGTGGCCAATGGTCTAA
CAGCCAAGGCGTGCAAACCATGAGCACGGCCCTCCTGGCCACCACATACT
ATACGTTTCGAAAACACAAAAGCGGAGCGTTGGGGTCCCATCCCACCTTT
GCAAGAGGGAAGACGGTCCAAGCTATCATACACCTACGCAGCTAACTTGT
CACTACGATGCTATGGTTTTCACGTCATGTATCATGTTATGTGCTTATGA
CACAGGTGTCATTCATTGGTCTGAGCGATACCCCTCCCCCTCCCCTGAAA
AAATACATATTTCAGAAACATAGAGCGAGCGTTGGAGTCCCACCTTTTCA
AGAGGGAAGATGGTCCAGCCAAGCTACACCTATGGAGGCTCACGTGTTCC
ATGTGATGCTATGGTGTCTTACCATGTATGATGCTATATGGTTATGGTAT
CATACAGGACATGAATCTTTGTCCTGAGGTATCTATATCCTGGTGATGTA
CAAGTATCTTTGCCGCGTTTCTATGAGCCAATAATATTTAATGTTCCTTT
CCTACCACACACTTTTAGTGTATATATTCTATCGATCGAGCCTTTCTGGT
CGATTATTTGGCGAGTTTTACATAGTACACCCATAGTACCTTTGTCTGAT
TGTTGTGAGATGACTGCTCAGTACAGCACCCATCTCTCCTTTCACTTGCA
GGATCTTGTGCTATAAGGATACTCCTCGTACTCGCAGCAGTACTAGTCGA
TGTCGCGGTACTTGAATCGAACTCAGCCCCCCCCCCCCCCCCGAACACGC
CTTCTGTGGGCAGACTGAAGCGTTGGTGATGATGAGCGCTCTGGACTCCT
TGCATCGACTCTTCGGCGCTGACGGAAGGGCGGTAGCGGCGGTGCGGAGC
GCGGGGATGAGCGCGCTAAACGCGGCGGTACCTGTAAAGAGGCGTTTGGC
ACGCCATGCCATGGGCGGCGGCCAATAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8001:7205..9132-

>mRNA_S-dermatodea_contig8001.16189.1 ID=mRNA_S-dermatodea_contig8001.16189.1|Name=mRNA_S-dermatodea_contig8001.16189.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at S-dermatodea_contig8001:7205..9132- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGGGGCAGGGGCTTAACCTAGGCATAGCGGACGCGGATGCTTTGGC
CCGAGCGGTAATGGAATGTCGAACATCGGGGACCGACATAGGTTCAAAGA
CCCTACTCTCGCGCTACGAGGCTGAAAGAAAGATGGCGGGGCAGGGGCTT
AACCTAGGCATAGCGGACGCGGATGCTTTGGCCCGAGCGGTAATGGAATG
TCGAACATCGGGGACCGACATAGGTTCAAAGACCCTACTCTCGCGCTACG
AGGCTGAAAGAAAGACTGAAGCGTTGGTGATGATGAGCGCTCTGGACTCC
TTGCATCGACTCTTCGGCGCTGACGGAAGGGCGGTAGCGGCGGTGCGGAG
CGCGGGGATGAGCGCGCTAAACGCGGCGGTACCTGTAAAGAGGCGTTTGG
CACGCCATGCCATGGGCGGCGGCCAATAGACTGAAGCGTTGGTGATGATG
AGCGCTCTGGACTCCTTGCATCGACTCTTCGGCGCTGACGGAAGGGCGGT
AGCGGCGGTGCGGAGCGCGGGGATGAGCGCGCTAAACGCGGCGGTACCTG
TAAAGAGGCGTTTGGCACGCCATGCCATGGGCGGCGGCCAATAG
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