mRNA_S-dermatodea_contig8001.16188.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8001.16188.1
Unique NamemRNA_S-dermatodea_contig8001.16188.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8001.16188.1 vs. uniprot
Match: D7G1K8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1K8_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 4.690e-77
Identity = 169/296 (57.09%), Postives = 196/296 (66.22%), Query Frame = 1 
Query:    1 MRAQMFTIFTLGLAASGVHAAAPTYSCFPIPDEGQTNPLGEGMEDVVEAECCEALIDDSDILAERIVVWDPLNCNHGPGETAITEAPLCRAHDTDGCRFCRESCDDFEGLCILCDDIYATYATTGSPTXXXXXXXXXXXXT----------DAPFGIFPETPAPTVPGPAAAPTTDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT------------------------------EIEVLETRGKTMVCDPTCSDGTDLTWGVLNCNYFALGQDCRTCADTCEE 768
            MR+ + T+   GL +    +AAPTYSCF  PDEGQTNPLGEGMEDVVE+ECCEALID+SD++A+R V+WDP+NCNHGPG+  I EA LCRAHDTDGCRFC +SCD +EGLCI C+++      + SPT            T          +APFGIFP TPAP  P     PT   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                               E+ VL  R K MVCDPTCSD +DL WGV+NCNYFALGQ+CR C+D C++
Sbjct:    1 MRSDIATVIAFGLLSVCPVSAAPTYSCFDPPDEGQTNPLGEGMEDVVESECCEALIDESDMMADREVIWDPVNCNHGPGDEPIAEAYLCRAHDTDGCRFCHDSCDGYEGLCITCEEVLEDLLNSDSPTPSPDFETSEFPATPAPAILTAATEAPFGIFPATPAPVAP--VXXPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAPTAEASDCECVNSLSEEEMAVLTRRSKNMVCDPTCSDQSDLVWGVMNCNYFALGQNCRACSDLCDD 294
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8001.16188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1K8_ECTSI4.690e-7757.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8001contigS-dermatodea_contig8001:12..3867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size768
Cds size768
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8001.16188.1prot_S-dermatodea_contig8001.16188.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8001 12..3867 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925313.503195-CDS-S-dermatodea_contig8001:11..791622925313.503195-CDS-S-dermatodea_contig8001:11..79Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8001 12..79 -
1694079848.475111-CDS-S-dermatodea_contig8001:11..791694079848.475111-CDS-S-dermatodea_contig8001:11..79Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8001 12..79 -
1622925313.513796-CDS-S-dermatodea_contig8001:887..12631622925313.513796-CDS-S-dermatodea_contig8001:887..1263Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8001 888..1263 -
1694079848.4846044-CDS-S-dermatodea_contig8001:887..12631694079848.4846044-CDS-S-dermatodea_contig8001:887..1263Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8001 888..1263 -
1622925313.5268157-CDS-S-dermatodea_contig8001:2109..22571622925313.5268157-CDS-S-dermatodea_contig8001:2109..2257Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8001 2110..2257 -
1694079848.497917-CDS-S-dermatodea_contig8001:2109..22571694079848.497917-CDS-S-dermatodea_contig8001:2109..2257Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8001 2110..2257 -
1622925313.5377066-CDS-S-dermatodea_contig8001:3691..38671622925313.5377066-CDS-S-dermatodea_contig8001:3691..3867Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8001 3692..3867 -
1694079848.519954-CDS-S-dermatodea_contig8001:3691..38671694079848.519954-CDS-S-dermatodea_contig8001:3691..3867Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8001 3692..3867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8001.16188.1

>prot_S-dermatodea_contig8001.16188.1 ID=prot_S-dermatodea_contig8001.16188.1|Name=mRNA_S-dermatodea_contig8001.16188.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=256bp
MRAQMFTIFTLGLAASGVHAAAPTYSCFPIPDEGQTNPLGEGMEDVVEAE
CCEALIDDSDILAERIVVWDPLNCNHGPGETAITEAPLCRAHDTDGCRFC
RESCDDFEGLCILCDDIYATYATTGSPTPSPSEFGGGGGGTDAPFGIFPE
TPAPTVPGPAAAPTTDAGSETPSPAAGAGGDGTGGSDETPAPVTVGDCDC
NENMSQTEIEVLETRGKTMVCDPTCSDGTDLTWGVLNCNYFALGQDCRTC
ADTCEE
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mRNA from alignment at S-dermatodea_contig8001:12..3867-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8001.16188.1 ID=mRNA_S-dermatodea_contig8001.16188.1|Name=mRNA_S-dermatodea_contig8001.16188.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3856bp|location=Sequence derived from alignment at S-dermatodea_contig8001:12..3867- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGTGCCCAGATGTTCACGATCTTCACTCTGGGCCTCGCCGCGAGCGG
CGTCCACGCGGCCGCCCCGACGTACTCCTGCTTCCCGATCCCCGACGAGG
GGCAGACCAACCCGCTCGGGGAAGGGATGGAGGACGTCGTAGAAGCGGAG
TGCTGCGAGGCACTCATCGACGACAGGTGGGTGTGGTGTTATCCGGGCGC
GCGTGTGGGCCGGGTCCGGCCCGCCTGCTGTGCGTATCATGTATATATGT
GCATGCATGCGCATGAATGCGCGAGCAGCTTGTTGTGGTCTTTCCTTCGA
TTCATGATTTCTCATTTCGGCGGGACGAGTGCCGCGCCGGCGCCGCGCGA
GGCACGATCGCCGCTTGCCTGTGGACGTCGTCGGATCACCGCTAGCGATT
GCCACGCGTGTGTATGTACGTAGTAGTCGGCCACGCTGCGAGGCGCAACG
CAGGTACAGATGTTATTGCGGCGCAGTTGCCGGCGTGTTGTCTCGGACAT
GATCTTTTTTGTATGAGCGTCTCCCGGGGACCATTTTCCGCAAGATTTTG
AGTATGTTGTGCATGAGGCATGAGGAGCTCTTAGGCAAATCGAGCGAGCG
AATTGACCAGTGCTCAGCGCGTGTTGTGCTGCGGCCGGGCCAAGCCGGCA
ACGCTGAGCTGCTGTGCGTGTGTGTAAAGCTTCAGACCCCGGCGTTCTTT
TTTGCGATTGCCGGAAGCCGTCGAGGTTATCTTCAGAGAGAGTTGTCGTT
ACACGCTCGGACCGATCAAAACATGTATCATACTGGTAAATGATATGTAC
TTGCAGCAGTATATGTTATAGTAGGGCAGCAGCCTCTCCGATGTCGATCA
CGCCGCGACGCACAGCAGCAGTGGTGTATGCTCAGAAACCGGTGCCCTCG
AAACCCTCGCGGCTGTGCCAGCGCCGGCAGCTTTGTTCTACTGCATAAAT
GGCATGAAAATGTGCCCGAGGTTAAATTTTTTTGCGTCTCGAAAAAAATA
GGCCCGGCTTGTGGAAAACAACAAAACAAAGGCACCAGTAGTCCCGCCGC
GCAGCGTAAAAAACACACCGCATTTTTCCAGAACAAATCGTACATACAGT
AGTACCTACACATCAATACATACATATTATACATGTACATACACTCGTAA
AGAATCGAGCCCCCTTTTACCTGACACCATCATACGTCCAGCCAAGAAAA
ACTCGCGGCTTACTATATAATAGTATAATAGTATAATACAGGATGCACTG
CTCGCTCTACTTCTACTGCTTGCTGTACAATGTATACGAAGTATACTTCG
AAGTATATATATATATGTTGTGTGTGTATGTATCCCTCCGAGATTCGTCT
TGCTTGTATATATAAAAGCATAAAAACAAGCCGCTCGCAATATCATATGA
TAATCCTCACGATCAAATCGCGATCGCCGGCCGGCCCGGCCCGGCCCGGC
CCGGCCGGTTTTTTTCCGGACCAAAAAAATCAGTTACACTCCAAAAGTCG
GGTTAACAGTAAAAGATCCAATATTCCCTCCCACCCGTCGGTCTCGATCC
CCCCTCCCACCCGGCCCCCCCTTCCCCCCCCCCCCCCCCCACCGTGTATG
CATACTGCAGCGACATCCTCGCCGAGCGCATCGTGGTGTGGGACCCGCTC
AACTGCAACCACGGTCCGGGCGAGACGGCCATCACCGAGGCTCCCCTGTG
CCGCGCGCACGACACGGACGGCTGCCGGTTCTGCCGCGAGTCGTGCGACG
ACTTTGAGGTGCGCTTGATTTGGTTTGAATTGCTTTGGTTTGGTTTGCTT
TGGGTTGATTTTGAATTGGATTTGATTTGGATTTGAGTTGGATTTGATTT
GGATTTGATTTGATTTGAGTTGATCTGATTGGTTTCAACCGACAGTGCAG
TATTCCTCGTGGTCGAAAAACAAAATGGTACGGAACTATACAGCAGTACC
TAGAGCTGTATCATAGCATATACAAGTATTAATACTGTTTTACATGTACA
TGCAACCTACAAAGAAGGAGTTGACGTAAGTGGGTATCTATTCTCTTATA
CCCCCCCCCAAGTAGAGCTCCAAAGGAAGTCGGTTTTAGTGGATGTACAT
GGATTACATACTTGTACATACATACTTGTACATGAATTTTGAACAAAAAA
AAGTGTACAAAGTATACAACAAGAATAACTCTATAAAAAACATAATCTAT
TTCTCTTCACCTATAATAATCATGAACTCTCGGCTCGTTTTTACGAGTTT
TCTTCTATTTTGTTTTGTTTTATTCGGCGCTTTTTTTTTTTTTTTTACGG
TGCTTTTTCACGGCCGCCGCAGATCCGCGGGAGTCTTAACCAAATACCAC
CCGAGATATCACCGCCGCTATCATATCGATATGATATCAAACACCGTACT
TTTTATGATATCCCATCACACCACATCCCTTTTCATTTTTGCATCCTCAA
CACTTCCTGAGACCCAAGTTTACCTGTATCAACCTCACCCAATCCCACTC
AACCCCACCCAACCCAACCCAACCCAACCCAACCCAACCCAACCCAACCC
AACCCAACCCAACCCCACCCCACCCCACCCAACCCAACCCCCAAAACAAA
ACAGGGCCTCTGCATCCTCTGCGACGACATATACGCGACCTACGCCACCA
CCGGCAGCCCCACGCCTTCTCCCTCCGAGTTCGGCGGCGGTGGAGGCGGG
ACTGACGCGCCATTCGGCATCTTCCCCGAGACTCCGGCCCCGACCGTCCC
CGGGCCGGCGGCTGCGCCCACGACCGACGCGGGGTCCGAGACTCCTTCGC
CTGCGGCGGGCGCTGGGGGTGATGGGACGGGCGGCTCGGACGAGACGCCC
GCTCCCGTTACCGTGGGCGACTGCGACTGCAACGAGAACATGTCCCAGAC
GGAGATCGAGGTGCTGGAGACGAGGGGGAAGACCATGGTGTGCGACCCGA
CCTGCTCGGACGGAACCGACCTCACGTGGGGTGAGTTTTAGTTATTATAT
GATATTATACAGTATGATATGTGCATGTGTGTGGGTGTATGTATCTGCCG
GTTGTGTGCGATGCATGTTGTAGTTATGGTATTATATGATAGTATGTACA
TGTGTATCTGCCGGTAGTGTGCGCAGCGTTTACAGAGAGAGAAAGAGAAC
ACACAGACGCACAAACGCCTAGGAAATTACCTTTTTATCACTGTAGTATC
ATACTGTGTCGCCGCGATTCCAGAGGTAATCGGCATCGCACTTTGTATGT
TGTATGTGTTGTTTATTGTTATTGTTGTTGTTGAGTTTATTGTTATTGTT
ATTGTTATTGTTAAGTTTATTGTTATTGTTATTGTTATTGTGTGTGTGTT
GTAATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTGCGTGTG
CCTAAATGTATTAGTGTGCTTTGCAAAAAACATTACGTACTTGTAGTAAA
TAAATGCTGATGCAAGGCTGATGGATTGATTGACTTGACGTGTGATTAAT
TGATTGATTGATTGATTGATTGATTGATTGATTAATTCATTGATTGGTCG
ATTGATTGATTGGTACATCGCGTTTCTCGACCGATCGGCCTGGCCTGCGA
ATGGTTTATTTATGCTGCCGTTTGGCAAAAATCGGTCATCATCGTTGTTG
TATCTTTTCTTTTTTTTTCTTCAACTTTTAACCAAGCGAATTTTACTCAC
ATTCGCCAAATAACAACGCTTTCGTATTCGAACAGCACCACATAACCCCC
CCTCCCCCCCTTCCCCCCCTCACCCCCCCCCCTCCCAGGCGTGCTGAACT
GCAACTACTTCGCCCTCGGACAGGACTGCCGCACCTGCGCCGACACATGC
GAGGAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8001:12..3867-

>mRNA_S-dermatodea_contig8001.16188.1 ID=mRNA_S-dermatodea_contig8001.16188.1|Name=mRNA_S-dermatodea_contig8001.16188.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1536bp|location=Sequence derived from alignment at S-dermatodea_contig8001:12..3867- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGTGCCCAGATGTTCACGATCTTCACTCTGGGCCTCGCCGCGAGCGG
CGTCCACGCGGCCGCCCCGACGTACTCCTGCTTCCCGATCCCCGACGAGG
GGCAGACCAACCCGCTCGGGGAAGGGATGGAGGACGTCGTAGAAGCGGAG
TGCTGCGAGGCACTCATCGACGACAGATGCGTGCCCAGATGTTCACGATC
TTCACTCTGGGCCTCGCCGCGAGCGGCGTCCACGCGGCCGCCCCGACGTA
CTCCTGCTTCCCGATCCCCGACGAGGGGCAGACCAACCCGCTCGGGGAAG
GGATGGAGGACGTCGTAGAAGCGGAGTGCTGCGAGGCACTCATCGACGAC
AGCGACATCCTCGCCGAGCGCATCGTGGTGTGGGACCCGCTCAACTGCAA
CCACGGTCCGGGCGAGACGGCCATCACCGAGGCTCCCCTGTGCCGCGCGC
ACGACACGGACGGCTGCCGGTTCTGCCGCGAGTCGTGCGACGACTTTGAG
CGACATCCTCGCCGAGCGCATCGTGGTGTGGGACCCGCTCAACTGCAACC
ACGGTCCGGGCGAGACGGCCATCACCGAGGCTCCCCTGTGCCGCGCGCAC
GACACGGACGGCTGCCGGTTCTGCCGCGAGTCGTGCGACGACTTTGAGGG
CCTCTGCATCCTCTGCGACGACATATACGCGACCTACGCCACCACCGGCA
GCCCCACGCCTTCTCCCTCCGAGTTCGGCGGCGGTGGAGGCGGGACTGAC
GCGCCATTCGGCATCTTCCCCGAGACTCCGGCCCCGACCGTCCCCGGGCC
GGCGGCTGCGCCCACGACCGACGCGGGGTCCGAGACTCCTTCGCCTGCGG
CGGGCGCTGGGGGTGATGGGACGGGCGGCTCGGACGAGACGCCCGCTCCC
GTTACCGTGGGCGACTGCGACTGCAACGAGAACATGTCCCAGACGGAGAT
CGAGGTGCTGGAGACGAGGGGGAAGACCATGGTGTGCGACCCGACCTGCT
CGGACGGAACCGACCTCACGTGGGGGCCTCTGCATCCTCTGCGACGACAT
ATACGCGACCTACGCCACCACCGGCAGCCCCACGCCTTCTCCCTCCGAGT
TCGGCGGCGGTGGAGGCGGGACTGACGCGCCATTCGGCATCTTCCCCGAG
ACTCCGGCCCCGACCGTCCCCGGGCCGGCGGCTGCGCCCACGACCGACGC
GGGGTCCGAGACTCCTTCGCCTGCGGCGGGCGCTGGGGGTGATGGGACGG
GCGGCTCGGACGAGACGCCCGCTCCCGTTACCGTGGGCGACTGCGACTGC
AACGAGAACATGTCCCAGACGGAGATCGAGGTGCTGGAGACGAGGGGGAA
GACCATGGTGTGCGACCCGACCTGCTCGGACGGAACCGACCTCACGTGGG
GCGTGCTGAACTGCAACTACTTCGCCCTCGGACAGGACTGCCGCACCTGC
GCCGACACATGCGAGGAAGCGTGCTGAACTGCAACTACTTCGCCCTCGGA
CAGGACTGCCGCACCTGCGCCGACACATGCGAGGAA
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