mRNA_S-dermatodea_contig79938.16181.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig79938.16181.1
Unique NamemRNA_S-dermatodea_contig79938.16181.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig79938.16181.1 vs. uniprot
Match: A0A6H5JM32_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM32_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 5.780e-29
Identity = 51/59 (86.44%), Postives = 56/59 (94.92%), Query Frame = 1 
Query:   37 RIAFKVVGYGGPTVILVKERGTGAVWGGCADSPWKESNSFYGGEASFLMRLEPDFKIIP 213
            R+AFK+VGYGGPTVIL++ER +GAVWGGCADSPWKESNSFYGGEASFL RL PDFKIIP
Sbjct:  122 RVAFKLVGYGGPTVILIRERESGAVWGGCADSPWKESNSFYGGEASFLFRLAPDFKIIP 180
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BLAST of mRNA_S-dermatodea_contig79938.16181.1 vs. uniprot
Match: A0A7S3YII2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YII2_HETAK)

HSP 1 Score: 68.6 bits (166), Expect = 3.860e-12
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:   37 RIAFKVVGYGGPTVILVKERGTGAVWGGCADSPWKESNSFYGGEAS--------FLMRLEPDFKIIPS 216
            R+  K +GYGGPT++LV++ G GAV+GG A +PW+E N  YGG           FL RLEP+F+I P+
Sbjct:   53 RVCHKALGYGGPTLVLVRDEG-GAVFGGLAPAPWREGNEMYGGXXXXXXXXXXXFLFRLEPEFRIYPA 119
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BLAST of mRNA_S-dermatodea_contig79938.16181.1 vs. uniprot
Match: A0A835YL28_9STRA (TLD-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL28_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.980e-11
Identity = 27/60 (45.00%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:   37 RIAFKVVGYGGPTVILVKERGTGAVWGGCADSPWKESNSFYGGEASFLMRLEPDFKIIPS 216
            R+   ++GYGGP+++++++R +GAV GG A   W+E N+FYGG  SFL +L P F++  S
Sbjct:  296 RLCHSIMGYGGPSLLVLRDRVSGAVLGGVASDTWRELNTFYGGSESFLFQLSPSFRVCQS 355
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BLAST of mRNA_S-dermatodea_contig79938.16181.1 vs. uniprot
Match: A0A4D9CZC0_9STRA (TLDc domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CZC0_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 8.200e-7
Identity = 27/55 (49.09%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:   37 RIAFKVVGYGGPTVILVKERGTGAVWGGCADSPWKESNSFYGGEASFLMRLEPDF 201
            RI   ++GY GPTV+LV++  TGAV+G      W+ESN F+G    FL RL P F
Sbjct:  377 RICHHILGYRGPTVLLVRDT-TGAVFGFFTTEAWRESNGFFGSSDCFLFRLCPSF 430
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BLAST of mRNA_S-dermatodea_contig79938.16181.1 vs. uniprot
Match: A0A7S2RCF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RCF4_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.700e-6
Identity = 22/57 (38.60%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:   37 RIAFKVVGYGGPTVILVKERGTGAVWGGCADSPWKESNSFYGGEASFLMRLEPDFKI 207
            R+   ++GY GPT+I+++E  T  ++G    S WKES  FYG    F+ +L P   I
Sbjct:   74 RLQNALLGYSGPTLIVIQESATSGIFGAFTSSQWKESKDFYGNSDCFIFQLTPSAAI 130
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BLAST of mRNA_S-dermatodea_contig79938.16181.1 vs. uniprot
Match: A0A7S2XU00_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XU00_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 2.580e-5
Identity = 24/53 (45.28%), Postives = 31/53 (58.49%), Query Frame = 1 
Query:   37 RIAFKVVGYGGPTVILVKERGTGAVWGGCADSPWKESNSFYGGEASFLMRLEP 195
            +I   ++GYGGPTV+L++       +G    S WKES  FYG   SFL R EP
Sbjct:  354 QIKMALIGYGGPTVLLIRPTTGKGAFGYFTTSFWKESRHFYGDSDSFLFRAEP 406
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig79938.16181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JM32_9PHAE5.780e-2986.44TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S3YII2_HETAK3.860e-1248.53Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YL28_9STRA1.980e-1145.00TLD-domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9CZC0_9STRA8.200e-749.09TLDc domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7S2RCF4_9STRA1.700e-638.60Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A7S2XU00_9STRA2.580e-545.28Hypothetical protein n=1 Tax=Attheya septentrional... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig79938contigS-dermatodea_contig79938:91..306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size186
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925312.4913604-UTR-S-dermatodea_contig79938:90..1201622925312.4913604-UTR-S-dermatodea_contig79938:90..120Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig79938 91..120 +
1694079847.648381-UTR-S-dermatodea_contig79938:90..1201694079847.648381-UTR-S-dermatodea_contig79938:90..120Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig79938 91..120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925312.505969-CDS-S-dermatodea_contig79938:120..3061622925312.505969-CDS-S-dermatodea_contig79938:120..306Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig79938 121..306 +
1694079847.656092-CDS-S-dermatodea_contig79938:120..3061694079847.656092-CDS-S-dermatodea_contig79938:120..306Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig79938 121..306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig79938.16181.1prot_S-dermatodea_contig79938.16181.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig79938 121..306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig79938.16181.1

>prot_S-dermatodea_contig79938.16181.1 ID=prot_S-dermatodea_contig79938.16181.1|Name=mRNA_S-dermatodea_contig79938.16181.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=62bp
MPRIAFKVVGYGGPTVILVKERGTGAVWGGCADSPWKESNSFYGGEASFL
MRLEPDFKIIPS
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mRNA from alignment at S-dermatodea_contig79938:91..306+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig79938.16181.1 ID=mRNA_S-dermatodea_contig79938.16181.1|Name=mRNA_S-dermatodea_contig79938.16181.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at S-dermatodea_contig79938:91..306+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGGAAACCGCCACGCACACCCCTCAACCGATGCCCAGGATAGCGTTCAA
GGTGGTGGGGTACGGAGGTCCTACCGTGATCCTGGTGAAGGAGCGAGGGA
CGGGGGCCGTGTGGGGAGGCTGTGCCGATTCCCCCTGGAAGGAGAGCAAC
TCGTTCTACGGGGGTGAGGCGTCTTTCCTGATGCGCCTCGAGCCGGACTT
CAAGATTATCCCGTCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig79938:91..306+

>mRNA_S-dermatodea_contig79938.16181.1 ID=mRNA_S-dermatodea_contig79938.16181.1|Name=mRNA_S-dermatodea_contig79938.16181.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at S-dermatodea_contig79938:91..306+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCCAGGATAGCGTTCAAGGTGGTGGGGTACGGAGGTCCTACCGTGAT
CCTGGTGAAGGAGCGAGGGACGGGGGCCGTGTGGGGAGGCTGTGCCGATT
CCCCCTGGAAGGAGAGCAACTCGTTCTACGGGGGTGAGGCGTCTTTCCTG
ATGCGCCTCGAGCCGGACTTCAAGATTATCCCGTCTATGCCCAGGATAGC
GTTCAAGGTGGTGGGGTACGGAGGTCCTACCGTGATCCTGGTGAAGGAGC
GAGGGACGGGGGCCGTGTGGGGAGGCTGTGCCGATTCCCCCTGGAAGGAG
AGCAACTCGTTCTACGGGGGTGAGGCGTCTTTCCTGATGCGCCTCGAGCC
GGACTTCAAGATTATCCCGTCT
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