mRNA_S-dermatodea_contig79866.16177.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig79866.16177.1
Unique NamemRNA_S-dermatodea_contig79866.16177.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig79866.16177.1 vs. uniprot
Match: D7G9H6_ECTSI (Mitochondrial Processing Peptidase beta subunit (C-terminal region) Mitochondrial Processing Peptida n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H6_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 4.060e-43
Identity = 71/83 (85.54%), Postives = 78/83 (93.98%), Query Frame = 1 
Query:    1 QVILDYLHEVCFQKCGLGRTILGPPENVRSLTRQQLQDYITTHYTAPRMVVVGAGALEHGQLVEMADKCFGNLPRHPPQGSIV 249
            +VILD LHEVCF+KCGLGRTILGP EN+RSL++QQL DYITTHYTAPRMVVVGAGALEH +LVEMAD+CFGNLPR PPQGSIV
Sbjct:  218 EVILDNLHEVCFEKCGLGRTILGPAENIRSLSKQQLHDYITTHYTAPRMVVVGAGALEHEELVEMADRCFGNLPRDPPQGSIV 300
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BLAST of mRNA_S-dermatodea_contig79866.16177.1 vs. uniprot
Match: K8YV89_NANGC (Mitochondrial-processing peptidase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YV89_NANGC)

HSP 1 Score: 128 bits (322), Expect = 2.360e-33
Identity = 59/81 (72.84%), Postives = 68/81 (83.95%), Query Frame = 1 
Query:    1 QVILDYLHEVCFQKCGLGRTILGPPENVRSLTRQQLQDYITTHYTAPRMVVVGAGALEHGQLVEMADKCFGNLPRHPPQGS 243
            +VILDYLHE  FQ  GLGRTILGP ENV+SL R+ L+DYI THYTAPRMV+ GAGA+EHG+LVE+ADK FGNLPR  P G+
Sbjct:  185 EVILDYLHETAFQGTGLGRTILGPEENVKSLHREALKDYIRTHYTAPRMVIAGAGAIEHGRLVELADKYFGNLPRQAPPGA 265
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BLAST of mRNA_S-dermatodea_contig79866.16177.1 vs. uniprot
Match: A0A7S3Q7A4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q7A4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 5.880e-27
Identity = 50/80 (62.50%), Postives = 61/80 (76.25%), Query Frame = 1 
Query:    1 QVILDYLHEVCFQKCGLGRTILGPPENVRSLTRQQLQDYITTHYTAPRMVVVGAGALEHGQLVEMADKCFGNLPRHPPQG 240
            +++LD+LH   FQ  GLGRTILGP +N+RSLTR  L +YI THYTAPRMV+ GAGA++H QL EMAD  FG+LP  P  G
Sbjct:  178 ELVLDHLHATAFQGTGLGRTILGPEDNIRSLTRDDLAEYIHTHYTAPRMVIAGAGAIDHAQLCEMADANFGSLPSAPKAG 257
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BLAST of mRNA_S-dermatodea_contig79866.16177.1 vs. uniprot
Match: A0A7S3PRI1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PRI1_9STRA)

HSP 1 Score: 110 bits (276), Expect = 7.720e-27
Identity = 49/74 (66.22%), Postives = 59/74 (79.73%), Query Frame = 1 
Query:    1 QVILDYLHEVCFQKCGLGRTILGPPENVRSLTRQQLQDYITTHYTAPRMVVVGAGALEHGQLVEMADKCFGNLP 222
            +VI D LHE  +Q  GLGRTILGPPEN+ S+ R  L DYI THYTAPR+V+ GAGA+EH QLV++A+K FGNLP
Sbjct:  172 EVIFDRLHETAYQGTGLGRTILGPPENIMSINRDDLTDYIKTHYTAPRVVIAGAGAIEHSQLVDLAEKHFGNLP 245
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BLAST of mRNA_S-dermatodea_contig79866.16177.1 vs. uniprot
Match: A0A0P6ANR3_9CRUS (Putative Cytochrome b-c1 complex subunit 1, mitochondrial (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P6ANR3_9CRUS)

HSP 1 Score: 104 bits (260), Expect = 1.110e-26
Identity = 47/77 (61.04%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 QVILDYLHEVCFQKCGLGRTILGPPENVRSLTRQQLQDYITTHYTAPRMVVVGAGALEHGQLVEMADKCFGNLPRHP 231
            +VI D LHE  +   GLGRTILGP +N+++L R  L+DYI THYTAPRMVV GAGA++H QLV++A+  FGNLP  P
Sbjct:   86 EVIFDRLHETAYLGQGLGRTILGPIDNIKNLKRGDLEDYIATHYTAPRMVVAGAGAVDHSQLVQLAESAFGNLPSTP 162
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BLAST of mRNA_S-dermatodea_contig79866.16177.1 vs. uniprot
Match: M4BT98_HYAAE (Uncharacterized protein n=28 Tax=Peronosporaceae TaxID=4777 RepID=M4BT98_HYAAE)

HSP 1 Score: 109 bits (272), Expect = 3.420e-26
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    1 QVILDYLHEVCFQKCGLGRTILGPPENVRSLTRQQLQDYITTHYTAPRMVVVGAGALEHGQLVEMADKCFGNLPRHP 231
            +V+ D LHE  F   GLGRTILGP EN+R+L +  LQDYI THYTAPRMV+ GAGA++H QLVE+A K FG LP  P
Sbjct:  201 EVVFDRLHETAFMGNGLGRTILGPTENIRNLKKSDLQDYIATHYTAPRMVIAGAGAVDHSQLVELAQKSFGELPTTP 277
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BLAST of mRNA_S-dermatodea_contig79866.16177.1 vs. uniprot
Match: A0A1W0AA99_9STRA (Mitochondrial-processing peptidase subunit beta n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AA99_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.920e-26
Identity = 51/74 (68.92%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:    1 QVILDYLHEVCFQKCGLGRTILGPPENVRSLTRQQLQDYITTHYTAPRMVVVGAGALEHGQLVEMADKCFGNLP 222
            +VI D LHE  F   GLGRTILGP ENVRSL++  L DYI THYTAPRMVV GAGA+EH QLV++A   FGNLP
Sbjct:  161 EVIFDRLHETAFMGNGLGRTILGPEENVRSLSKADLLDYIATHYTAPRMVVAGAGAVEHSQLVDLAQNAFGNLP 234
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BLAST of mRNA_S-dermatodea_contig79866.16177.1 vs. uniprot
Match: UPI000711A336 (mitochondrial-processing peptidase subunit beta n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711A336)

HSP 1 Score: 108 bits (269), Expect = 7.240e-26
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 1 
Query:    1 QVILDYLHEVCFQKCGLGRTILGPPENVRSLTRQQLQDYITTHYTAPRMVVVGAGALEHGQLVEMADKCFGNLPRHPPQGSIV 249
            +V+ D LHE  +Q CGLG TILGP +N++ +TR  L +Y+ THYTAPR+VV GAG++ H  LVEMA+K FG+LP  P  G IV
Sbjct:  169 EVVFDLLHETAYQGCGLGLTILGPEKNIKRITRDDLVEYVQTHYTAPRVVVAGAGSINHQHLVEMAEKTFGHLPSKPTNGVIV 251
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BLAST of mRNA_S-dermatodea_contig79866.16177.1 vs. uniprot
Match: F0W4S6_9STRA (Mitochondrialprocessing peptidase subunit beta puta n=2 Tax=Albugo TaxID=65356 RepID=F0W4S6_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.040e-25
Identity = 47/74 (63.51%), Postives = 60/74 (81.08%), Query Frame = 1 
Query:    1 QVILDYLHEVCFQKCGLGRTILGPPENVRSLTRQQLQDYITTHYTAPRMVVVGAGALEHGQLVEMADKCFGNLP 222
            +V+ D LHE  +   GLGRTILGP EN+RSLT+Q L+DYI THYTA RMV+ GAGA++H +LV++A+K FGNLP
Sbjct:  172 EVVFDRLHETAYMGNGLGRTILGPQENIRSLTKQDLRDYIATHYTADRMVIAGAGAIDHQELVQLAEKSFGNLP 245
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BLAST of mRNA_S-dermatodea_contig79866.16177.1 vs. uniprot
Match: A0A7S2V5V4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5V4_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.140e-25
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    1 QVILDYLHEVCFQKCGLGRTILGPPENVRSLTRQQLQDYITTHYTAPRMVVVGAGALEHGQLVEMADKCFGNLP 222
            +VILDYLHEV +   GLGRTILGP ENVR L+R+ L  YI THYTAPRMVV GAGALEH +LV+MA+  F  LP
Sbjct:  175 EVILDYLHEVAYNGTGLGRTILGPEENVRGLSREDLLGYIQTHYTAPRMVVAGAGALEHQELVDMAEHFFSGLP 248
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig79866.16177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9H6_ECTSI4.060e-4385.54Mitochondrial Processing Peptidase beta subunit (C... [more]
K8YV89_NANGC2.360e-3372.84Mitochondrial-processing peptidase subunit beta n=... [more]
A0A7S3Q7A4_9STRA5.880e-2762.50Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3PRI1_9STRA7.720e-2766.22Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A0P6ANR3_9CRUS1.110e-2661.04Putative Cytochrome b-c1 complex subunit 1, mitoch... [more]
M4BT98_HYAAE3.420e-2663.64Uncharacterized protein n=28 Tax=Peronosporaceae T... [more]
A0A1W0AA99_9STRA4.920e-2668.92Mitochondrial-processing peptidase subunit beta n=... [more]
UPI000711A3367.240e-2656.63mitochondrial-processing peptidase subunit beta n=... [more]
F0W4S6_9STRA1.040e-2563.51Mitochondrialprocessing peptidase subunit beta put... [more]
A0A7S2V5V4_9STRA1.140e-2568.92Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig79866contigS-dermatodea_contig79866:476..724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue4.4e-23
Seed eggNOG ortholog112098.XP_008608265.1
Preferred nameMAS1
KEGG koko:K17732
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005746,GO:0005750,GO:0005758,GO:0005759,GO:0005773,GO:0005774,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006508,GO:0006605,GO:0006626,GO:0006627,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016485,GO:0016787,GO:0017087,GO:0017144,GO:0019538,GO:0019637,GO:0019693,GO:0019866,GO:0019867,GO:0022900,GO:0022904,GO:0030312,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034982,GO:0042773,GO:0042775,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045184,GO:0045275,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046907,GO:0046914,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055086,GO:0055114,GO:0070011,GO:0070013,GO:0070069,GO:0070469,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072521,GO:0072594,GO:0072655,GO:0098588,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0098805,GO:0140096,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.mitochondrial electron transport, ubiquinol to cytochrome c
EggNOG OGsCOG0612@1,KOG0960@2759
EC3.4.24.64
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial Processing Peptidase beta subunit
Ec32 orthologEc-28_000950.1
Exons1
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925312.186461-CDS-S-dermatodea_contig79866:475..7241622925312.186461-CDS-S-dermatodea_contig79866:475..724Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig79866 476..724 +
1694079847.4562364-CDS-S-dermatodea_contig79866:475..7241694079847.4562364-CDS-S-dermatodea_contig79866:475..724Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig79866 476..724 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig79866.16177.1prot_S-dermatodea_contig79866.16177.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig79866 476..724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig79866.16177.1

>prot_S-dermatodea_contig79866.16177.1 ID=prot_S-dermatodea_contig79866.16177.1|Name=mRNA_S-dermatodea_contig79866.16177.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
QVILDYLHEVCFQKCGLGRTILGPPENVRSLTRQQLQDYITTHYTAPRMV
VVGAGALEHGQLVEMADKCFGNLPRHPPQGSIV
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mRNA from alignment at S-dermatodea_contig79866:476..724+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig79866.16177.1 ID=mRNA_S-dermatodea_contig79866.16177.1|Name=mRNA_S-dermatodea_contig79866.16177.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=249bp|location=Sequence derived from alignment at S-dermatodea_contig79866:476..724+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTCATCCTCGACTACCTGCACGAAGTTTGCTTCCAAAAGTGCGGCCT
CGGACGGACCATTCTCGGCCCCCCGGAGAACGTCCGCAGCCTCACCCGCC
AGCAGCTGCAGGACTACATTACCACACACTACACTGCACCGCGGATGGTG
GTGGTAGGAGCTGGTGCCCTGGAGCACGGGCAACTCGTGGAGATGGCGGA
CAAGTGTTTCGGAAACCTTCCTCGCCACCCGCCGCAGGGATCGATCGTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig79866:476..724+

>mRNA_S-dermatodea_contig79866.16177.1 ID=mRNA_S-dermatodea_contig79866.16177.1|Name=mRNA_S-dermatodea_contig79866.16177.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig79866:476..724+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGTCATCCTCGACTACCTGCACGAAGTTTGCTTCCAAAAGTGCGGCCT
CGGACGGACCATTCTCGGCCCCCCGGAGAACGTCCGCAGCCTCACCCGCC
AGCAGCTGCAGGACTACATTACCACACACTACACTGCACCGCGGATGGTG
GTGGTAGGAGCTGGTGCCCTGGAGCACGGGCAACTCGTGGAGATGGCGGA
CAAGTGTTTCGGAAACCTTCCTCGCCACCCGCCGCAGGGATCGATCGTTC
AGGTCATCCTCGACTACCTGCACGAAGTTTGCTTCCAAAAGTGCGGCCTC
GGACGGACCATTCTCGGCCCCCCGGAGAACGTCCGCAGCCTCACCCGCCA
GCAGCTGCAGGACTACATTACCACACACTACACTGCACCGCGGATGGTGG
TGGTAGGAGCTGGTGCCCTGGAGCACGGGCAACTCGTGGAGATGGCGGAC
AAGTGTTTCGGAAACCTTCCTCGCCACCCGCCGCAGGGATCGATCGTT
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