mRNA_S-dermatodea_contig7984.16173.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig7984.16173.1
Unique NamemRNA_S-dermatodea_contig7984.16173.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig7984.16173.1 vs. uniprot
Match: D7G0W8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0W8_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.920e-17
Identity = 36/55 (65.45%), Postives = 48/55 (87.27%), Query Frame = 2 
Query:    2 KLWSAGTASKSGA--QSSYELIYSGDKVVLNKDGKMKWSSSLKSLPKHMKPWPFS 160
            KLW+AGT +K G   ++ YEL+Y+GD+VVLNKDGK+KWSSS+KSLPK+M+PWP +
Sbjct:  177 KLWTAGTGAKGGGGKEAFYELVYTGDRVVLNKDGKVKWSSSVKSLPKNMRPWPLA 231
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig7984.16173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0W8_ECTSI1.920e-1765.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig7984contigS-dermatodea_contig7984:6197..7690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size186
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig7984.16173.1prot_S-dermatodea_contig7984.16173.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig7984 6197..7631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925311.973636-CDS-S-dermatodea_contig7984:6196..62961622925311.973636-CDS-S-dermatodea_contig7984:6196..6296Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7984 6197..6296 +
1694079847.3563547-CDS-S-dermatodea_contig7984:6196..62961694079847.3563547-CDS-S-dermatodea_contig7984:6196..6296Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7984 6197..6296 +
1622925311.9895396-CDS-S-dermatodea_contig7984:7545..76311622925311.9895396-CDS-S-dermatodea_contig7984:7545..7631Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7984 7546..7631 +
1694079847.372606-CDS-S-dermatodea_contig7984:7545..76311694079847.372606-CDS-S-dermatodea_contig7984:7545..7631Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7984 7546..7631 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925312.0020077-UTR-S-dermatodea_contig7984:7631..76901622925312.0020077-UTR-S-dermatodea_contig7984:7631..7690Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig7984 7632..7690 +
1694079847.3836637-UTR-S-dermatodea_contig7984:7631..76901694079847.3836637-UTR-S-dermatodea_contig7984:7631..7690Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig7984 7632..7690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig7984.16173.1

>prot_S-dermatodea_contig7984.16173.1 ID=prot_S-dermatodea_contig7984.16173.1|Name=mRNA_S-dermatodea_contig7984.16173.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=62bp
EAVVRRHGLQERRAVVVRAHLQRRQGRPQQGWKDEVVVFPEKPAEAHETL
ALLRVDARCFP*
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mRNA from alignment at S-dermatodea_contig7984:6197..7690+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig7984.16173.1 ID=mRNA_S-dermatodea_contig7984.16173.1|Name=mRNA_S-dermatodea_contig7984.16173.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1494bp|location=Sequence derived from alignment at S-dermatodea_contig7984:6197..7690+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAGCTGTGGTCCGCCGGCACGGCCTCCAAGAGCGGCGCGCAGTCGTCGT
ACGAGCTCATCTACAGCGGCGACAAGGTCGTCCTCAACAAGGATGGAAAG
GTGGGGGTTACAGATCATGATCATATGGCTCCCCAGCCATTGGCAGAAGT
GGCTATCATACACGTATCATACAGGGCGCCGCGCTTTTGCCACAAGCACG
CCGCCGAGGAGTAAAAAAGGCGGGCTCGTGTGTGTGGTTCTTTTAATCGA
AAGTGCCTTCGCTAGACGGATGCCGGGTAGAGCGCGAATCGCGTTTTTGT
TTTTGGTACGGGTGGGGGGTGCGGAAAACGCCTCCCGTTGAGGAGGTACA
AGAGTGGTGGATATATTATCTCCTTCGTCCCTCGCCGGCTCAGCTCATCG
TGTACGTAGAACAATTGAAGACGTTGAGAGTTTTTGTTTTGCCCTTGCTG
TAGGATTTATGGGGTTGTTTGATTATAGCAGACCCAAGTGCCGAGGTATG
CCCTATCTGATTCAGACCGTGGGTTGTTGTGAATCAGTTCTTGTGTGCTA
TGCAGAAATTCAAAATTCCGTAGATTGGTTGATTTATCGCCTGACCACGA
GATACCGGGATCGTCAACCATTGGCGGGCCGGCTGAGGGTGGCCAATCTA
TCAATCAATCAATCGATCAATCAATCAACCAATCAATCAATCAATCAATC
AACCAATCAATCAATAAATCAATATAGCAAGATAAATGACGTAAATTCAC
TCAATGGTGCAGAGGTGTGTACAGTATCTCGGGATGTGTTCGTACAAAGT
TTTGCGGGTTGTGGTGTGAGCGGCATACTACCCGTCGATAAGTACGGTCT
ATGTCTGTTTGGATACGACATACGTTCAACATAAGTACCCCCCCTCATGA
TATAATTTATATTTCAAACCACAAAGCGAGCATTGGGGGCCAACTATTTT
GCATGGAATAAATCGGTCCAACCTAACCCTACGGAGGTTAATGTTAGTGC
GTGATGCTACAAGTGTGGTCTGTGAGATTGTGTATGTGTGTGTGTGTGTG
TTTTTTTTTTTAATTTTACGCCGGACTTTCCGAGGTCCATTTGTGGTTAC
AAAGGATCTCATCCCATCTCTCCGCGGTTCTTGCCTTAGTTTGTATCGCG
CACTAGGTCCGGTACTCGCGCAGCTCGCCGATTTCTCGGAGTTAGGCGAT
TATCATGCTTTTTGTCATCGACGGGTAGTGCTTAGCATACCGCCACTCTC
TCCTGGCTGGCTTCCGCGAAAGCGGGCTATTGATTGATCGAAGCGGTCTG
AGACAACGGCGTCACCACTAATCCCCTTGACCGCTGTCATGTCGCGCAGA
TGAAGTGGTCGTCTTCCCTGAAAAGCCTGCCGAAGCACATGAAACCCTGG
CCCTTCTCCGCGTAGACGCACGCTGCTTCCCTTGATGCGTAGATAAGGGG
TGAGGGTAACGCCGTGTTGTTGGTGTGATTTTGTTAAATAGCGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig7984:6197..7690+

>mRNA_S-dermatodea_contig7984.16173.1 ID=mRNA_S-dermatodea_contig7984.16173.1|Name=mRNA_S-dermatodea_contig7984.16173.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at S-dermatodea_contig7984:6197..7690+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAAGCTGTGGTCCGCCGGCACGGCCTCCAAGAGCGGCGCGCAGTCGTCGT
ACGAGCTCATCTACAGCGGCGACAAGGTCGTCCTCAACAAGGATGGAAAG
GAAGCTGTGGTCCGCCGGCACGGCCTCCAAGAGCGGCGCGCAGTCGTCGT
ACGAGCTCATCTACAGCGGCGACAAGGTCGTCCTCAACAAGGATGGAAAG
ATGAAGTGGTCGTCTTCCCTGAAAAGCCTGCCGAAGCACATGAAACCCTG
GCCCTTCTCCGCGTAGACGCACGCTGCTTCCCTTGAATGAAGTGGTCGTC
TTCCCTGAAAAGCCTGCCGAAGCACATGAAACCCTGGCCCTTCTCCGCGT
AGACGCACGCTGCTTCCCTTGA
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