mRNA_S-dermatodea_contig7974.16164.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig7974.16164.1 vs. uniprot
Match: D7FUQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ1_ECTSI) HSP 1 Score: 375 bits (964), Expect = 1.770e-127 Identity = 248/301 (82.39%), Postives = 260/301 (86.38%), Query Frame = 1
Query: 1 VTVPPKGEIFHAPTEDTERAVVTMKNNGVIPSDVSVRMWLEVVEETCRRDEARVQQAIAVEWGKRQSGQQQHXXXXXXXXXXNAPPAVSSNGAEPQVEQEEKDDATSNGEPRASAPAAXXXXXXXXXXXXDMTLAQQHREQRRQLQQLLGEELQLKLSMAATEGGAGHAQAEEAAAGGASGAAGESXXXXXXXXXXXXAAAAXXXXXXXXQAEPTDQEGVRPGPEEALWKMRRP-PVAPQPKSEGARVGSVKPRPRRGRAAGSMEERLPRRPAVRSVLYLRAFEDIVIPGFLHPFVWRKRG 900
VTV PKGE+FHAPTEDTERA+VTMKNNGVIPSDVSVRMWLEVVEETCRRDEARVQQAIAVEWGKRQSGQ+QH NAPPAVSS+GAEPQVEQEEKDDA S+GEPRASAPAAXXXXXXXXXXXXDM LAQQHREQRRQLQQ LGEELQ+K+S AATEGGAGHAQAEEAAAGGASGAAGES XXXXXXXXXXX XXXXXXX + V PGPEEALWK+RR PVA QPK EGARVGSVKPRPRRGRAAGS+EERLPRRPA RSV+YLR F+D GFLHPFV RKRG
Sbjct: 2 VTVSPKGEVFHAPTEDTERALVTMKNNGVIPSDVSVRMWLEVVEETCRRDEARVQQAIAVEWGKRQSGQEQHQPPQEQVAAGNAPPAVSSSGAEPQVEQEEKDDAASDGEPRASAPAAXXXXXXXXXXXXDMALAQQHREQRRQLQQQLGEELQVKVSHAATEGGAGHAQAEEAAAGGASGAAGESDXXXXXXXXXXXXXXXXXXXXXXDE--------VWPGPEEALWKLRRRLPVAAQPKLEGARVGSVKPRPRRGRAAGSIEERLPRRPAARSVVYLRTFKDTAKRGFLHPFVRRKRG 294
BLAST of mRNA_S-dermatodea_contig7974.16164.1 vs. uniprot
Match: D7FMZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMZ2_ECTSI) HSP 1 Score: 108 bits (269), Expect = 3.110e-25 Identity = 64/111 (57.66%), Postives = 76/111 (68.47%), Query Frame = 1
Query: 649 QEGVRPGPEEALWKMRR-PPVAPQPKSEGARVGSVKPRPRRGRAAGSMEERLPRRPAVRSVLYLRAFEDIVIPGFLHPFVWRKRGVRR----PRSPREQGREWHQTLVATA 966
++ V PGPEE LWK+RR PPVAP+ + EGAR+GS+KPRPRRG AG MEERL RRP RSV+Y RAFE + F+ R G R P + REQGR+WH T VATA
Sbjct: 21 EKWVGPGPEEPLWKLRRTPPVAPRRELEGARLGSIKPRPRRGPVAGRMEERLSRRPVTRSVVYRRAFEGLA-------FITRSCGGRGLFGVPATLREQGRQWHATSVATA 124
BLAST of mRNA_S-dermatodea_contig7974.16164.1 vs. uniprot
Match: A0A6H5KEJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ2_9PHAE) HSP 1 Score: 112 bits (279), Expect = 1.980e-24 Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 1
Query: 658 VRPGPEEALWKMRR-PPVAPQPKSEGARVGSVKPRPRRGRAAGSMEERLPRRPAVRSVLYLRAFE 849
V PGPEEALWK+RR PPVAPQPKSEGARVGSVKPRPRRGRAAGSMEERLPRRPAVRSVLY R FE
Sbjct: 266 VGPGPEEALWKLRRRPPVAPQPKSEGARVGSVKPRPRRGRAAGSMEERLPRRPAVRSVLYGRTFE 330
BLAST of mRNA_S-dermatodea_contig7974.16164.1 vs. uniprot
Match: A0A6H5L0N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N7_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 4.570e-21 Identity = 60/84 (71.43%), Postives = 65/84 (77.38%), Query Frame = 1
Query: 727 EGARVGSVKPRPRRGRAAGSMEERLPRRPAVRSVLYLRAFEDIVIPGFLHPFVWRKRG----VRRPRSPREQGREWHQTLVATA 966
E ARVGSVKPRPRRG AAGSMEERLPRRP VRS+L+LRA ED+ +PG F R G VRR RSPREQGRE H+TLVATA
Sbjct: 51 EAARVGSVKPRPRRGGAAGSMEERLPRRPVVRSMLHLRASEDM-LPG--RAFFARSCGGRGVVRRTRSPREQGREGHETLVATA 131
BLAST of mRNA_S-dermatodea_contig7974.16164.1 vs. uniprot
Match: A0A6H5JIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIQ0_9PHAE) HSP 1 Score: 87.0 bits (214), Expect = 2.110e-16 Identity = 48/84 (57.14%), Postives = 50/84 (59.52%), Query Frame = 3
Query: 714 PAEVGGXXXXXXXXXXXEGAGGGQHGGETPTEARSQERSLPEGF*RYCHTGLSSPVRVEEEGCSASALPSRTRARVAPDLGGNC 965
P GG EG GGG HGG EAR Q+R LPE C GLSSPVR E+EGCSAS LPSRTRA V DLGGNC
Sbjct: 156 PESTGGAGHAQAEPADQEGEGGGLHGGHALAEARGQKRGLPE---ICCQAGLSSPVRAEKEGCSASPLPSRTRATVTRDLGGNC 236
BLAST of mRNA_S-dermatodea_contig7974.16164.1 vs. uniprot
Match: A0A6H5JRC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC9_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 4.160e-16 Identity = 78/162 (48.15%), Postives = 81/162 (50.00%), Query Frame = 2
Query: 479 LRPRVEPVMPKPRRPPPVEPRAQPERAXXXXXXXXXXXXXXQXXXARAVMPKPSQRTRRG*GRDRRRLCGK*GGHRWRPSRSRRGRGWGRSSPGRGGGGRRAAWRRDSHGGPQSGAFST*GLLKILSYRAFFTRSCGGRGVFGVRAPLENKGESGTRPWWQL 964
+ P VEP RPPPVE RAQPERA XXXXXX XXX VMPKPSQ TRRG R G R RR + R AF +L RAF TRSCGGRGVFGV APLENKGESGTRPWWQL
Sbjct: 114 MSPPVEP------RPPPVEIRAQPERARVGSSKPKXXXXXXXXXXXXXVMPKPSQPTRRG-----------------------RAEGCTEERLSRRPAARRVVYWR---------AFED-----VLPGRAFVTRSCGGRGVFGVPAPLENKGESGTRPWWQL 232
BLAST of mRNA_S-dermatodea_contig7974.16164.1 vs. uniprot
Match: A0A6H5JF72_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF72_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 2.790e-11 Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query: 700 PPVAPQPKSEGARVGSVKPRPRRGRAAGSMEERLPRRPAVRSVLYLRAFE 849
PP+ P+PKS+GARV SVKPRPRRGRA G EERLPRRPA RSV+Y RAFE
Sbjct: 3 PPMEPRPKSKGARVESVKPRPRRGRAEGCTEERLPRRPAARSVVYQRAFE 52
BLAST of mRNA_S-dermatodea_contig7974.16164.1 vs. uniprot
Match: A0A6H5JP68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP68_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 1.080e-10 Identity = 43/64 (67.19%), Postives = 45/64 (70.31%), Query Frame = 3
Query: 657 GEAGTGGGSVENE-EATGGAPAEVGGXXXXXXXXXXXEGAGGGQHGGETPTEARSQERSLPEGF 845
G A TGGGSVE E EAT GAPAEVGG EGAGGGQHGGE P EAR Q+R+LPEGF
Sbjct: 276 GGAETGGGSVEIEKEATSGAPAEVGGGEGGFGQAQAEEGAGGGQHGGEAPAEARGQKRNLPEGF 339
BLAST of mRNA_S-dermatodea_contig7974.16164.1 vs. uniprot
Match: A0A6H5JP41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP41_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 1.100e-10 Identity = 36/50 (72.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query: 700 PPVAPQPKSEGARVGSVKPRPRRGRAAGSMEERLPRRPAVRSVLYLRAFE 849
PPV P+P E R V P+PRRGRAAGSMEER PRRP VRSVLY+RAFE
Sbjct: 3 PPVEPRPPPERTRAEPVMPKPRRGRAAGSMEERHPRRPVVRSVLYMRAFE 52 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig7974.16164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig7974.16164.1 >prot_S-dermatodea_contig7974.16164.1 ID=prot_S-dermatodea_contig7974.16164.1|Name=mRNA_S-dermatodea_contig7974.16164.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=322bp VTVPPKGEIFHAPTEDTERAVVTMKNNGVIPSDVSVRMWLEVVEETCRRDback to top mRNA from alignment at S-dermatodea_contig7974:4811..6834- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig7974.16164.1 ID=mRNA_S-dermatodea_contig7974.16164.1|Name=mRNA_S-dermatodea_contig7974.16164.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2024bp|location=Sequence derived from alignment at S-dermatodea_contig7974:4811..6834- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig7974:4811..6834- >mRNA_S-dermatodea_contig7974.16164.1 ID=mRNA_S-dermatodea_contig7974.16164.1|Name=mRNA_S-dermatodea_contig7974.16164.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1932bp|location=Sequence derived from alignment at S-dermatodea_contig7974:4811..6834- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |