mRNA_S-dermatodea_contig7788.15992.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig7788.15992.1
Unique NamemRNA_S-dermatodea_contig7788.15992.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig7788.15992.1 vs. uniprot
Match: A0A6H5KU09_9PHAE (Peroxin-7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU09_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 5.680e-69
Identity = 108/159 (67.92%), Postives = 122/159 (76.73%), Query Frame = 1 
Query:   73 SVEFSPFEGERVAVATAQYFGIVGNGRLHVIDRHALSGG----------LREIRSFDTQAGLYDCAWSECHPRQLVTAGADGVVKLWDLATDDAFPVADWREHAQGKPEDASGVDWNLVSKDTFASSSWDGTVRVWHPGDPASSRTFHEHGQHPVYGAI 519
            +VEFSPF+GER+AVATAQYFGIVGNGRLH+  RH   GG           RE+RSFDTQAGL+DCAWSECHP Q+ TAGADG VKLWDL   D FPVADWREH Q    + SGVDWNLVSKD FAS+SWDG+V++W P    SS TF +HG+HPVYGAI
Sbjct:   15 AVEFSPFDGERLAVATAQYFGIVGNGRLHIFGRH---GGDVTNSSPAWEQRELRSFDTQAGLFDCAWSECHPHQMATAGADGQVKLWDLGAVDGFPVADWREHTQ----EVSGVDWNLVSKDLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYGAI 166
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BLAST of mRNA_S-dermatodea_contig7788.15992.1 vs. uniprot
Match: D7FIF0_ECTSI (Peroxin-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIF0_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 1.160e-68
Identity = 108/156 (69.23%), Postives = 120/156 (76.92%), Query Frame = 1 
Query:   67 ACSVEFSPFEGERVAVATAQYFGIVGNGRLHVIDRHA-------LSGGLREIRSFDTQAGLYDCAWSECHPRQLVTAGADGVVKLWDLATDDAFPVADWREHAQGKPEDASGVDWNLVSKDTFASSSWDGTVRVWHPGDPASSRTFHEHGQHPVYG 513
            A  VEFSPF+GERVAVATAQYFGIVGNGRLHV  RHA        +   RE+RSFDTQAGL+DCAWSECHP Q+ TAGADGVVKLWDL   D FPVADWREH Q    + SGVDWNLVSK  FAS+SWDG+V++W P    SS TF +HG+HPVYG
Sbjct:   16 AIHVEFSPFDGERVAVATAQYFGIVGNGRLHVFGRHAGDVADSSPAWQQRELRSFDTQAGLFDCAWSECHPHQMATAGADGVVKLWDLGAADGFPVADWREHTQ----EVSGVDWNLVSKGLFASASWDGSVKLWTPSAGVSSHTFRDHGRHPVYG 167
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BLAST of mRNA_S-dermatodea_contig7788.15992.1 vs. uniprot
Match: A0A225V9Y1_9STRA (Peroxin-7 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V9Y1_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.060e-45
Identity = 84/140 (60.00%), Postives = 101/140 (72.14%), Query Frame = 1 
Query:   73 SVEFSPFEGERVAVATAQYFGIVGNGRLHVIDRHALSGGLREIRSFDTQAGLYDCAWSECHPRQLVTAGADGVVKLWDLATDDAFPVADWREHAQGKPEDASGVDWNLVSKDTFASSSWDGTVRVWHPGDPASSRTFHEH 492
            SVEFSPF    +AV TAQYFGIVGNGR HV +    +GGL  IR+FDT  G+YDCAWSE H +QLV++ ADG VKLW L T D FP+ ++ EH Q    + SGV+WNLVSKD+FAS+SWDGTV++W P  P S  T  EH
Sbjct:   16 SVEFSPFVDNLIAVGTAQYFGIVGNGRQHVYEMLP-AGGLAPIRAFDTPQGVYDCAWSENHGQQLVSSCADGSVKLWHLQTRDQFPIQNYHEHKQ----EVSGVNWNLVSKDSFASASWDGTVKIWKPEVPHSILTLAEH 150
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BLAST of mRNA_S-dermatodea_contig7788.15992.1 vs. uniprot
Match: W2R913_PHYPN (Peroxin-7 n=14 Tax=Phytophthora TaxID=4783 RepID=W2R913_PHYPN)

HSP 1 Score: 163 bits (413), Expect = 1.940e-45
Identity = 81/136 (59.56%), Postives = 99/136 (72.79%), Query Frame = 1 
Query:   73 SVEFSPFEGERVAVATAQYFGIVGNGRLHVIDRHALSGGLREIRSFDTQAGLYDCAWSECHPRQLVTAGADGVVKLWDLATDDAFPVADWREHAQGKPEDASGVDWNLVSKDTFASSSWDGTVRVWHPGDPASSRT 480
            +VEFSPF    +AV TAQYFGIVGNGR HV +    +GGL  IR+FDT  G+YDCAWSE H +QLV++ ADG VKLW L T D FP+ ++ EH Q    + SGV+WNLVSKD+FAS+SWDGTV++W P  P S  T
Sbjct:   16 AVEFSPFVDNLIAVGTAQYFGIVGNGRQHVYEMLP-AGGLAPIRAFDTPQGIYDCAWSENHGQQLVSSCADGSVKLWHLQTRDQFPIQNYHEHKQ----EVSGVNWNLVSKDSFASASWDGTVKIWKPEVPHSILT 146
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BLAST of mRNA_S-dermatodea_contig7788.15992.1 vs. uniprot
Match: A0A662WRL8_9STRA (Peroxin-7 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WRL8_9STRA)

HSP 1 Score: 160 bits (404), Expect = 2.370e-44
Identity = 80/142 (56.34%), Postives = 101/142 (71.13%), Query Frame = 1 
Query:   64 QACSVEFSPFEGERVAVATAQYFGIVGNGRLHVIDRHALSGGLREIRSFDTQAGLYDCAWSECHPRQLVTAGADGVVKLWDLATDDAFPVADWREHAQGKPEDASGVDWNLVSKDTFASSSWDGTVRVWHPGDPASSRTFHE 489
            +A  VEFSPF    VAV TAQYFGIVGNGR HV +    +GGL  +R+FDT  G+YDCAWSE H +QLV++ A+G +KLW L T D FP+ ++ EH Q    + SGV+WNLV+KD+FAS+SWDGTV++W P  P S  T  E
Sbjct:   44 EARHVEFSPFMDNLVAVGTAQYFGIVGNGRQHVYEMLP-AGGLAPVRAFDTPEGVYDCAWSENHGQQLVSSCANGSLKLWHLQTRDQFPIQNYHEHKQ----EVSGVNWNLVAKDSFASASWDGTVKIWKPEVPHSLLTLAE 180
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BLAST of mRNA_S-dermatodea_contig7788.15992.1 vs. uniprot
Match: H3HBK4_PHYRM (Peroxin-7 n=2 Tax=Phytophthora TaxID=4783 RepID=H3HBK4_PHYRM)

HSP 1 Score: 162 bits (410), Expect = 1.250e-43
Identity = 80/136 (58.82%), Postives = 98/136 (72.06%), Query Frame = 1 
Query:   73 SVEFSPFEGERVAVATAQYFGIVGNGRLHVIDRHALSGGLREIRSFDTQAGLYDCAWSECHPRQLVTAGADGVVKLWDLATDDAFPVADWREHAQGKPEDASGVDWNLVSKDTFASSSWDGTVRVWHPGDPASSRT 480
            SVEFSPF    VA+ TAQYFGIVGNGR HV +    +GGL  +R+FDT  G+YDCAWSE H +QLV++ ADG VKLW L T D FP+  + EH Q    + SGV+WNLVSKD+FAS+SWDG+V++W P  P S  T
Sbjct:   16 SVEFSPFVDNLVAIGTAQYFGIVGNGRQHVYEMLP-AGGLAPVRAFDTPQGVYDCAWSENHGQQLVSSCADGSVKLWHLQTRDQFPIQSYHEHKQ----EVSGVNWNLVSKDSFASASWDGSVKIWKPDVPHSILT 146
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BLAST of mRNA_S-dermatodea_contig7788.15992.1 vs. uniprot
Match: A0A8J5J2Y4_9STRA (WW domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J2Y4_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.910e-43
Identity = 82/139 (58.99%), Postives = 100/139 (71.94%), Query Frame = 1 
Query:   73 SVEFSPFEGERVAVATAQYFGIVGNGRLHVIDRHALSGGLREIRSFDTQAGLYDCAWSECHPRQLVTAGADGVVKLWDLATDDAFPVADWREHAQGKPEDASGVDWNLVSKDTFASSSWDGTVRVWHPGDPASSRTFHE 489
            +VEFSPF    VAV TAQYFGIVGNGR HV +    +GGL  IR+FDT  G+YDCAWSE + +QLV++ ADG VKLW L T D FP+ ++ EH Q    + SGV+WNLVSKD+FAS+SWDGTV++W P  P S  T  E
Sbjct:   21 AVEFSPFVDNLVAVGTAQYFGIVGNGRQHVYEMLP-AGGLAPIRAFDTPQGVYDCAWSENNGQQLVSSCADGSVKLWHLQTRDQFPIQNYHEHKQ----EVSGVNWNLVSKDSFASASWDGTVKIWKPEVPHSVLTLAE 154
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BLAST of mRNA_S-dermatodea_contig7788.15992.1 vs. uniprot
Match: A0A0P1A7Q7_PLAHL (Peroxin-7 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7Q7_PLAHL)

HSP 1 Score: 160 bits (404), Expect = 9.690e-43
Identity = 79/136 (58.09%), Postives = 98/136 (72.06%), Query Frame = 1 
Query:   73 SVEFSPFEGERVAVATAQYFGIVGNGRLHVIDRHALSGGLREIRSFDTQAGLYDCAWSECHPRQLVTAGADGVVKLWDLATDDAFPVADWREHAQGKPEDASGVDWNLVSKDTFASSSWDGTVRVWHPGDPASSRT 480
            SVEFSPF    VAV TAQYFGIVGNGR HV +    SGG   IR+FDT  G+YDCAWSE + +QLV++ ADG +KLW L T D FP+ ++ EH +    + SGV+WNL+SKD+FAS+SWDGTV++W P  P S  T
Sbjct:   16 SVEFSPFVDNLVAVGTAQYFGIVGNGRQHVYEMLP-SGGFAPIRAFDTPQGVYDCAWSENNGQQLVSSCADGSIKLWHLQTRDQFPIRNFHEHVK----EVSGVNWNLISKDSFASASWDGTVKIWKPEAPHSIMT 146
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BLAST of mRNA_S-dermatodea_contig7788.15992.1 vs. uniprot
Match: D0NPH8_PHYIT (Peroxin-7 n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NPH8_PHYIT)

HSP 1 Score: 160 bits (405), Expect = 1.280e-42
Identity = 80/128 (62.50%), Postives = 95/128 (74.22%), Query Frame = 1 
Query:   73 SVEFSPFEGERVAVATAQYFGIVGNGRLHVIDRHALSGGLREIRSFDTQAGLYDCAWSECHPRQLVTAGADGVVKLWDLATDDAFPVADWREHAQGKPEDASGVDWNLVSKDTFASSSWDGTVRVWHP 456
            +VEFSPF    VAV TAQYFGIVGNGR HV +    +GGL  IR FDT  G+YDCAWSE H +QLV++ ADG VKLW L T D FP+ ++ EH Q    + SGV+WNLVSKD+FAS+SWDGTV+VW P
Sbjct:   16 AVEFSPFVDNLVAVGTAQYFGIVGNGRKHVYEMLP-AGGLAPIRVFDTPQGVYDCAWSENHGQQLVSSCADGSVKLWHLQTRDEFPIQNYHEHKQ----EVSGVNWNLVSKDSFASASWDGTVKVWTP 138
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BLAST of mRNA_S-dermatodea_contig7788.15992.1 vs. uniprot
Match: A0A484E8Q9_BRELC (Peroxin-7 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E8Q9_BRELC)

HSP 1 Score: 159 bits (401), Expect = 5.400e-42
Identity = 81/139 (58.27%), Postives = 96/139 (69.06%), Query Frame = 1 
Query:   73 SVEFSPFEGERVAVATAQYFGIVGNGRLHVIDRHALSGGLREIRSFDTQAGLYDCAWSECHPRQLVTAGADGVVKLWDLATDDAFPVADWREHAQGKPEDASGVDWNLVSKDTFASSSWDGTVRVWHPGDPASSRTFHE 489
            SVEFSPF    VAV TAQYFGI+GNGR HV +     GGL  IR+FDT  G+YDCAWSE H +QLV++ ADG +KLW L T D FP+ ++ EH Q    + SGV WNLVSKD FAS+SWD TV++W P  P S  T  E
Sbjct:   16 SVEFSPFVDNYVAVGTAQYFGIIGNGRQHVYEMLP-DGGLIPIRAFDTPQGIYDCAWSEKHGQQLVSSCADGSLKLWHLQTRDQFPIQNYHEHKQ----EVSGVTWNLVSKDLFASASWDTTVKIWKPEIPHSIMTLTE 149
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig7788.15992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU09_9PHAE5.680e-6967.92Peroxin-7 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxI... [more]
D7FIF0_ECTSI1.160e-6869.23Peroxin-7 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A225V9Y1_9STRA1.060e-4560.00Peroxin-7 n=1 Tax=Phytophthora megakarya TaxID=479... [more]
W2R913_PHYPN1.940e-4559.56Peroxin-7 n=14 Tax=Phytophthora TaxID=4783 RepID=W... [more]
A0A662WRL8_9STRA2.370e-4456.34Peroxin-7 n=2 Tax=Nothophytophthora sp. Chile5 Tax... [more]
H3HBK4_PHYRM1.250e-4358.82Peroxin-7 n=2 Tax=Phytophthora TaxID=4783 RepID=H3... [more]
A0A8J5J2Y4_9STRA2.910e-4358.99WW domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A0P1A7Q7_PLAHL9.690e-4358.09Peroxin-7 n=1 Tax=Plasmopara halstedii TaxID=4781 ... [more]
D0NPH8_PHYIT1.280e-4262.50Peroxin-7 n=1 Tax=Phytophthora infestans (strain T... [more]
A0A484E8Q9_BRELC5.400e-4258.27Peroxin-7 n=1 Tax=Bremia lactucae TaxID=4779 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig7788contigS-dermatodea_contig7788:217..4633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.1
Seed ortholog evalue1.8e-56
Seed eggNOG ortholog2880.D7FIF0
Preferred namePEX7
KEGG koko:K13341
KEGG TC3.A.20.1
KEGG Pathwayko04146,map04146
GOsGO:0000151,GO:0000268,GO:0001501,GO:0001503,GO:0001764,GO:0001958,GO:0003674,GO:0005048,GO:0005053,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005782,GO:0005829,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006662,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007031,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008152,GO:0008610,GO:0008611,GO:0009056,GO:0009058,GO:0009062,GO:0009653,GO:0009887,GO:0009987,GO:0015031,GO:0015833,GO:0015919,GO:0016020,GO:0016042,GO:0016043,GO:0016054,GO:0016477,GO:0016558,GO:0016560,GO:0017038,GO:0018904,GO:0019395,GO:0019752,GO:0019899,GO:0022008,GO:0030154,GO:0030258,GO:0031090,GO:0031461,GO:0031903,GO:0031907,GO:0031974,GO:0032501,GO:0032502,GO:0032787,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034440,GO:0034613,GO:0036075,GO:0040011,GO:0042277,GO:0042579,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046395,GO:0046485,GO:0046504,GO:0046907,GO:0046983,GO:0048513,GO:0048699,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051674,GO:0055085,GO:0055114,GO:0060348,GO:0060349,GO:0060350,GO:0065002,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:0080008,GO:0097384,GO:0098588,GO:0098805,GO:1901503,GO:1901575,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.peroxisome matrix targeting signal-2 binding
EggNOG OGsKOG0277@1,KOG0277@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons7
Model size734
Cds size732
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925299.2646577-CDS-S-dermatodea_contig7788:216..2911622925299.2646577-CDS-S-dermatodea_contig7788:216..291Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7788 217..291 +
1694079838.6805458-CDS-S-dermatodea_contig7788:216..2911694079838.6805458-CDS-S-dermatodea_contig7788:216..291Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7788 217..291 +
1622925299.2862968-CDS-S-dermatodea_contig7788:656..7791622925299.2862968-CDS-S-dermatodea_contig7788:656..779Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7788 657..779 +
1694079838.7016745-CDS-S-dermatodea_contig7788:656..7791694079838.7016745-CDS-S-dermatodea_contig7788:656..779Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7788 657..779 +
1622925299.2987258-CDS-S-dermatodea_contig7788:1991..20761622925299.2987258-CDS-S-dermatodea_contig7788:1991..2076Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7788 1992..2076 +
1694079838.7174382-CDS-S-dermatodea_contig7788:1991..20761694079838.7174382-CDS-S-dermatodea_contig7788:1991..2076Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7788 1992..2076 +
1622925299.3094318-CDS-S-dermatodea_contig7788:2510..25991622925299.3094318-CDS-S-dermatodea_contig7788:2510..2599Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7788 2511..2599 +
1694079838.7308028-CDS-S-dermatodea_contig7788:2510..25991694079838.7308028-CDS-S-dermatodea_contig7788:2510..2599Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7788 2511..2599 +
1622925299.3206587-CDS-S-dermatodea_contig7788:3067..32061622925299.3206587-CDS-S-dermatodea_contig7788:3067..3206Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7788 3068..3206 +
1694079838.7390835-CDS-S-dermatodea_contig7788:3067..32061694079838.7390835-CDS-S-dermatodea_contig7788:3067..3206Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7788 3068..3206 +
1622925299.3316703-CDS-S-dermatodea_contig7788:3712..38131622925299.3316703-CDS-S-dermatodea_contig7788:3712..3813Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7788 3713..3813 +
1694079838.7555137-CDS-S-dermatodea_contig7788:3712..38131694079838.7555137-CDS-S-dermatodea_contig7788:3712..3813Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7788 3713..3813 +
1622925299.3408468-CDS-S-dermatodea_contig7788:4513..46331622925299.3408468-CDS-S-dermatodea_contig7788:4513..4633Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7788 4514..4633 +
1694079838.7657757-CDS-S-dermatodea_contig7788:4513..46331694079838.7657757-CDS-S-dermatodea_contig7788:4513..4633Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig7788 4514..4633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig7788.15992.1prot_S-dermatodea_contig7788.15992.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig7788 217..4633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig7788.15992.1

>prot_S-dermatodea_contig7788.15992.1 ID=prot_S-dermatodea_contig7788.15992.1|Name=mRNA_S-dermatodea_contig7788.15992.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=244bp
LPSSRKSSSGTSKIRRLCLFTQACSVEFSPFEGERVAVATAQYFGIVGNG
RLHVIDRHALSGGLREIRSFDTQAGLYDCAWSECHPRQLVTAGADGVVKL
WDLATDDAFPVADWREHAQGKPEDASGVDWNLVSKDTFASSSWDGTVRVW
HPGDPASSRTFHEHGQHPVYGAIWCPVSASQLLSVSGDGTARVLDVNAPN
AGVVLDGHGGQEVLAGDWDKYDHPVVATGCADGAVRTWDLRLPR
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mRNA from alignment at S-dermatodea_contig7788:217..4633+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig7788.15992.1 ID=mRNA_S-dermatodea_contig7788.15992.1|Name=mRNA_S-dermatodea_contig7788.15992.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4417bp|location=Sequence derived from alignment at S-dermatodea_contig7788:217..4633+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGCCAAGCTCACGGAAGTCGTCGAGCGGAACGTCCAAGATTCGGAGACT
GTGTCTGTTTACGCAAGCTTGCTCGGTGTGTGCATACAGACAGCAGTTGT
ACGTTGCTTCTTGTCAGTAGTGGAGATGTACTGCAGCTCGCGAAATACTC
GCGCGCGCTTCGCGCGCGCAGTTTAATTCTCGCGACAGGCTTCTCTATGG
AATCGGAGCCGCTCTTTGCGCATCTGACCCTAGTCGCGTCGATCGGCTTC
GCGTGTGCAAATCTACTATGACACAGTACTACAGTTGTATGTATCAATCA
AATCAATCAATACACCTCACACAAGTATGTATACTGTACACTTTCTCTGC
GCTGCCAATCGCAGAACTGTCGCTCAGTCGAACTGAACCGTGCACCTCGA
CGTCTGCTTTGCTCGACATCTACCGTAAAAATTCTTCCAGGTGGAGTTCA
GCCCGTTCGAAGGCGAGCGAGTGGCGGTGGCCACGGCGCAGTACTTCGGC
ATAGTCGGCAACGGGCGGCTACACGTCATCGACCGGCATGCGTTGTCCGG
CGGGTTGAGAGAGGCGAGACTTGCGGACGTCGAGGTGGCAGGGCTTTAAC
TTTTGGGTATTTTTGTCCCCACGGTGTGGTGGGCATTATCGTTGCACATG
GGGTACTACGAGAATGCAGGCGGTCGGACGGGTCCGACTTGAAAGCTTCT
CTGTGCCGACCGTTTTGTTGAAGGTTATGATTCGCTTGCTCGCTCTGGCG
ATGTGCATCATCATCGTCACCATTGCATCATCGTCAACCATCACCTCTGA
CATTTCGCATGTATTTATTTGCAAAGGCGTGTACAAGTACCCGTTTTACA
CGGCTGCACCTGTAACTCTGGTCAGAATATACTTATATATGCATAGAGCG
ATGCATAGAACCGCCGACCAGAGTACAGGTACAACCGCGCGAAATACCGC
AACATGTCGAAAGCGCTGTTTCGGTTCTGAAGCGGGGATAAACCTCTCGC
AGGTAATATATAAATACATACCAGGTACATCATACATACTATACAACATA
CATATGTCATTGACAGCATCGATGAATTCACCACGGAATGTGTCCGCGAA
ACCCCTTCCGCGGAGTTTAAACCCCTTCCGCGGAGTTTTCCCAGCCAGTT
TGGACCGCGGGCGTCGGAAGGCCCGCTGTCACGGTAGCGCTGGAAGCATT
CTTTAGACGTAGTGGATACAACGTGCTGGGATAAATTATGGAGGTAGCGC
GCGGGCAGGGAATGGTGATTGCTGCTAGTGGCATCAATTGGCGTACGCCT
CGGCTGCTTTCCCCGATTGGCCCCGCGCCGTCGTGGACGTTGCTGCACAT
GTTGTATGATATGGGGAACGCACTCTCGCAGCTACAGCGTGGACGGCATG
GATGGATGACATCATATCGAAAGTTACCGGCGGCACCCCCTTCGGCCGTG
GATCTCTTCTACGGAAACGACTGGAAGAAGCCCAGGACGGAAGGGGGCTC
GTCGGTAATTTCCGAGCTGCCACCATCAACGCCGTCCATGGTAGAGCTTG
CGAACTTGTACAGCATCCTCCATACCACGCGTGCACCAACTTCCGAATGA
CCCGCGGCCAATCGGGAGAACGGCCTTAACCGCTAACCGCTTAAGGCCAC
CCGCACAGGCAATGCCACTCATACCCCCAACCCTAACCCTCGTGCCCCCC
ACTGTGGCTACGATGCGCGATGTGATAAAGCAAGTGCGGCGGCATGATAT
TCGGCCCTACCTTCCTATCCTTCAGATCCGGAGCTTCGACACACAAGCCG
GCCTGTACGACTGCGCCTGGAGTGAGTGCCATCCTCGACAGCTCGTCACC
GCCGGCGCAGGTACGGCGCAGGGGCAGCGCTCTCTACGCAATTTTAAACG
CCACATGAATGCGATAGTAGCTGCGTGAACTCGACGACAACAACTCCCAC
TTGCGCCAACCTGCGGAGCAAACGTGTAGGTTTTACACGCCGCTGTGCCT
TCCCTCCATGTGTGCTGTGGGTCAAGCCGATCTGGGTATACGAAAATTTG
GGCCTCCCTTGCCAACCCAGCGCATCTACAGAAATACTCGAAACCCGCGC
GTACTTGTATATTTTATCTCTACTCAATTCCCGCAGTTCTGTCACCAGTT
GGTTTGACGGCTTTCGTGCTCCTGCTCCAGACCCCCACGGGTATCGTCTC
GCTACTGACGTGATGCCGCTATTAAAGAGCCGCTCTTAAGACTCAAATAT
CAGTGCTATGGTGTCCCCTCCCTCCATGCCCGCGACAAGTCCAGATGGCG
TGGTGAAGCTGTGGGACTTGGCCACTGACGACGCGTTTCCTGTGGCGGAC
TGGAGGGAGCACGCCCAAGGCAAGCCGGAAGATGTCAATTTATGACCACG
TTCTTCGATGGCCTTCAACAGGAGTATGGCCTTGTAAGATGACCTCCAAC
GATGGCCTTCTGATATTTCATCCTTCTCTTTATACGATTTACTCTATTAT
GAACTTCCGACCGAGGTGATGGTCTCGGGTGAAAAGGCCGTAGTACAAGA
GAGGGCCTTTTAAGTTACAGTTCTAAACAGGACGGACGCCTCCAAAGAAA
CAGCTCGCGGTGAAGGGGGGGCTTGGTGGTATCACGCGCCGAACACAATT
CATCATTTTTGTGGCGGTGGTGGTGGACGTAGCTCTTCTGTTCTGCTCCT
ACTTGTTGTTTTGGCGCTTATCCCGTGCCCTGCAAGGCTCAGGAGTGTTT
GCCCATGCATGCGTTCCACCCCGCAACTCCCTCGAAATCCTCACACACAT
CTCTGATTTGTTCTCACGCCGGTGAACACCCCCCCCTTGCGTCTTGTAGA
GGCGTCGGGCGTGGACTGGAACCTGGTGTCGAAAGACACTTTCGCGTCGT
CCTCCTGGGACGGCACGGTGCGCGTGTGGCACCCAGGGGACCCGGCCTCG
TCTCGCACGTTTCACGAGCACGGACAGCATCCCGTCTACGGTGAGCGCTG
CGGCGTTGAATGATGTGGTACGATCGCGTGATGCCGAAGATCGAAGTCGG
GACCCTCTTGTCGTCAGGGGATGCCGCCGTGAGCAGTTTATCGGCTGAAG
CGAAGATGGCGCGTGGTTCGCCGTTCGTATCGTACGCAGTGTCACACGAC
CTAACGTTATTTGGGAAGCCCGTGGGAGCGATGTATGACCTGATGCAGCG
ATATCGTTTCCGCGAGCGACTCCAAGTACTGCCGTTTCTTCTCTTCCGTC
TAAATCAGCCGCTGAGCACGCGGGTGTGATACTGTGCGTAGCTCCATGAA
ACTCTTATTGTATTTGGTAGCTGCATCCGGATGCGCCACTCTTCATGTTT
AATACATTTTCAATATTAGAGCAAGCCCAAACTCTCATCCTGCCGCGCGA
CAGGTATACCTGGAAAACCATCAAACACCCCACGAAATGCGATAGCTCGA
TATTGAAACCCTAAGGGACGGCTGCTTCTTCCCGTGGCCATTGCAGGTGC
CATCTGGTGCCCCGTTAGCGCGTCGCAGCTGCTTTCTGTCTCGGGGGACG
GTACTGCGAGAGTCTTGGACGTCAACGCACCTAATGCAGGAGTAGTGGTG
AGTGGCGCAAGCTGGGGCATTTAAAATGTACTACGTCCGCTGCCGCGTTG
GAGCTGACCGTAGTAAAATATGGACCTGATGGAGAGGCGAGGGAGCAGTG
TCCGATTTCGATACCTCTTCTGGCGTTTTTCTATATCTGGGGTACTGTTT
CTTCTTTCTTGTACCATAGTAAGTACCAGATACGGTATTGTGTGTTGTAG
AAGTAGAACTATGATTAGTTGGTTTCTCCCTGACTCTTTGCGCATCTGAC
CACAAGTCGGGTCGGATTAAGCCGTTCAGCTCTATTTGTGCAAATCAATC
AATAAATAAACGGCCGAGTGCCTCCCCCACGCCGCACACCGCCTCCGGGC
GGCCTACGAAAGGCACGCGCTTGTAGAACCAAAGGAAGGTTTTCTTACCA
TATATAGTTCCGGCCGCCCTTGCGGGCGTTTTGTGGTTTACCTTTCATAG
CTGCGAGGTTGCATGCCACTATTAATTATGTGACAATGTGTTGGTGGATT
CAACGAACGAATGCCGCGATCTCGTTTAGAGGGCAGAACAGGCACAACAA
AGATGTGTGTCCTCGCCTGGGACCACCCGATCTCTGCCCGATGCACGAGC
CGCGATACAACGTTCTCCTACGTGGTAATTAACTAATGTCTTCGGATTCC
GGTCTTGACTCATAAACGCGGCGTCGCATCGGTGGTGGACTTGACAGCTG
GATGGGCATGGGGGACAAGAGGTCCTTGCGGGAGACTGGGACAAATACGA
CCACCCGGTCGTGGCCACTGGCTGTGCGGACGGGGCGGTGAGAACGTGGG
ACCTCCGCCTACCCAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig7788:217..4633+

>mRNA_S-dermatodea_contig7788.15992.1 ID=mRNA_S-dermatodea_contig7788.15992.1|Name=mRNA_S-dermatodea_contig7788.15992.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1464bp|location=Sequence derived from alignment at S-dermatodea_contig7788:217..4633+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGCCAAGCTCACGGAAGTCGTCGAGCGGAACGTCCAAGATTCGGAGACT
GTGTCTGTTTACGCAAGCTTGCTCGTTGCCAAGCTCACGGAAGTCGTCGA
GCGGAACGTCCAAGATTCGGAGACTGTGTCTGTTTACGCAAGCTTGCTCG
GTGGAGTTCAGCCCGTTCGAAGGCGAGCGAGTGGCGGTGGCCACGGCGCA
GTACTTCGGCATAGTCGGCAACGGGCGGCTACACGTCATCGACCGGCATG
CGTTGTCCGGCGGGTTGAGAGAGGTGGAGTTCAGCCCGTTCGAAGGCGAG
CGAGTGGCGGTGGCCACGGCGCAGTACTTCGGCATAGTCGGCAACGGGCG
GCTACACGTCATCGACCGGCATGCGTTGTCCGGCGGGTTGAGAGAGATCC
GGAGCTTCGACACACAAGCCGGCCTGTACGACTGCGCCTGGAGTGAGTGC
CATCCTCGACAGCTCGTCACCGCCGGCGCAGATCCGGAGCTTCGACACAC
AAGCCGGCCTGTACGACTGCGCCTGGAGTGAGTGCCATCCTCGACAGCTC
GTCACCGCCGGCGCAGATGGCGTGGTGAAGCTGTGGGACTTGGCCACTGA
CGACGCGTTTCCTGTGGCGGACTGGAGGGAGCACGCCCAAGGCAAGCCGG
AAGATATGGCGTGGTGAAGCTGTGGGACTTGGCCACTGACGACGCGTTTC
CTGTGGCGGACTGGAGGGAGCACGCCCAAGGCAAGCCGGAAGATGCGTCG
GGCGTGGACTGGAACCTGGTGTCGAAAGACACTTTCGCGTCGTCCTCCTG
GGACGGCACGGTGCGCGTGTGGCACCCAGGGGACCCGGCCTCGTCTCGCA
CGTTTCACGAGCACGGACAGCATCCCGTCTACGGCGTCGGGCGTGGACTG
GAACCTGGTGTCGAAAGACACTTTCGCGTCGTCCTCCTGGGACGGCACGG
TGCGCGTGTGGCACCCAGGGGACCCGGCCTCGTCTCGCACGTTTCACGAG
CACGGACAGCATCCCGTCTACGGTGCCATCTGGTGCCCCGTTAGCGCGTC
GCAGCTGCTTTCTGTCTCGGGGGACGGTACTGCGAGAGTCTTGGACGTCA
ACGCACCTAATGCAGGAGTAGTGGTGCCATCTGGTGCCCCGTTAGCGCGT
CGCAGCTGCTTTCTGTCTCGGGGGACGGTACTGCGAGAGTCTTGGACGTC
AACGCACCTAATGCAGGAGTAGTGCTGGATGGGCATGGGGGACAAGAGGT
CCTTGCGGGAGACTGGGACAAATACGACCACCCGGTCGTGGCCACTGGCT
GTGCGGACGGGGCGGTGAGAACGTGGGACCTCCGCCTACCCAGGCTGGAT
GGGCATGGGGGACAAGAGGTCCTTGCGGGAGACTGGGACAAATACGACCA
CCCGGTCGTGGCCACTGGCTGTGCGGACGGGGCGGTGAGAACGTGGGACC
TCCGCCTACCCAGG
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