mRNA_S-dermatodea_contig13724.2144.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13724.2144.1
Unique NamemRNA_S-dermatodea_contig13724.2144.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: D8LKX6_ECTSI (Similar to ubiquitin specific protease 48 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKX6_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 8.660e-36
Identity = 73/119 (61.34%), Postives = 85/119 (71.43%), Query Frame = 1
Query:    1 DHVRRKNCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTP----SRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRPS 345
            DHVR+KNCSNNPRCLYGLGEGK+GIWS  P LI  LGEDMSG +K  P+   S  +++  + G     G +  P P     R P GLKNLGATCYLNSQLQALFAN+ FR GV++WRPS
Sbjct:   14 DHVRKKNCSNNPRCLYGLGEGKEGIWSRKPALIAALGEDMSGMVKELPSE--STRAATAAAGGSSAGPGDAVVPFPPPRMQRQPTGLKNLGATCYLNSQLQALFANKAFRDGVFSWRPS 130          
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: A0A5D6XMC9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMC9_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.010e-18
Identity = 58/127 (45.67%), Postives = 71/127 (55.91%), Query Frame = 1
Query:    1 DHVRRK--------NCSNNPRCLYGLGEGKQGIWSANPGLIL-VLGEDMSGALKM----APTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRP 342
            DH R+K        NC+ NP CL+GLGE ++G+W A P L+  +LG+D    L+     AP   +S  SSSP +E G            S LP GL+NLGATCYLNS LQ LF N  FR  VY W P
Sbjct:   44 DHHRKKSKSAAALRNCAENPNCLFGLGEHQEGVW-AKPKLVQRLLGDDPREQLRAVYPDAPRRKNSA-SSSPAAESGA-----------SLLPCGLRNLGATCYLNSMLQTLFTNVAFREAVYRWEP 157          
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: A0A024U320_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U320_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.770e-17
Identity = 48/110 (43.64%), Postives = 60/110 (54.55%), Query Frame = 1
Query:   13 RKNCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRP 342
            R+NC +NP CL+GLGE   GIW  NP ++  LG D S  L+            SPVSE    E+  +        P GL+NLGATCY+NS +Q LF    FRR V+ W P
Sbjct:   67 RRNCQDNPNCLFGLGEYADGIWKTNPSVLADLGPDPSTMLR------------SPVSE----EDTNNNHDENGARPCGLRNLGATCYVNSMVQCLFMTMSFRRAVHEWEP 160          
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: A0A3R7JRC3_9STRA (USP domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JRC3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 4.770e-17
Identity = 49/122 (40.16%), Postives = 62/122 (50.82%), Query Frame = 1
Query:    1 DHVRRK--------NCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRP 342
            DH R+K        NC++NP CLYGLGE ++G+W AN  +  V G+D     +                  G  + G        ++P GL+NLGATCYLNS LQ LF N  FRR VY W P
Sbjct:   35 DHHRKKGKTVNVLRNCADNPNCLYGLGERQKGVWQANKLIRRVFGDDPRERRR------------------GFAKSGG-------KMPCGLRNLGATCYLNSMLQCLFVNLPFRRAVYEWEP 131          
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: A0A3F2RYI8_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RYI8_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 6.490e-17
Identity = 49/122 (40.16%), Postives = 62/122 (50.82%), Query Frame = 1
Query:    1 DHVRRK--------NCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRP 342
            DH R+K        NC++NP CLYGLGE ++G+W AN  +  V G+D     +                  G  + G        ++P GL+NLGATCYLNS LQ LF N  FRR VY W P
Sbjct:   35 DHHRKKGKAANVLRNCADNPNCLYGLGERQKGVWQANKLIRRVFGDDPRERRR------------------GFAKSGG-------KMPCGLRNLGATCYLNSMLQCLFVNLPFRRAVYEWEP 131          
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: A0A2D4BF54_PYTIN (Ubiquitin-specific protease, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF54_PYTIN)

HSP 1 Score: 83.6 bits (205), Expect = 2.270e-16
Identity = 50/114 (43.86%), Postives = 59/114 (51.75%), Query Frame = 1
Query:    4 HVRRKNCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRPS 345
            HV RKNC  NP CL+GLGE  +G+W     L  VLGED     +    ++              LE G      P   P GL+NLGATCYLNS LQ LF N  FRR V+ W P+
Sbjct:   51 HV-RKNCEANPNCLFGLGEYSKGVWQGAKLLRRVLGEDPRDLQRSFSVSS--------------LENG---DDXPRLAPCGLRNLGATCYLNSMLQCLFVNVPFRRAVFEWEPT 146          
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: A0A1V9ZY32_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZY32_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 4.180e-16
Identity = 45/109 (41.28%), Postives = 56/109 (51.38%), Query Frame = 1
Query:   19 NCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRPS 345
            NCS NP CLYGLGE  +GIW + P L+  LGED S +++       S                          P GL+NLGATCY+NS +Q LF +  FRR V+ W PS
Sbjct:   45 NCSENPNCLYGLGEYTEGIWKSVPELLKALGEDPSLSIRTEINQEKST-------------------------PCGLRNLGATCYVNSMVQVLFMDLAFRRAVHEWEPS 128          
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: A0A6A3WD98_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WD98_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.910e-16
Identity = 51/122 (41.80%), Postives = 60/122 (49.18%), Query Frame = 1
Query:    1 DHVRRK--------NCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRP 342
            DH RR+        NC++NP CLYGLGE ++G+W     L+ V G D        P A                  G +  PT    P GL+NLGATCYLNS LQ LF N  FRR VY W P
Sbjct:   33 DHHRRRGKAASALRNCADNPNCLYGLGERQKGVWRRESLLLRVFGPD--------PRARR-------------RGSGRAGRPT----PCGLRNLGATCYLNSMLQCLFVNLPFRRAVYEWEP 129          
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: A0A662X1Q3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X1Q3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.000e-16
Identity = 50/123 (40.65%), Postives = 61/123 (49.59%), Query Frame = 1
Query:    1 DHVRRK---------NCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRP 342
            DH R+K         NC +NP CL+GLGE ++GIW +   +  V G+D     +              V+  GVL            LP GL+NLGATCYLNS LQ LF N  FRR VY W P
Sbjct:  383 DHHRKKSKAAAGVLRNCESNPNCLFGLGERQKGIWQSKQLIRRVFGDDPRERQRS-------------VARDGVL------------LPCGLRNLGATCYLNSMLQCLFVNLPFRRAVYEWEP 480          
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: T0S3W8_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S3W8_SAPDV)

HSP 1 Score: 81.6 bits (200), Expect = 1.060e-15
Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 1
Query:   19 NCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRPS 345
            NCS NP C++GLGE  +GIW  +P ++  LG++ S A++                   V E+G S        P GL+NLGATCY+NS +Q LF +  FRR V+ W+P+
Sbjct:   51 NCSENPNCIFGLGEYMEGIWKTHPAVLDALGDNPSLAVRTR-----------------VTEDGPST-------PCGLRNLGATCYVNSMVQVLFMDLAFRRAVHEWKPN 135          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKX6_ECTSI8.660e-3661.34Similar to ubiquitin specific protease 48 n=1 Tax=... [more]
A0A5D6XMC9_9STRA4.010e-1845.67Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A024U320_9STRA4.770e-1743.64Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A3R7JRC3_9STRA4.770e-1740.16USP domain-containing protein n=3 Tax=Phytophthora... [more]
A0A3F2RYI8_9STRA6.490e-1740.16Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A2D4BF54_PYTIN2.270e-1643.86Ubiquitin-specific protease, putative n=1 Tax=Pyth... [more]
A0A1V9ZY32_9STRA4.180e-1641.28Ubiquitin carboxyl-terminal hydrolase (Fragment) n... [more]
A0A6A3WD98_9STRA7.910e-1641.80Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A662X1Q3_9STRA8.000e-1640.65Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
T0S3W8_SAPDV1.060e-1539.45Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13724contigS-dermatodea_contig13724:4279..4885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue1.6e-31
Seed eggNOG ortholog2880.D8LKX6
Preferred nameUSP48
KEGG koko:K02911,ko:K06255,ko:K11858
KEGG Pathwayko03010,ko04512,ko05161,ko05205,map03010,map04512,map05161,map05205
KEGG ModuleM00178
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0007275,GO:0008150,GO:0009791,GO:0010154,GO:0016020,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044464,GO:0045121,GO:0045202,GO:0045211,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070013,GO:0071944,GO:0097060,GO:0098589,GO:0098590,GO:0098794,GO:0098805,GO:0098857
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1863@2759
EC3.4.19.12
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko00535,ko01000,ko01002,ko03011,ko03029,ko04121,ko04147,ko04516
Hectar predicted targeting categoryother localisation
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924294.9044573-CDS-S-dermatodea_contig13724:4278..45541622924294.9044573-CDS-S-dermatodea_contig13724:4278..4554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13724 4279..4554 -
1694079157.9501169-CDS-S-dermatodea_contig13724:4278..45541694079157.9501169-CDS-S-dermatodea_contig13724:4278..4554Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13724 4279..4554 -
1622924294.9175456-CDS-S-dermatodea_contig13724:4816..48851622924294.9175456-CDS-S-dermatodea_contig13724:4816..4885Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13724 4817..4885 -
1694079157.9656231-CDS-S-dermatodea_contig13724:4816..48851694079157.9656231-CDS-S-dermatodea_contig13724:4816..4885Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13724 4817..4885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13724.2144.1prot_S-dermatodea_contig13724.2144.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13724 4279..4885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13724.2144.1

>prot_S-dermatodea_contig13724.2144.1 ID=prot_S-dermatodea_contig13724.2144.1|Name=mRNA_S-dermatodea_contig13724.2144.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=115bp
DHVRRKNCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTA
NSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALF
ANREFRRGVYAWRPS
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mRNA from alignment at S-dermatodea_contig13724:4279..4885-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13724.2144.1 ID=mRNA_S-dermatodea_contig13724.2144.1|Name=mRNA_S-dermatodea_contig13724.2144.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=607bp|location=Sequence derived from alignment at S-dermatodea_contig13724:4279..4885- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCACGTCAGAAGAAAAAACTGCTCCAACAACCCTCGCTGCCTCTATGG CCTAGGAGAAGGCAAACAGGTGAGAGCCGCAATGCAGCGAATCAATACCT CCAAGTTGTCTCTTCTACGGACCTTTTGAGAGTTTGGAGCAGTAAGCCTC ATTGGGTGTGCCGTGCCCAGCTGCGCTGCCAATGAAGTGTGAGTTTCAAA TCAACGATGCGAGATTGTAAGCGCCACGTCCACCGCGCGGCGCATTTTCT CTAACGCCTGCTGCTGTATAACGTCCACATTGATGGACATCACTGCTACA CCCTCGCGATAACGTTTGACTGGCCTTGCAGGGCATATGGAGCGCAAACC CAGGCCTCATCTTAGTCCTCGGGGAAGACATGTCGGGAGCGCTCAAGATG GCACCCACAGCAAATTCTTCAATAGATTCGTCCAGCCCCGTATCCGAAGG GGGGGTGTTGGAGGAGGGCGCTAGCGCGTCCCCTACCCCGTCCCGCCTCC CAGTGGGTCTAAAAAACCTGGGGGCAACGTGCTATCTGAATTCCCAGCTC CAGGCGTTGTTCGCGAACAGGGAATTCCGGAGGGGAGTCTACGCTTGGAG ACCGTCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13724:4279..4885-

>mRNA_S-dermatodea_contig13724.2144.1 ID=mRNA_S-dermatodea_contig13724.2144.1|Name=mRNA_S-dermatodea_contig13724.2144.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at S-dermatodea_contig13724:4279..4885- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACCACGTCAGAAGAAAAAACTGCTCCAACAACCCTCGCTGCCTCTATGG
CCTAGGAGAAGGCAAACAGGACCACGTCAGAAGAAAAAACTGCTCCAACA
ACCCTCGCTGCCTCTATGGCCTAGGAGAAGGCAAACAGGGCATATGGAGC
GCAAACCCAGGCCTCATCTTAGTCCTCGGGGAAGACATGTCGGGAGCGCT
CAAGATGGCACCCACAGCAAATTCTTCAATAGATTCGTCCAGCCCCGTAT
CCGAAGGGGGGGTGTTGGAGGAGGGCGCTAGCGCGTCCCCTACCCCGTCC
CGCCTCCCAGTGGGTCTAAAAAACCTGGGGGCAACGTGCTATCTGAATTC
CCAGCTCCAGGCGTTGTTCGCGAACAGGGAATTCCGGAGGGGAGTCTACG
CTTGGAGACCGTCCGGCATATGGAGCGCAAACCCAGGCCTCATCTTAGTC
CTCGGGGAAGACATGTCGGGAGCGCTCAAGATGGCACCCACAGCAAATTC
TTCAATAGATTCGTCCAGCCCCGTATCCGAAGGGGGGGTGTTGGAGGAGG
GCGCTAGCGCGTCCCCTACCCCGTCCCGCCTCCCAGTGGGTCTAAAAAAC
CTGGGGGCAACGTGCTATCTGAATTCCCAGCTCCAGGCGTTGTTCGCGAA
CAGGGAATTCCGGAGGGGAGTCTACGCTTGGAGACCGTCC
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