mRNA_S-dermatodea_contig13724.2144.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: D8LKX6_ECTSI (Similar to ubiquitin specific protease 48 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKX6_ECTSI) HSP 1 Score: 139 bits (349), Expect = 8.660e-36 Identity = 73/119 (61.34%), Postives = 85/119 (71.43%), Query Frame = 1
Query: 1 DHVRRKNCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTP----SRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRPS 345
DHVR+KNCSNNPRCLYGLGEGK+GIWS P LI LGEDMSG +K P+ S +++ + G G + P P R P GLKNLGATCYLNSQLQALFAN+ FR GV++WRPS
Sbjct: 14 DHVRKKNCSNNPRCLYGLGEGKEGIWSRKPALIAALGEDMSGMVKELPSE--STRAATAAAGGSSAGPGDAVVPFPPPRMQRQPTGLKNLGATCYLNSQLQALFANKAFRDGVFSWRPS 130
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: A0A5D6XMC9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XMC9_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 4.010e-18 Identity = 58/127 (45.67%), Postives = 71/127 (55.91%), Query Frame = 1
Query: 1 DHVRRK--------NCSNNPRCLYGLGEGKQGIWSANPGLIL-VLGEDMSGALKM----APTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRP 342
DH R+K NC+ NP CL+GLGE ++G+W A P L+ +LG+D L+ AP +S SSSP +E G S LP GL+NLGATCYLNS LQ LF N FR VY W P
Sbjct: 44 DHHRKKSKSAAALRNCAENPNCLFGLGEHQEGVW-AKPKLVQRLLGDDPREQLRAVYPDAPRRKNSA-SSSPAAESGA-----------SLLPCGLRNLGATCYLNSMLQTLFTNVAFREAVYRWEP 157
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: A0A024U320_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U320_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 4.770e-17 Identity = 48/110 (43.64%), Postives = 60/110 (54.55%), Query Frame = 1
Query: 13 RKNCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRP 342
R+NC +NP CL+GLGE GIW NP ++ LG D S L+ SPVSE E+ + P GL+NLGATCY+NS +Q LF FRR V+ W P
Sbjct: 67 RRNCQDNPNCLFGLGEYADGIWKTNPSVLADLGPDPSTMLR------------SPVSE----EDTNNNHDENGARPCGLRNLGATCYVNSMVQCLFMTMSFRRAVHEWEP 160
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: A0A3R7JRC3_9STRA (USP domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JRC3_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 4.770e-17 Identity = 49/122 (40.16%), Postives = 62/122 (50.82%), Query Frame = 1
Query: 1 DHVRRK--------NCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRP 342
DH R+K NC++NP CLYGLGE ++G+W AN + V G+D + G + G ++P GL+NLGATCYLNS LQ LF N FRR VY W P
Sbjct: 35 DHHRKKGKTVNVLRNCADNPNCLYGLGERQKGVWQANKLIRRVFGDDPRERRR------------------GFAKSGG-------KMPCGLRNLGATCYLNSMLQCLFVNLPFRRAVYEWEP 131
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: A0A3F2RYI8_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RYI8_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 6.490e-17 Identity = 49/122 (40.16%), Postives = 62/122 (50.82%), Query Frame = 1
Query: 1 DHVRRK--------NCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRP 342
DH R+K NC++NP CLYGLGE ++G+W AN + V G+D + G + G ++P GL+NLGATCYLNS LQ LF N FRR VY W P
Sbjct: 35 DHHRKKGKAANVLRNCADNPNCLYGLGERQKGVWQANKLIRRVFGDDPRERRR------------------GFAKSGG-------KMPCGLRNLGATCYLNSMLQCLFVNLPFRRAVYEWEP 131
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: A0A2D4BF54_PYTIN (Ubiquitin-specific protease, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF54_PYTIN) HSP 1 Score: 83.6 bits (205), Expect = 2.270e-16 Identity = 50/114 (43.86%), Postives = 59/114 (51.75%), Query Frame = 1
Query: 4 HVRRKNCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRPS 345
HV RKNC NP CL+GLGE +G+W L VLGED + ++ LE G P P GL+NLGATCYLNS LQ LF N FRR V+ W P+
Sbjct: 51 HV-RKNCEANPNCLFGLGEYSKGVWQGAKLLRRVLGEDPRDLQRSFSVSS--------------LENG---DDXPRLAPCGLRNLGATCYLNSMLQCLFVNVPFRRAVFEWEPT 146
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: A0A1V9ZY32_9STRA (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZY32_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 4.180e-16 Identity = 45/109 (41.28%), Postives = 56/109 (51.38%), Query Frame = 1
Query: 19 NCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRPS 345
NCS NP CLYGLGE +GIW + P L+ LGED S +++ S P GL+NLGATCY+NS +Q LF + FRR V+ W PS
Sbjct: 45 NCSENPNCLYGLGEYTEGIWKSVPELLKALGEDPSLSIRTEINQEKST-------------------------PCGLRNLGATCYVNSMVQVLFMDLAFRRAVHEWEPS 128
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: A0A6A3WD98_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WD98_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 7.910e-16 Identity = 51/122 (41.80%), Postives = 60/122 (49.18%), Query Frame = 1
Query: 1 DHVRRK--------NCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRP 342
DH RR+ NC++NP CLYGLGE ++G+W L+ V G D P A G + PT P GL+NLGATCYLNS LQ LF N FRR VY W P
Sbjct: 33 DHHRRRGKAASALRNCADNPNCLYGLGERQKGVWRRESLLLRVFGPD--------PRARR-------------RGSGRAGRPT----PCGLRNLGATCYLNSMLQCLFVNLPFRRAVYEWEP 129
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: A0A662X1Q3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X1Q3_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 8.000e-16 Identity = 50/123 (40.65%), Postives = 61/123 (49.59%), Query Frame = 1
Query: 1 DHVRRK---------NCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRP 342
DH R+K NC +NP CL+GLGE ++GIW + + V G+D + V+ GVL LP GL+NLGATCYLNS LQ LF N FRR VY W P
Sbjct: 383 DHHRKKSKAAAGVLRNCESNPNCLFGLGERQKGIWQSKQLIRRVFGDDPRERQRS-------------VARDGVL------------LPCGLRNLGATCYLNSMLQCLFVNLPFRRAVYEWEP 480
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Match: T0S3W8_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S3W8_SAPDV) HSP 1 Score: 81.6 bits (200), Expect = 1.060e-15 Identity = 43/109 (39.45%), Postives = 61/109 (55.96%), Query Frame = 1
Query: 19 NCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTANSSIDSSSPVSEGGVLEEGASASPTPSRLPVGLKNLGATCYLNSQLQALFANREFRRGVYAWRPS 345
NCS NP C++GLGE +GIW +P ++ LG++ S A++ V E+G S P GL+NLGATCY+NS +Q LF + FRR V+ W+P+
Sbjct: 51 NCSENPNCIFGLGEYMEGIWKTHPAVLDALGDNPSLAVRTR-----------------VTEDGPST-------PCGLRNLGATCYVNSMVQVLFMDLAFRRAVHEWKPN 135 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13724.2144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig13724.2144.1 >prot_S-dermatodea_contig13724.2144.1 ID=prot_S-dermatodea_contig13724.2144.1|Name=mRNA_S-dermatodea_contig13724.2144.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=115bp DHVRRKNCSNNPRCLYGLGEGKQGIWSANPGLILVLGEDMSGALKMAPTAback to top mRNA from alignment at S-dermatodea_contig13724:4279..4885- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig13724.2144.1 ID=mRNA_S-dermatodea_contig13724.2144.1|Name=mRNA_S-dermatodea_contig13724.2144.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=607bp|location=Sequence derived from alignment at S-dermatodea_contig13724:4279..4885- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig13724:4279..4885- >mRNA_S-dermatodea_contig13724.2144.1 ID=mRNA_S-dermatodea_contig13724.2144.1|Name=mRNA_S-dermatodea_contig13724.2144.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at S-dermatodea_contig13724:4279..4885- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |