mRNA_S-dermatodea_contig1371.2141.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1371.2141.1
Unique NamemRNA_S-dermatodea_contig1371.2141.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1371.2141.1 vs. uniprot
Match: D8LAV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAV0_ECTSI)

HSP 1 Score: 320 bits (819), Expect = 3.140e-105
Identity = 149/185 (80.54%), Postives = 169/185 (91.35%), Query Frame = 1 
Query:   76 GTKRNRFLTKTPENGDLNQYWYSQATIEAIAAEVAEFGPGGTAFLSTPSIFFSLEKDLRSKCKVFDLDTKWAEDPGFVLYDFTQPENIPQDLRGTFDMVVVDPPFITREVWERYTAATQMLLRPGGAGLVLCSTISENASFMKELLGVTACEFKPSIPNLVYQYSLFVNYDSERLRVSNPEIPSE 630
            G KRNRFL K PENGDLNQYWYS+ATI+AI AEV EFG GGTAFLSTPSI+FSL++DLR+KCKVFDLDTKWA+DPGFVLYD+T+P++IP+ LRGTFDMVVVDPPF+TR+VWE YTAAT++LLRPGGA LVLCSTI ENA FM+ELLG + CEFKPSIPNLVYQYSL+VNYDS+RL   NPEIPSE
Sbjct:    5 GGKRNRFLMKNPENGDLNQYWYSKATIDAIVAEVGEFGSGGTAFLSTPSIYFSLDRDLRAKCKVFDLDTKWAKDPGFVLYDYTKPQDIPETLRGTFDMVVVDPPFVTRQVWESYTAATKLLLRPGGARLVLCSTILENAPFMEELLGASPCEFKPSIPNLVYQYSLYVNYDSKRLASCNPEIPSE 189
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BLAST of mRNA_S-dermatodea_contig1371.2141.1 vs. uniprot
Match: A0A835YKM7_9STRA (Putative N6-adenine methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKM7_9STRA)

HSP 1 Score: 239 bits (610), Expect = 9.080e-74
Identity = 113/184 (61.41%), Postives = 137/184 (74.46%), Query Frame = 1 
Query:   85 RNRFLTKTPENGDLNQYWYSQATIEAIAAEVAEFGPGGTAFLSTPSIFFSLEKDLRSKCKVFDLDTKWAEDPGFVLYDFTQPENIPQDLRGTFDMVVVDPPFITREVWERYTAAT--QMLLRPGGAGLVLCSTISENASFMKELLGVTACEFKPSIPNLVYQYSLFVNYDSERLRVSNPEIPSE 630
            +NRFL + PE GDLNQYWYS+ TIEA+  EV EFG  GTAFLSTPSI+FS   ++R KCKVFD+DT W +DPGFV +DF + +++P DL GTF MVV+DPPFI REVWE Y  AT  ++LL+PGG   +L +TI+EN   M ELL V  C FKPSIP+LVYQY L+ NYDS  L   NPEIP +
Sbjct:    4 KNRFLVRNPEKGDLNQYWYSKGTIEALVLEVVEFGGEGTAFLSTPSIYFSTPAEIRQKCKVFDIDTAWKKDPGFVYFDFNKLDDVPADLHGTFAMVVIDPPFIMREVWEAYAMATAARLLLQPGGK--ILATTIAENEELMAELLDVKPCVFKPSIPHLVYQYKLYTNYDSPNLNQRNPEIPED 185
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BLAST of mRNA_S-dermatodea_contig1371.2141.1 vs. uniprot
Match: A0A7S1G4D1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G4D1_9STRA)

HSP 1 Score: 219 bits (557), Expect = 1.300e-65
Identity = 117/201 (58.21%), Postives = 137/201 (68.16%), Query Frame = 1 
Query:   73 AGTKRNRFLTKTPENGDLNQYWYSQATIEAIAAEVAEFGPGGTAFLSTPSIFFSLEKDLRSKCKVFDLDTKWAEDPGFVLYDFTQPENIPQDLRGTFDMVVVDPPFITREVWERYTAATQMLL--RPG----GAG-----------LVLCSTISENASFMKELLGVTACEFKPSIPNLVYQYSLFVNYDSERLRVSNPEIP 624
            A  KRNRFL +T E  DLNQYWYS  +I A+AAEV   G G   F+STPSI+FSL K+ R    VFDLDT+W +DPGFV YDF +PEN P++LR  FDM+VVDPPFITREVWE+Y    ++L   R G    GAG             L STI+ENA  M+ELLGV    FKPSIPNLVYQY+L+ NY+SE L V NPEIP
Sbjct:    5 AKVKRNRFLLRTKEKEDLNQYWYSAKSIAAMAAEVVATG-GKACFISTPSIYFSLTKEQREGNYVFDLDTQWEKDPGFVRYDFNEPENFPEELRHAFDMIVVDPPFITREVWEKYATTMRLLAKERSGEVDTGAGGEEEKKDEPPCRFLVSTIAENAEMMEELLGVKPQAFKPSIPNLVYQYNLYANYESEGLSVPNPEIP 204
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BLAST of mRNA_S-dermatodea_contig1371.2141.1 vs. uniprot
Match: A0A7S0SHX0_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SHX0_9CHLO)

HSP 1 Score: 218 bits (556), Expect = 2.750e-64
Identity = 108/188 (57.45%), Postives = 138/188 (73.40%), Query Frame = 1 
Query:   82 KRNRFLTKTPENGDLNQYWYSQATIEAIAAEVAEF-GPGGT--AFLSTPSIFFSLEKDLRSKCKVFDLDTKWAEDPGFVLYDFTQPENIP--QDLRGTFDMVVVDPPFITREVWERYTAATQMLLRPGGAGLVLCSTISENASFMKELLGVTACEFKPSIPNLVYQYSLFVNYDSERLRVSNPEIPSE 630
            K+NRFL+ T E  DLNQYWYS  TI  +A +V E     GT  AFLSTPS++FSL K++R++   FDLDT+W ++PG+V Y+F  P + P   +LRGTFDMV++DPPFITREVWE+Y    + LLRPGG G V+ STI ENA FM+ELLGV    F+PSIP LVYQY+L+ +Y+S+ L V NPEIP +
Sbjct:  103 KKNRFLSTTREVEDLNQYWYSNRTITHMALDVEEVCAAEGTRAAFLSTPSVYFSLSKEVRARSWCFDLDTQWHKEPGYVCYNFQTPVDFPGAAELRGTFDMVIIDPPFITREVWEKYAETARFLLRPGGGGHVMASTIQENAPFMRELLGVEPQVFQPSIPTLVYQYALYASYESKNLGVKNPEIPDD 290
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BLAST of mRNA_S-dermatodea_contig1371.2141.1 vs. uniprot
Match: C1MQ67_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MQ67_MICPC)

HSP 1 Score: 214 bits (544), Expect = 1.130e-63
Identity = 110/186 (59.14%), Postives = 133/186 (71.51%), Query Frame = 1 
Query:   82 KRNRFLTKTPENGDLNQYWYSQATIEAIAAEVAE--FGPGGTA-FLSTPSIFFSLEKDLRSKCKVFDLDTKWAEDPGFVLYDFTQPENIP--QDLRGTFDMVVVDPPFITREVWERYTAATQMLLRPGGAGLVLCSTISENASFMKELLGVTACEFKPSIPNLVYQYSLFVNYDSERLRVSNPEIP 624
            K+NRFL+ T E  DLNQYWYS  TI A+A++V +    P   A FLSTPS++FSL KD R++   FDLDT+WA +PGFV YDF  P       DL+GTFDMV++DPPFITREVWE+YT   + LL+PGG   VL STI ENA F+KELLGVT   F PSIP LVYQY L+ +Y+S+ L   NPEIP
Sbjct:   19 KKNRFLSTTKEVEDLNQYWYSNRTIAAMASDVEDQCSSPDSKACFLSTPSVYFSLNKDTRARSWCFDLDTQWAREPGFVKYDFNDPIGFDGFDDLKGTFDMVIIDPPFITREVWEKYTTTAKALLKPGGK--VLASTIQENAPFVKELLGVTPQVFMPSIPTLVYQYHLYASYESKFLAEKNPEIP 202
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BLAST of mRNA_S-dermatodea_contig1371.2141.1 vs. uniprot
Match: A0A8J8NP72_HALGN (Uncharacterized protein n=2 Tax=Halteria grandinella TaxID=5974 RepID=A0A8J8NP72_HALGN)

HSP 1 Score: 211 bits (537), Expect = 6.510e-63
Identity = 106/180 (58.89%), Postives = 131/180 (72.78%), Query Frame = 1 
Query:   88 NRFLTKTPENGDLNQYWYSQATIEAIAAEVAEFGPGGTAFLSTPSIFFSLE-KDLRSKCKVFDLDTKWAEDPGFVLYDFTQPENIPQDLRGTFDMVVVDPPFITREVWERYTAATQMLLRPGGAGLVLCSTISENASFMKELLGVTACEFKPSIPNLVYQYSLFVNYDSERLRVSNPEIP 624
            N FL K  E  D NQYWYS+ATI  +A+E  +FG    AFLSTPSI+FSL+ K++++  +VFD DTK+ +DPGFV YDF +PE+IP DL   FDMVV+DPPFITREVWE+Y  A +++L   G G +L STI EN  F+ ELLG     F+PSIPNLVYQYSL+ NY+SE L   NPEIP
Sbjct:    5 NPFLAKHKEKSDFNQYWYSKATINFMASECEQFGQK-IAFLSTPSIYFSLKNKEIKAASRVFDFDTKFNKDPGFVFYDFNKPEDIPADLHNYFDMVVIDPPFITREVWEKYATAAKLILIKEG-GKILLSTIDENEGFIDELLGAKRRAFRPSIPNLVYQYSLYSNYESEGLLAKNPEIP 182
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BLAST of mRNA_S-dermatodea_contig1371.2141.1 vs. uniprot
Match: J9IRF9_9SPIT (N6-adenineMlase domain containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IRF9_9SPIT)

HSP 1 Score: 211 bits (536), Expect = 8.880e-63
Identity = 104/180 (57.78%), Postives = 132/180 (73.33%), Query Frame = 1 
Query:   88 NRFLTKTPENGDLNQYWYSQATIEAIAAEVAEFGPGGTAFLSTPSIFFSLE-KDLRSKCKVFDLDTKWAEDPGFVLYDFTQPENIPQDLRGTFDMVVVDPPFITREVWERYTAATQMLLRPGGAGLVLCSTISENASFMKELLGVTACEFKPSIPNLVYQYSLFVNYDSERLRVSNPEIP 624
            N FL K  EN DLNQYWYS+ TI  +A+E  +FG    AFLSTPS++FSL+ K++++  K FD D K+ +DP F+ YDF +PE+IP++L   FDMVV+DPPFITREVWE+YT A++ LL   G   +L STI EN +F+ ELLG    +F+PSIPNLVYQYSL+ NYDSE L   NPEIP
Sbjct:    5 NPFLAKNKENADLNQYWYSKPTINFLASECEQFGKK-IAFLSTPSVYFSLKNKEIKANSKCFDYDEKFGKDPNFIFYDFNKPEDIPRELEKQFDMVVIDPPFITREVWEKYTEASKFLLADDGK--ILLSTIDENEAFILELLGAKRRQFRPSIPNLVYQYSLYSNYDSEGLNNKNPEIP 181
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BLAST of mRNA_S-dermatodea_contig1371.2141.1 vs. uniprot
Match: C1FFV8_MICCC (Uncharacterized protein n=2 Tax=Eukaryota TaxID=2759 RepID=C1FFV8_MICCC)

HSP 1 Score: 210 bits (534), Expect = 3.480e-62
Identity = 104/186 (55.91%), Postives = 135/186 (72.58%), Query Frame = 1 
Query:   82 KRNRFLTKTPENGDLNQYWYSQATIEAIAAEVAEFGPGG---TAFLSTPSIFFSLEKDLRSKCKVFDLDTKWAEDPGFVLYDFTQPENIP--QDLRGTFDMVVVDPPFITREVWERYTAATQMLLRPGGAGLVLCSTISENASFMKELLGVTACEFKPSIPNLVYQYSLFVNYDSERLRVSNPEIP 624
            K+NRFL+ T E  DLNQYWYS  TI A+A +V +         AFLSTPS++FSL K++R++   FDLDT+W ++PG+V YDF +P +    ++L+GTFDMV++DPPFITREVWE+YT   + LL+PGG   V+ STI ENA FMKELLGV    F PSIP LVYQY L+ +Y+S+ L+  NPEIP
Sbjct:   19 KKNRFLSTTKEVEDLNQYWYSNRTISAMARDVEDVCAAPETRAAFLSTPSVYFSLSKEVRARSWCFDLDTQWQKEPGYVCYDFNKPIDFEGAEELKGTFDMVIIDPPFITREVWEKYTETARWLLKPGGH--VMASTIQENAPFMKELLGVDPQVFMPSIPTLVYQYYLYASYESKHLKDKNPEIP 202
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BLAST of mRNA_S-dermatodea_contig1371.2141.1 vs. uniprot
Match: A0A7S1IZX2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IZX2_9EUGL)

HSP 1 Score: 207 bits (527), Expect = 3.720e-61
Identity = 105/190 (55.26%), Postives = 129/190 (67.89%), Query Frame = 1 
Query:   64 RTMAGTKRNRFLTKTPENGDLNQYWYSQATIEAIAAEVAEFGPGGTAFLSTPSIFFSLEKD-LRSKCKVFDLDTKWAEDPGFVLYDFTQPENIPQDLRGTFDMVVVDPPFITREVWERYTAATQMLLRPGGAGLVLCSTISENASFMKELLGVTACEFKPSIPNLVYQYSLFVNYDSERLRVSNPEIPSE 630
            RTM+  K+NRFL + PE  + NQYWYS +TI  I AEV   G    AF+STPS++FSL+   L+   KV D D KW +D GFV Y+F +P N+P DL   FD +VVDPPFIT EVW +Y    + LL+PGG  +VLCSTI+ENAS MKE+LG+    FKPSIPNLVYQY L+ NY    L   NPEIP +
Sbjct:   18 RTMS-EKKNRFLLRNPEKAEHNQYWYSDSTIRNIIAEVEASGATKAAFVSTPSLYFSLQSAALKQTSKVLDFDKKWEKDLGFVFYNFEEPTNLPADLEHQFDYIVVDPPFITAEVWAQYATTVKFLLKPGG--MVLCSTIAENASMMKEILGLEPIAFKPSIPNLVYQYLLYSNYPVTVLGSPNPEIPED 204
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BLAST of mRNA_S-dermatodea_contig1371.2141.1 vs. uniprot
Match: A0A250WRC4_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WRC4_9CHLO)

HSP 1 Score: 205 bits (522), Expect = 1.190e-60
Identity = 102/189 (53.97%), Postives = 127/189 (67.20%), Query Frame = 1 
Query:   70 MAGTKRNRFLTKTPENGDLNQYWYSQATIEAIAAEVAEFGPGGTAFLSTPSIFFSLEKD--LRSKCKVFDLDTKWAEDPGFVLYDFTQPENIPQDLRGTFDMVVVDPPFITREVWERYTAATQMLLRPGGAGLVLCSTISENASFMKELLGVTACEFKPSIPNLVYQYSLFVNYDSERLRVSNPEIPSE 630
            MA T +NRFL KT EN  LNQYWYS ATIEA+  E+        AFLSTPS++FSL KD  ++    VFD D +W  DP F  YDF +PE++P +L   FDMVV+DPPFITREVWE+YT A ++LL+    G V+ ST++EN   + ELLG   C FKPSIP+L+YQY+ F NY    L   NPEIP +
Sbjct:    1 MADTSKNRFLIKTSENELLNQYWYSAATIEALVQEILS-SASRVAFLSTPSVYFSLPKDSEVKKSSWVFDFDEQWRTDPHFCKYDFNKPEDLPGNLLNDFDMVVIDPPFITREVWEKYTKAAKLLLK--NEGKVIASTVAENDGLLSELLGSKPCNFKPSIPHLIYQYNFFTNYKPTALAEKNPEIPED 186
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1371.2141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LAV0_ECTSI3.140e-10580.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YKM7_9STRA9.080e-7461.41Putative N6-adenine methyltransferase-domain-conta... [more]
A0A7S1G4D1_9STRA1.300e-6558.21Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S0SHX0_9CHLO2.750e-6457.45Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
C1MQ67_MICPC1.130e-6359.14Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A8J8NP72_HALGN6.510e-6358.89Uncharacterized protein n=2 Tax=Halteria grandinel... [more]
J9IRF9_9SPIT8.880e-6357.78N6-adenineMlase domain containing protein n=1 Tax=... [more]
C1FFV8_MICCC3.480e-6255.91Uncharacterized protein n=2 Tax=Eukaryota TaxID=27... [more]
A0A7S1IZX2_9EUGL3.720e-6155.26Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A250WRC4_9CHLO1.190e-6053.97Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1371contigS-dermatodea_contig1371:15462..19470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score322.8
Seed ortholog evalue1.1e-85
Seed eggNOG ortholog2880.D8LAV0
Preferred nameEFM5
KEGG koko:K03953,ko:K12382,ko:K16546
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04142,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04142,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009987,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019538,GO:0032259,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG3350@1,KOG3350@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Exons5
Model size1400
Cds size567
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924294.7106593-UTR-S-dermatodea_contig1371:15461..162251622924294.7106593-UTR-S-dermatodea_contig1371:15461..16225Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1371 15462..16225 -
1694079157.8169432-UTR-S-dermatodea_contig1371:15461..162251694079157.8169432-UTR-S-dermatodea_contig1371:15461..16225Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1371 15462..16225 -
1622924294.7809286-UTR-S-dermatodea_contig1371:19401..194701622924294.7809286-UTR-S-dermatodea_contig1371:19401..19470Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1371 19402..19470 -
1694079157.87924-UTR-S-dermatodea_contig1371:19401..194701694079157.87924-UTR-S-dermatodea_contig1371:19401..19470Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1371 19402..19470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924294.7198002-CDS-S-dermatodea_contig1371:16225..164591622924294.7198002-CDS-S-dermatodea_contig1371:16225..16459Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1371 16226..16459 -
1694079157.8277798-CDS-S-dermatodea_contig1371:16225..164591694079157.8277798-CDS-S-dermatodea_contig1371:16225..16459Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1371 16226..16459 -
1622924294.729383-CDS-S-dermatodea_contig1371:17312..174411622924294.729383-CDS-S-dermatodea_contig1371:17312..17441Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1371 17313..17441 -
1694079157.8354442-CDS-S-dermatodea_contig1371:17312..174411694079157.8354442-CDS-S-dermatodea_contig1371:17312..17441Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1371 17313..17441 -
1622924294.7482817-CDS-S-dermatodea_contig1371:18093..181971622924294.7482817-CDS-S-dermatodea_contig1371:18093..18197Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1371 18094..18197 -
1694079157.8428717-CDS-S-dermatodea_contig1371:18093..181971694079157.8428717-CDS-S-dermatodea_contig1371:18093..18197Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1371 18094..18197 -
1622924294.7620265-CDS-S-dermatodea_contig1371:18875..189301622924294.7620265-CDS-S-dermatodea_contig1371:18875..18930Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1371 18876..18930 -
1694079157.8543198-CDS-S-dermatodea_contig1371:18875..189301694079157.8543198-CDS-S-dermatodea_contig1371:18875..18930Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1371 18876..18930 -
1622924294.772068-CDS-S-dermatodea_contig1371:19356..194011622924294.772068-CDS-S-dermatodea_contig1371:19356..19401Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1371 19357..19401 -
1694079157.8688567-CDS-S-dermatodea_contig1371:19356..194011694079157.8688567-CDS-S-dermatodea_contig1371:19356..19401Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1371 19357..19401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1371.2141.1prot_S-dermatodea_contig1371.2141.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1371 16226..19401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1371.2141.1

>prot_S-dermatodea_contig1371.2141.1 ID=prot_S-dermatodea_contig1371.2141.1|Name=mRNA_S-dermatodea_contig1371.2141.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=189bp
MAGTKRNRFLTKTPENGDLNQYWYSQATIEAIAAEVAEFGPGGTAFLSTP
SIFFSLEKDLRSKCKVFDLDTKWAEDPGFVLYDFTQPENIPQDLRGTFDM
VVVDPPFITREVWERYTAATQMLLRPGGAGLVLCSTISENASFMKELLGV
TACEFKPSIPNLVYQYSLFVNYDSERLRVSNPEIPSEV*
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mRNA from alignment at S-dermatodea_contig1371:15462..19470-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1371.2141.1 ID=mRNA_S-dermatodea_contig1371.2141.1|Name=mRNA_S-dermatodea_contig1371.2141.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4009bp|location=Sequence derived from alignment at S-dermatodea_contig1371:15462..19470- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTGCAATGCACAGCAGAGACACAGAACTGATCTGTATCACAGCGTAGCA
GCGGCTTGTTGGGAGGACTATGGCAGGTACCAAGCGCAACAGGTTCCTCA
CAAAGACTCCGGAGGTCAGGAAAGCTTGCAGACGGTCGATCGGCGCCTCT
GGCAGTTAGCTTATACATCATCTTTACTGCAATATTTATATTCCCCTAAT
AAAAGAGGAGCAAGATCTCCAGGGCAGGAGGATTCGCTTCGGTCATTGTA
TGATGGCAGCAGCTGCAGAGAGCCTGCCACGACATAGACGAAGCTGGCCA
GCGAGCGGTTTTGGAAAAGAGGCTGCGCGCGGGAGGCTTGCATATGCCGG
ACCCTCCCAAAGCCGCCATGGCTGAGCTTCAACTGCCCCTCCAATCCAGC
GTGACTTTGACGACATACAATTGTAAGTACTACTTGTACAAAATATCCGA
ACGTACGTTTCTCCAACGAGCACCCATCACCCCCCACTCTCGTGGCGCCC
TACTCGTATTCCCCACCATCCTATCTTCCTCGCCAATCAGAACGGGGATC
TCAACCAGTACTGGTACTCACAGGCGACCATCGAAGCCATAGCAGGTGCG
TTTGGCCTTTCGGAATTGATACACAGGGAGTACACGTGGAGAGGAAAGTA
TGTGAACATGTACACCGTCCGGTACAAGTATGTATCTCAGATCTAAGCAT
ATACGAAGTATTACCACTACAAAAGTTATACTCGAAGTATTTATACTACT
GCTCTTGCAGCTCTATAATACGTGTCACAGGTCTATTTGTTGAATACGCT
CCGTTGAGATGCGGCAGACACCAGACGGTGTCAGGCCAAGACGAACCGCG
ACATCCATCGCTTAGGCAATCGCCTGCGTGCATGAAATCCCGAAAACCAA
AGCTTGTGTTACCGTTGCGAGGATTCTCGAAGCCCCACGATGACCGTAGA
CTCGCCGCGCATTGGACACAGGCAAAAAAGAGGACAAGTATGATACAGCC
GCCCGCTCTCTGCCCGCATTTTTCATTTTTCGAAGCGTGTGCGACACCAT
TGCCGCCAGTCCGAGCGTATTCCGCCCCACGTTTCACCCTACGTATACAC
GTCAGAATGAGATGATCACCTGGGTACTACTGCCTTTTGCAGCCGTCTGG
GGTATGGAGGTATTTGCCCTAATTTTGAGCTTTTCGATTTATAACTCGGC
CATCACGACTGAAAAAAAAAAACGGAAACCGCGCCATGTGAATGTTCGTT
TCTTTTGCTCTCCGCGCCAACAGCGGAGGTGGCTGAATTCGGGCCCGGCG
GCACCGCGTTTCTTTCCACGCCCAGCATTTTCTTCTCCTTGGAGAAGGAC
CTGCGGTCGAAGTGCAAGGTGTTCGATGTGAGGAGGCAGTGCGAGTTAAT
AACTTATTATGGTTGTTGGTTCGATATTCACGGGTTACACCACTCTCTGT
AGCATTGCAGCATTACTGCAGCATTGGCGAGGCGACCATGGCGGTCGGTC
GTGGGCGCGGGGGGGGGGGGGGTCGCGCCTTTGGAAAAATACCTATATTT
AATATTGTATATAGGTATTTTTCCAAAGGCTCGAGCCGTGTTTCGTTCAT
GGAGCACAGCCTGTCTTTGAGCGCGCCCGATGCCATTTGATGTAGCAGCA
GACGCGTGGCCCTGGTTGTTTTGTATTGCGTTTGCCAGCCGCGCCACTTC
GATTGGGTTTAACCTTCCTCGCAAGGACAGCGACGAAGACAGGGAAGGAA
ACAAAAAAAACAACAAACTGAATCGTGATCGATTATTGATTGTAACGACG
GGGTTACGACGCAACACGCGGCAAGTCCTCCGTACTAAGGAACGTTTTAC
CAACCGAAGTCCTCAGCGCAGATCGCGGTTAATTTAATAAAAACAAAATT
TGAGGTTTACTCCGCGAGCGTCAGTTGCTTGAAAGGATTACACTCATGAA
ACGCGGGGGGGGCAAATTTTCATGCGTGCATACATCCATTCCTCCGTTTG
TCGATCGCGCCCGCCCCCCGTGCCCGCAGCTAGACACCAAGTGGGCGGAG
GACCCCGGGTTCGTCCTCTACGACTTCACGCAGCCGGAAAATATCCCGCA
AGACTTGCGGGGCACGTTTGACATGGTCGTTGTTGACCCTCCCTTCATCA
CGAGAGAGGTGGGTTATCGTTCTTATGTATTACTGAGTATAATATTTAGT
ATGATATCTGGCAGTGTCCCCCTCGAAGATTAGGTTGGATTTAACGTAGG
AGCGGCAGATAAGCGCCTGGAATGACTTGTCCCTTCTATTGTATGCGTAC
TCATAGCGGTTCGCTGTGTCAATGTAAGAACCCCCCGATCGCGTCTTGTA
AGTTGAGACGTTGAGACCATCACAGCAGGAGTCGCTCTCCCTCCCCTCAT
CCGTAAAGTAAAGGGAGGTGCGCTTGATGGCATGCAGGGACGCTCTCTGG
ACCTGCCGTTTCGTGTGTGTGTGTGTGCGAACCGATCGGGCGTCATGATT
GTGGCTCTCTCTCTTTCTATCTGTGCGCCCGGTCCTGGAATGCGTCTGTC
CCTTCGAGCCAGGCACACTAGCAACACAATAGCTTATCCTGTGTGCACCT
CTCGTCCTACAATAAATACATTAGTTCACTATTAATATTGTGTAGATGCA
TTAACGTCTTGTTTGAATGCGTTCTCTGTTGTTCTACATTCTGCAATACA
AGAGTAAACAGGTGTTTAGGAGAACGATACCATGGTACATACATTACACA
TTGCCAACTTGCTCCTATCTACAGAGGGCGTTATTTTTGAGCTAGGGAGG
CCGTGCCCCCCAGTAACCGCAGTACCCCCCCCCCCCCCTCCCCCAACCCC
CACCGAAAGAAACTCAGCAGCACGTTTACACAAACGTGTTTTGTTATAAA
ATGAATTACATACGTATGATACCCAACTCCATCACAACGACAGACCTACA
GCACCCCAACGTAACCTCGCAACGCTCTCGTGCCGAATATTGCCCTGCCG
ACGCCATCAAGGTATGGGAACGATACACGGCAGCAACACAAATGCTGCTT
CGACCGGGGGGCGCCGGGCTCGTGCTGTGCAGCACCATATCAGAGAACGC
CTCCTTCATGAAGGAGCTCCTAGGGGTGACCGCGTGCGAGTTCAAGCCTT
CGATACCAAACCTCGTCTACCAGTACTCACTCTTCGTAAACTACGACTCC
GAAAGGCTTCGGGTTTCCAACCCAGAGATTCCGTCGGAAGTTTGATATGA
CGTTGCAAGGTGTAGCATGGTGTAACGCTTCTTCTTCTATCAAGTACTCA
CAAACATTTAAACAGTTTTGTATGAAAGCACTCACAGGCAGAATGTGTGC
AAAGTGTGGTTTTACGTATTGTGTGTTGTGTTTTTTTTCTTCTTTTGTTT
TTTCTTGTTTCGTGGGCGATGTGTTTACTTTGTTTTTGCGGTTTGTGTCG
TCAACCGAGCGATCATTTCTCTACCCGCCATGCGCGTTACGCGTAAATCG
TGGCCATGTGCCGTAAAAGTATGATCTAGGCGAGCAGCGCCTCTTGCAAT
GCTCAACAGTACGCCAGATATTGAAGACTGCGGGGACAGGAGTCTAGAGC
AGGCGAGGAAACGTTTTAGACACAAGAAGGGTTGTGGATGTGCAGTGAGC
TTGTCCTGTTCGGAAGGATGGCGGTGAGAGGAGAGGTCGTGGTTTGTTCT
CGAACCGTTTCTTACTACATTTTGTTATCATAGCGTAGTACAAGCAAAGC
TAAAGATTCGTTTTGGTATCATACACATATTTATAAAAAACAAAATCTAG
TTCCCATGTACATCCCTAACTCACAAGCACACTGGTTCAGGGGAATCATA
CACATATAACAAGCTTACACGATCGCTTGGGGGCACCGCCTCAGCAGAGA
CGATGCGATCGTGCGCGTTTGCACCTGAAAGTGGTGATTTTTTCTTGACG
ATACACGTACATATGTAATGAAGCCTGATGGACCCGTGCCATATGAGTAA
ACATTCCCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1371:15462..19470-

>mRNA_S-dermatodea_contig1371.2141.1 ID=mRNA_S-dermatodea_contig1371.2141.1|Name=mRNA_S-dermatodea_contig1371.2141.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1134bp|location=Sequence derived from alignment at S-dermatodea_contig1371:15462..19470- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGGTACCAAGCGCAACAGGTTCCTCACAAAGACTCCGGAGATGGC
AGGTACCAAGCGCAACAGGTTCCTCACAAAGACTCCGGAGAACGGGGATC
TCAACCAGTACTGGTACTCACAGGCGACCATCGAAGCCATAGCAGAACGG
GGATCTCAACCAGTACTGGTACTCACAGGCGACCATCGAAGCCATAGCAG
CGGAGGTGGCTGAATTCGGGCCCGGCGGCACCGCGTTTCTTTCCACGCCC
AGCATTTTCTTCTCCTTGGAGAAGGACCTGCGGTCGAAGTGCAAGGTGTT
CGATCGGAGGTGGCTGAATTCGGGCCCGGCGGCACCGCGTTTCTTTCCAC
GCCCAGCATTTTCTTCTCCTTGGAGAAGGACCTGCGGTCGAAGTGCAAGG
TGTTCGATCTAGACACCAAGTGGGCGGAGGACCCCGGGTTCGTCCTCTAC
GACTTCACGCAGCCGGAAAATATCCCGCAAGACTTGCGGGGCACGTTTGA
CATGGTCGTTGTTGACCCTCCCTTCATCACGAGAGAGCTAGACACCAAGT
GGGCGGAGGACCCCGGGTTCGTCCTCTACGACTTCACGCAGCCGGAAAAT
ATCCCGCAAGACTTGCGGGGCACGTTTGACATGGTCGTTGTTGACCCTCC
CTTCATCACGAGAGAGGTATGGGAACGATACACGGCAGCAACACAAATGC
TGCTTCGACCGGGGGGCGCCGGGCTCGTGCTGTGCAGCACCATATCAGAG
AACGCCTCCTTCATGAAGGAGCTCCTAGGGGTGACCGCGTGCGAGTTCAA
GCCTTCGATACCAAACCTCGTCTACCAGTACTCACTCTTCGTAAACTACG
ACTCCGAAAGGCTTCGGGTTTCCAACCCAGAGATTCCGTCGGAAGTTTGA
GTATGGGAACGATACACGGCAGCAACACAAATGCTGCTTCGACCGGGGGG
CGCCGGGCTCGTGCTGTGCAGCACCATATCAGAGAACGCCTCCTTCATGA
AGGAGCTCCTAGGGGTGACCGCGTGCGAGTTCAAGCCTTCGATACCAAAC
CTCGTCTACCAGTACTCACTCTTCGTAAACTACGACTCCGAAAGGCTTCG
GGTTTCCAACCCAGAGATTCCGTCGGAAGTTTGA
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