mRNA_S-dermatodea_contig13689.2130.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13689.2130.1
Unique NamemRNA_S-dermatodea_contig13689.2130.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13689.2130.1 vs. uniprot
Match: A0A6H5L2R7_9PHAE (PRA-CH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2R7_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.220e-20
Identity = 44/48 (91.67%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    7 RRNCWEAERGLGHLERTLAKRKEEAPEGSYTKRLFEDPVLLRNKLVEE 150
            RRNCWE ERGLGHLER L KRKE+APEGSYTKRLFEDPVLLRNKLVEE
Sbjct:  316 RRNCWEEERGLGHLERMLVKRKEQAPEGSYTKRLFEDPVLLRNKLVEE 363
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BLAST of mRNA_S-dermatodea_contig13689.2130.1 vs. uniprot
Match: A0A7S3YIB2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YIB2_HETAK)

HSP 1 Score: 74.7 bits (182), Expect = 1.530e-15
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 LGRRNCWEAERGLGHLERTLAKRKEEAPEGSYTKRLFEDPVLLRNKLVEE 150
            L RR+CW  +RGLG LERTLA R   AP GSYTKRLF+DP LLRNKL+EE
Sbjct:   27 LNRRDCWTGDRGLGKLERTLAARLRSAPAGSYTKRLFDDPALLRNKLLEE 76
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BLAST of mRNA_S-dermatodea_contig13689.2130.1 vs. uniprot
Match: A0A7S2V4U4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4U4_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.870e-14
Identity = 36/51 (70.59%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 LGRRNCWEAERGLGHLERTLAKRKEEAPEGSYTKRLFEDPVLLRNKLVEEV 153
            L RR CW+A RG+G LERTL +R   AP GSYTKRLF+DP LLRNKL+EEV
Sbjct:  316 LNRRTCWDAGRGIGKLERTLTQRLANAPAGSYTKRLFDDPALLRNKLLEEV 366
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BLAST of mRNA_S-dermatodea_contig13689.2130.1 vs. uniprot
Match: K3X3I1_GLOUD (PRA-CH domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3I1_GLOUD)

HSP 1 Score: 70.1 bits (170), Expect = 1.130e-12
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 LGRRNCWEAERGLGHLERTLAKRKEEAPEGSYTKRLFEDPVLLRNKLVEE 150
            L  R CW   RGL HL++ L  R ++APEGSYTKRLF DPVLLRNKLVEE
Sbjct:  356 LNTRTCWGEARGLQHLQQMLVSRLQDAPEGSYTKRLFNDPVLLRNKLVEE 405
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BLAST of mRNA_S-dermatodea_contig13689.2130.1 vs. uniprot
Match: A0A7S2P2N6_9STRA (Phosphoribosyl-ATP diphosphatase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P2N6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.140e-12
Identity = 32/45 (71.11%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   16 CWEAERGLGHLERTLAKRKEEAPEGSYTKRLFEDPVLLRNKLVEE 150
            CW   RG+ HLE TLA+R + APEGSYTKRLF+D  LLRNKLVEE
Sbjct:   26 CWGKPRGMRHLEETLAQRLKNAPEGSYTKRLFDDEELLRNKLVEE 70
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BLAST of mRNA_S-dermatodea_contig13689.2130.1 vs. uniprot
Match: A0A7S1Z924_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z924_TRICV)

HSP 1 Score: 67.0 bits (162), Expect = 6.310e-12
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   16 CWEAERGLGHLERTLAKRKEEAPEGSYTKRLFEDPVLLRNKLVEEVG----ATER 168
            CW   RGL HLE TLA R ++APEGSYTKRLF+D  LLR+KLVEE      ATER
Sbjct:  133 CWGRPRGLRHLEETLADRLKDAPEGSYTKRLFDDDALLRDKLVEEAQELSEATER 187
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BLAST of mRNA_S-dermatodea_contig13689.2130.1 vs. uniprot
Match: A0A5D6Y3P3_9STRA (PRA-CH domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3P3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.000e-11
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 LGRRNCWEAERGLGHLERTLAKRKEEAPEGSYTKRLFEDPVLLRNKLVEE 150
            L  R CW    G+ HL+  LA R +EAPEGSYTKRLF DPVLLRNKLVEE
Sbjct:  317 LDTRTCWGPVGGVQHLQSMLASRLQEAPEGSYTKRLFRDPVLLRNKLVEE 366
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BLAST of mRNA_S-dermatodea_contig13689.2130.1 vs. uniprot
Match: A0A4D9D8I2_9STRA (PRA-CH domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8I2_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.580e-11
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 LGRRNCWEAERGLGHLERTLAKRKEEAPEGSYTKRLFEDPVLLRNKLVEE 150
            L RR+CW+ +RGLG L+RTL  R  +A EGSYT++LF DP LLR+KLVEE
Sbjct:  330 LNRRSCWQEDRGLGALQRTLEDRLHQAVEGSYTQKLFRDPDLLRHKLVEE 379
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BLAST of mRNA_S-dermatodea_contig13689.2130.1 vs. uniprot
Match: A0A7S2RTE9_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RTE9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.670e-11
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 LGRRNCWEAERGLGHLERTLAKRKEEAPEGSYTKRLFEDPVLLRNKLVEE 150
            LG R CW    GL HL +TL  RK  APEGSYTKRLF+D  LLRNKL+EE
Sbjct:  270 LGTRTCWGNSGGLPHLFQTLQSRKANAPEGSYTKRLFDDKALLRNKLLEE 319
[Close]
BLAST of mRNA_S-dermatodea_contig13689.2130.1 vs. uniprot
Match: A0A2R5GVC6_9STRA (Histidine biosynthesis trifunctional protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVC6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.870e-11
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   10 RNCWEAERGLGHLERTLAKRKEEAPEGSYTKRLFEDPVLLRNKLVEE 150
            R CW  + G+ HL RTL  RK+ APEGSYTKRLF+D  LLRNKL+EE
Sbjct:  654 RTCWGYDGGIPHLFRTLESRKQNAPEGSYTKRLFDDRALLRNKLIEE 700
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13689.2130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2R7_9PHAE2.220e-2091.67PRA-CH domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S3YIB2_HETAK1.530e-1572.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V4U4_9STRA1.870e-1470.59Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3X3I1_GLOUD1.130e-1268.00PRA-CH domain-containing protein n=1 Tax=Globispor... [more]
A0A7S2P2N6_9STRA2.140e-1271.11Phosphoribosyl-ATP diphosphatase n=1 Tax=Leptocyli... [more]
A0A7S1Z924_TRICV6.310e-1265.45Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A5D6Y3P3_9STRA1.000e-1168.00PRA-CH domain-containing protein n=1 Tax=Pythium b... [more]
A0A4D9D8I2_9STRA2.580e-1164.00PRA-CH domain-containing protein n=1 Tax=Nannochlo... [more]
A0A7S2RTE9_9STRA4.670e-1166.00Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2R5GVC6_9STRA4.870e-1165.96Histidine biosynthesis trifunctional protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13689contigS-dermatodea_contig13689:660..1873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue4.4e-11
Seed eggNOG ortholog65071.PYU1_T011780
Preferred nameHIS4
KEGG rclassRC00002,RC00099,RC00242,RC00463,RC01055
KEGG koko:K11755,ko:K14152
KEGG ReactionR01158,R01163,R03012,R04035,R04037
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
GOsGO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0004635,GO:0004636,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009987,GO:0016053,GO:0016462,GO:0016491,GO:0016614,GO:0016616,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0030145,GO:0034641,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.Histidine biosynthesis trifunctional protein. Source PGD
EggNOG OGs1MDBV@121069,COG0139@1,KOG4311@2759
EC1.1.1.23,3.5.4.19,3.6.1.31
COG Functional cat.E
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size168
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924294.0871468-CDS-S-dermatodea_contig13689:659..7551622924294.0871468-CDS-S-dermatodea_contig13689:659..755Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13689 660..755 -
1694079157.379618-CDS-S-dermatodea_contig13689:659..7551694079157.379618-CDS-S-dermatodea_contig13689:659..755Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13689 660..755 -
1622924294.0968564-CDS-S-dermatodea_contig13689:1801..18731622924294.0968564-CDS-S-dermatodea_contig13689:1801..1873Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13689 1802..1873 -
1694079157.3980722-CDS-S-dermatodea_contig13689:1801..18731694079157.3980722-CDS-S-dermatodea_contig13689:1801..1873Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13689 1802..1873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13689.2130.1prot_S-dermatodea_contig13689.2130.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13689 660..1873 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13689.2130.1

>prot_S-dermatodea_contig13689.2130.1 ID=prot_S-dermatodea_contig13689.2130.1|Name=mRNA_S-dermatodea_contig13689.2130.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=56bp
LGRRNCWEAERGLGHLERTLAKRKEEAPEGSYTKRLFEDPVLLRNKLVEE
VGATER
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mRNA from alignment at S-dermatodea_contig13689:660..1873-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13689.2130.1 ID=mRNA_S-dermatodea_contig13689.2130.1|Name=mRNA_S-dermatodea_contig13689.2130.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1214bp|location=Sequence derived from alignment at S-dermatodea_contig13689:660..1873- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGGGCAGGCGCAATTGCTGGGAAGCGGAGCGGGGATTGGGGCATTTGGA
GAGGACGCTGGCGAAGAGAAAGGTGCGTTTTTGTCGTAGAGAAAAACAGA
CGGTGGACGCGTTCCTCATGTGTGTGTGTATATACGTAGTTCATATGTGT
ATGGTTATGGAGGATGGTGTTTTTGAGTGAAGGAGGCGTGCTTTGACCGT
TACATGCCGAACCGGCACTCCGGGCTATTGGTCGTGTGCTTGGCTTTTTT
TCGGGGTTCGTTTGTGTTGATTTTTCCGTCCCGGTGGTTGTTATGACTTT
AGCGCACTCTGCGCGCACTTCTTTCGGAGATGTGAACCAAACGATACCTT
TTGCCTTCGTTGCAGATGAGCTGCCAAGCCGTGTCCTGCCGATACACGCC
ACATACGGCATCAGCCATCACTTTTTTTTTTTTTTTTTTTTTTTTCCCCA
TTCTTTACGCATCTTCCCGTTCGGTGTGTTTTTGGCCTTCGCTCGCGATA
GACTTCGAAGTTGACGCAAGACAAAAAATGATTGTAGTATACAATACATA
CAGTAACTGTAAGAAGGTTTCTGTCTCCCCCAGCCCCAGTTTTTTTGTTT
TTTTGTTTTTTTGTCCCATTTTTCGACGGCCTAGCAACAGTCCTATTTTT
CCCGTCTGCCTGTTTTCGCTTGACTAGATGATCCCCATATCTCCCGCCGC
CCCCTATTACGTACAATACGATATGCTTTGTTTCTTCACATTGCGTTGGT
GTAAATGCACCGAATGTTTTTGCAACATATGACCATCTTGGGTTTTTCGT
GCTCGCATGAAAAGTAAGCCATGTTGTACTCTCAAATGTAATACATAAAA
GAAGACGAAAAAAAGAAGAAAAAAAATATGTATTTAATAACAGAAAACAT
CCAGCAGTAGACCTTTTAGATTCACCTTCAACTACAAGTATAACACTACT
GTTGTTGTACGTATTATGTCATAATTTTTAGCGTGCGTTGGGTTTGTTCA
GCACTTGCCCACGCGCGCAGGCGGCACTCTCGTCTATTCCCAGGAAGCTT
GTAGTGGTACAGTGGGCCAACGTTCGTGTTTGTTACCTGTACTTGTTTCT
TCTTATTGTTGGCCGCAGGAGGAAGCGCCGGAAGGCTCCTACACCAAGAG
GCTGTTTGAGGACCCCGTGCTCTTGAGGAACAAGCTCGTAGAGGAGGTGG
GAGCGACAGAAAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13689:660..1873-

>mRNA_S-dermatodea_contig13689.2130.1 ID=mRNA_S-dermatodea_contig13689.2130.1|Name=mRNA_S-dermatodea_contig13689.2130.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at S-dermatodea_contig13689:660..1873- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGGGCAGGCGCAATTGCTGGGAAGCGGAGCGGGGATTGGGGCATTTGGA
GAGGACGCTGGCGAAGAGAAAGTTGGGCAGGCGCAATTGCTGGGAAGCGG
AGCGGGGATTGGGGCATTTGGAGAGGACGCTGGCGAAGAGAAAGGAGGAA
GCGCCGGAAGGCTCCTACACCAAGAGGCTGTTTGAGGACCCCGTGCTCTT
GAGGAACAAGCTCGTAGAGGAGGTGGGAGCGACAGAAAGGGAGGAAGCGC
CGGAAGGCTCCTACACCAAGAGGCTGTTTGAGGACCCCGTGCTCTTGAGG
AACAAGCTCGTAGAGGAGGTGGGAGCGACAGAAAGG
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