mRNA_S-dermatodea_contig13684.2128.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13684.2128.1
Unique NamemRNA_S-dermatodea_contig13684.2128.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig13684.2128.1 vs. uniprot
Match: D7FT91_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT91_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 1.140e-66
Identity = 134/184 (72.83%), Postives = 145/184 (78.80%), Query Frame = 1
Query:    1 VDLRSATELERDELIHAEVYKGFVNVGGTSEHGTGVWEGPAWDEATMGDESKDTVREEGN---GACGNGXXXXXXXXSRRR---------YFVSLIDEGMYKKGVFQRLRRRHKAAVLALAPAAMLSRRVTQKARGIFLKEINAGGLVLLNELLLQYSGEGINRVLRLLASRERHPVALYCTAG 516
            VDLRSATEL  DELIH +VY+GFVNVGG    GTGV +GPAWDEA  G ES D +  +G     + G GXXXXXXXX             YFVSLIDE +YKKGVFQRLRRRHKAAVLALAPA M+SRR TQKARGIFL+EINAGGLVLLNELLLQYSG+GINRVLRLLAS+E HPVALYCTAG
Sbjct:  257 VDLRSATELGHDELIHGDVYEGFVNVGGGDHSGTGVSQGPAWDEAIQG-ESNDALPVQGKVGGASAGAGXXXXXXXXXXXXXXXXXXXXXYFVSLIDESIYKKGVFQRLRRRHKAAVLALAPATMVSRRCTQKARGIFLREINAGGLVLLNELLLQYSGDGINRVLRLLASKEHHPVALYCTAG 439          
BLAST of mRNA_S-dermatodea_contig13684.2128.1 vs. uniprot
Match: A0A4D9D8L3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8L3_9STRA)

HSP 1 Score: 107 bits (268), Expect = 9.320e-26
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = 1
Query:  229 RRYFVSLIDEGMYKKGVFQRLRRRHKAAVLALAPAAMLSRRVTQKARGIFLKEINAGGLVLLNELLLQYSGEGINRVLRLLASRERHPVALYCTAG 516
            +R+F+S+IDE +Y++GVF+RL +R KAA L L     +S+R  ++AR IFL  IN  GL LLN+LLL YSG  + RVL LL+ +ER+P+ALYCTAG
Sbjct:   42 QRHFISVIDESIYQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGPALRRVLELLSDKERYPIALYCTAG 137          
BLAST of mRNA_S-dermatodea_contig13684.2128.1 vs. uniprot
Match: W7TPH7_9STRA (Tyrosine-protein phosphatase family, C-terminal domain protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TPH7_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.570e-25
Identity = 54/96 (56.25%), Postives = 73/96 (76.04%), Query Frame = 1
Query:  229 RRYFVSLIDEGMYKKGVFQRLRRRHKAAVLALAPAAMLSRRVTQKARGIFLKEINAGGLVLLNELLLQYSGEGINRVLRLLASRERHPVALYCTAG 516
            +R+F+S+IDEG+Y++GVF+RL +R KAA L L     +S+R  ++AR IFL  IN  GL LLN+LLL YSG  + RVL LL+ +ER+P+ALYCTAG
Sbjct:  226 QRHFISVIDEGIYQRGVFKRLAKRKKAAALFLITGGAVSKRARRRARSIFLNYINDAGLPLLNDLLLNYSGPALRRVLELLSDKERYPIALYCTAG 321          
BLAST of mRNA_S-dermatodea_contig13684.2128.1 vs. uniprot
Match: A0A7S2UX35_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UX35_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.590e-23
Identity = 69/194 (35.57%), Postives = 102/194 (52.58%), Query Frame = 1
Query:    1 VDLRSATELERDELIHAEVYKGFVNVGGTSEHGTGVWE----------------------GPAWDEATMGDESKDTVREEGNGACGNGXXXXXXXXSRRRYFVSLIDEGMYKKGVFQRLRRRHKAAVLALAPAAMLSRRVTQKARGIFLKEINAGGLVLLNELLLQYSGEGINRVLRLLASRERHPVALYCTAG 516
            +DLRS  E++ D+     +++ F +V  T +     WE                        AW+      E ++  REE   A            + +RYF+SL++E +YKKGV  RL  R KAA +     A++S R  ++AR + LK++N GGL LLNELLL  SG+G+ R L++LA+ ER PVA++CTAG
Sbjct:  114 IDLRSPREID-DDKHEGSIFESFQSVDWTEDQQRRKWERRSKRSRAKYLVQRAAMELQGKAAAWNYRKKMSEKREKEREETMRA-----------KASQRYFISLMNESLYKKGVISRLGNRQKAAAVMYLAGAVVSTRAYKRARSLVLKKVNEGGLGLLNELLLSKSGKGVCRTLKILATPERLPVAIHCTAG 295          
BLAST of mRNA_S-dermatodea_contig13684.2128.1 vs. uniprot
Match: A0A7S2EB38_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EB38_TRICV)

HSP 1 Score: 96.7 bits (239), Expect = 1.970e-21
Identity = 50/97 (51.55%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  226 RRRYFVSLIDEGMYKKGVFQRLRRRHKAAVLALAPAAMLSRRVTQKARGIFLKEINAGGLVLLNELLLQYSGEGINRVLRLLASRERHPVALYCTAG 516
            R R+FVS+++E  Y +G   +LR+R     L  +PAA +SRR     +  FL+EIN GGL +LNELLL++   GI RVL L A R RHPVA YCTAG
Sbjct:   45 RERHFVSIMNEFKYVRGTLSKLRKRDVVRALLQSPAATVSRRARDDIKAPFLREINDGGLSMLNELLLRFGAPGIKRVLDLCADRSRHPVAFYCTAG 141          
BLAST of mRNA_S-dermatodea_contig13684.2128.1 vs. uniprot
Match: A0A7S2NYU5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NYU5_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 4.390e-21
Identity = 51/97 (52.58%), Postives = 67/97 (69.07%), Query Frame = 1
Query:  226 RRRYFVSLIDEGMYKKGVFQRLRRRHKAAVLALAPAAMLSRRVTQKARGIFLKEINAGGLVLLNELLLQYSGEGINRVLRLLASRERHPVALYCTAG 516
            + R+FVSL+DE  Y +G   +LR+R  A  +  +P A++S+RV    + IFL EINAGGL LLNEL+L+ +G GI  VL L A + RHPVA YCTAG
Sbjct:  190 KERHFVSLMDEIKYVRGTLSKLRKRDIAKAVLKSPGAVVSKRVRGNVKSIFLDEINAGGLPLLNELVLKMAGPGIKYVLDLCADKSRHPVAFYCTAG 286          
BLAST of mRNA_S-dermatodea_contig13684.2128.1 vs. uniprot
Match: A0A7S2XMM4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMM4_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 7.420e-21
Identity = 50/97 (51.55%), Postives = 67/97 (69.07%), Query Frame = 1
Query:  226 RRRYFVSLIDEGMYKKGVFQRLRRRHKAAVLALAPAAMLSRRVTQKARGIFLKEINAGGLVLLNELLLQYSGEGINRVLRLLASRERHPVALYCTAG 516
            + R+FVSL++E  Y +G   +LR R  A VL  +P A++S RV ++ + IFL EIN GGL +LNELLL++   GI  VL L+A + RHPVA YCTAG
Sbjct:  265 KERHFVSLMNELKYVRGTLSKLRMRDIANVLIKSPGAIVSSRVREECKDIFLDEINEGGLPMLNELLLRFGAPGIRHVLELMADKSRHPVAFYCTAG 361          
BLAST of mRNA_S-dermatodea_contig13684.2128.1 vs. uniprot
Match: A0A1E7FVC3_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVC3_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.020e-20
Identity = 65/192 (33.85%), Postives = 98/192 (51.04%), Query Frame = 1
Query:    1 VDLRSATELERDELIHAEVYKGFVNV----------GGTSEHGTGV----------WEGPAWDEATMGDESKDTVREEGNGACGNGXXXXXXXXSRRRYFVSLIDEGMYKKGVFQRLRRRHKAAVLALAPAAMLSRRVTQKARGIFLKEINAGGLVLLNELLLQYSGEGINRVLRLLASRERHPVALYCTAG 516
            VDLRS TEL  D+ + A++++GF ++          G   E   GV          ++    D+    +E    V  +       G         + R+FVSL++E  Y +G   ++R+R  A  +  AP A LS+R+    +  F+ EIN+GGL++LN+LLL++   GI  VL L A  +RHPVA YCTAG
Sbjct:  131 VDLRSPTELRDDDALMADIFRGFTDLVWIENGRRRDGCLKELKPGVSPVEKSRKSRFKKGGDDDVVSAEEEMCDVGCDDPQTVPAGRSLTKSGDRKERHFVSLMNEFKYVRGTVTKVRKRDIAKAIIKAPGAFLSKRIWNSLKEPFITEINSGGLIMLNDLLLRFGAPGIKYVLDLCAESDRHPVAFYCTAG 322          
BLAST of mRNA_S-dermatodea_contig13684.2128.1 vs. uniprot
Match: A0A448ZIR0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZIR0_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 6.450e-20
Identity = 70/196 (35.71%), Postives = 98/196 (50.00%), Query Frame = 1
Query:    1 VDLRSATELERDELIHAEVYKGFVNV----------GGTSEHGTGVWEGPAWDEATMG----DESKDTVREEGNGACGNGXXXXXXXXSRR----------RYFVSLIDEGMYKKGVFQRLRRRHKAAVLALAPAAMLSRRVTQKARGIFLKEINAGGLVLLNELLLQYSGEGINRVLRLLASRERHPVALYCTAG 516
            VDLRS TEL  D+ + AE + GF N+          G   E   GV       +  +     D S D   E+    C  G        + R          R+FVSL++E  Y +G   ++R+R  A  +  AP A LS+R+    +  F+ EIN+GGL++LN+LLL++   GI  VL L+A  +RHPVA YCTAG
Sbjct:  148 VDLRSPTELRDDDALMAECFDGFTNLVWIENGRRRDGCVRELAAGVSPVEKARKLRLSKKQLDASDDLAAEDE--MCEVGCDDPLTLPAERALTKSKDRNERHFVSLMNEFKYVRGTVTKVRKRDIAKAIIKAPGAFLSKRIWNSLKEPFITEINSGGLIMLNDLLLRFGAPGIKYVLDLVAESDRHPVAFYCTAG 341          
BLAST of mRNA_S-dermatodea_contig13684.2128.1 vs. uniprot
Match: A0A836CH30_9STRA (Protein-tyrosine phosphatase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH30_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.490e-19
Identity = 63/172 (36.63%), Postives = 91/172 (52.91%), Query Frame = 1
Query:    1 VDLRSATELERDELIHAEVYKGFVNVGGTSEHGTGVWEGPAWDEATMGDESKDTVREEGNGACGNGXXXXXXXXSRRRYFVSLIDEGMYKKGVFQRLRRRHKAAVLALAPAAMLSRRVTQKARGIFLKEINAGGLVLLNELLLQYSGEGINRVLRLLASRERHPVALYCTAG 516
            +DLRS  EL  D L+H+ VY  +  V   ++  +G W      +A +  E + T  +                 +++R+ +SLIDE  Y  G+  +     KA ++AL  A+ +SRR    A  + L+ I AGGL LLNE+LL   G  I R L+L+A  +RHPVALYCTAG
Sbjct:   97 IDLRSPKELGMDTLMHSPVYAPYETVD-LNQESSGSWR-----QAVLSTEVETTAED--------------FTPTKQRFLLSLIDERKYVSGLVLQAEIIDKAWLVALIGASAVSRRARAHATEVLLERIKAGGLPLLNEMLLLQGGPQIARALKLIADADRHPVALYCTAG 248          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13684.2128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FT91_ECTSI1.140e-6672.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A4D9D8L3_9STRA9.320e-2655.21Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TPH7_9STRA2.570e-2556.25Tyrosine-protein phosphatase family, C-terminal do... [more]
A0A7S2UX35_9STRA3.590e-2335.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2EB38_TRICV1.970e-2151.55Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2NYU5_9STRA4.390e-2152.58Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2XMM4_9STRA7.420e-2151.55Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A1E7FVC3_9STRA3.020e-2033.85Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A448ZIR0_9STRA6.450e-2035.71Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A836CH30_9STRA1.490e-1936.63Protein-tyrosine phosphatase-like protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13684contigS-dermatodea_contig13684:508..3530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.0
Seed ortholog evalue1.1e-55
Seed eggNOG ortholog2880.D7FT91
EggNOG free text desc.Pfam:Y_phosphatase3C
EggNOG OGs2AP1J@1,2RZFS@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTyrosine/serine-protein phosphatase IphP-type
Ec32 orthologEc-06_003660.1
Exons3
Model size516
Cds size516
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13684.2128.1prot_S-dermatodea_contig13684.2128.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13684 508..3530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924293.966024-CDS-S-dermatodea_contig13684:507..6031622924293.966024-CDS-S-dermatodea_contig13684:507..603Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13684 508..603 -
1694079157.2983007-CDS-S-dermatodea_contig13684:507..6031694079157.2983007-CDS-S-dermatodea_contig13684:507..603Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13684 508..603 -
1622924293.9740832-CDS-S-dermatodea_contig13684:1448..15621622924293.9740832-CDS-S-dermatodea_contig13684:1448..1562Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13684 1449..1562 -
1694079157.3179557-CDS-S-dermatodea_contig13684:1448..15621694079157.3179557-CDS-S-dermatodea_contig13684:1448..1562Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13684 1449..1562 -
1622924293.981861-CDS-S-dermatodea_contig13684:3224..35301622924293.981861-CDS-S-dermatodea_contig13684:3224..3530Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13684 3225..3530 -
1694079157.3275764-CDS-S-dermatodea_contig13684:3224..35301694079157.3275764-CDS-S-dermatodea_contig13684:3224..3530Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13684 3225..3530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13684.2128.1

>prot_S-dermatodea_contig13684.2128.1 ID=prot_S-dermatodea_contig13684.2128.1|Name=mRNA_S-dermatodea_contig13684.2128.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=172bp
VDLRSATELERDELIHAEVYKGFVNVGGTSEHGTGVWEGPAWDEATMGDE
SKDTVREEGNGACGNGGGGGGSGDSRRRYFVSLIDEGMYKKGVFQRLRRR
HKAAVLALAPAAMLSRRVTQKARGIFLKEINAGGLVLLNELLLQYSGEGI
NRVLRLLASRERHPVALYCTAG
back to top

mRNA from alignment at S-dermatodea_contig13684:508..3530-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13684.2128.1 ID=mRNA_S-dermatodea_contig13684.2128.1|Name=mRNA_S-dermatodea_contig13684.2128.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3023bp|location=Sequence derived from alignment at S-dermatodea_contig13684:508..3530- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGACCTGCGGAGCGCCACCGAGCTCGAGCGAGATGAGCTCATCCACGC CGAGGTCTACAAGGGCTTCGTTAACGTTGGGGGTACCTCCGAGCACGGCA CGGGAGTCTGGGAAGGGCCAGCGTGGGACGAGGCGACGATGGGGGACGAG AGCAAGGACACTGTTAGGGAAGAGGGGAATGGGGCGTGCGGCAATGGGGG GGGCGGTGGTGGTAGCGGCGACTCGCGCAGGAGATATTTTGTGTCGTTGA TCGACGAGGGCATGTACAAGAAGGGGGTGTTCCAGAGGCTGCGTCGGCGG CATAAGGTCAGCATGGTAGTGATTCCTGTCGCTGCCTATCGGAAAGGGAT ACTTGTACAGGGCGCAGAAAATGAGGCGATAACCCCCCCCAACCCCCCCC CCCCCACCCCCCCCCACCCCCCCCCCGTAAAATGCAACCTTTGGTTGCCG GTTATGTCCAATCAACCCATGACGTTTCGGTTGGCGTCGCAACCGCAAGG GTGATGACCAGCAGTTAGTATCGTCCTTGTGAACTGCACTCTGGCCGGCG AAAACCCGGCTTACCGCTCCGTCCCGGCATTGTTGAGATGCGTGGTCTAT GTCCGTCTGGATACGACATGCGTTTAACATAAGTACACACTCCTCCGCCC TAGAGACAATATACTTACAAAAAAACAGAAAGAGAGCCACGCCACTCCCC GCCTCGCCCGGGACCGTCCGGCCTCCAAGGCTCAACGTGCGATATTTTAG TTGGAGAGATGGGGCATCTGAGCCTTTCCGATAGAGAAGGGTGTGCGGGT GAGCCAGCTGCCTGTTGACGCCCCTTCGCAGCAGTGTTTCCAGGCCCCGT ATGACGTGGTTGTTTTTTGCTGTGCTGTCTTGTGTTAGCGCGGGCCGTAC TTGTTTTCGACTCGGAGCTTAGGCGCACCGAGGGCGGGGAGGGGAGGGGG GGTTACCACTTCCAAGCGACAATGAGTCGAACGATCAATGAAACGGATGA AAACTGCGAACGTGTCCCCGCGCGCTCGCATCAGTTGCCGGCCGGTTTTA AAGGAGTTCTCCGCGACCCAAGACAAATCTTGTGTGTAGTTCTGCTCTCA GATTTTTTATCCCCGGCGGTGTCTGTGGGTACAGGGGGGGGGGGGTGTCC CCGTGCTTCGTAGAAAGCCTTTTTCACAGCGAAGCAGCCATATCGGCCAA AAAACGGCTACACCATGTGCTGAAATCATGCACGTGGTACCCCCCACCAG ACCCTGCCATTCGTATCGTGTGAACTATTACTATTTGCTGGGATCGACCT TTCACGCATCCCCCTCGCAAAGACCGCATGTGTTTTTTGCGCAACAACAC AGGCGATACCTGGTGCAGTACTCGTCTGCTTTTTTGGGCACGCGGTGAAG AGCAATCGGCCCTATCGGCACCGGCTATTTTGTGTATCATCGATGGAGGC GTAGTCCGCAAGCATCTTGGCGTTTCTAGCAGAAGCAGCGGCAGCGGTGG TAGTAGCGTCGGCACGGACAGGGGTGTTGCGAAAGCAGCACTTCCTTCGA ATTTTCGCGCCCCAAGTTGCACCCAATCATGATCCGAACCATGGATTGGA TTGGATTGGATTGAATCGTGTTGGATTGGATTACGCTATTCCATCGTTTG TCTTGGTTTTGTCTCTGTCTCCACTACCGATCAGCCAACCATTCCAATGC AGATCCTGCTGGAGTTCACGAGGGAATCAATCGCCCCTTATCTTCCGCGC GCCACACCGAGTTTCACCTATCGCTCGTTGGCAACCTTTCCCCCCCCCCC CTCCTCCCGGCCGCTTTTCGGGGTTTGGGTGGGGGTAGGCCCCCCAACCA TTTCCTCACAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCGTCCCCCGCC CCCGCGCGCTTCCCGCCCCAACGCCTTCTCCCTCAATCTCGCGCTTGGGC GTGATGTGCGTGAGTCAGGCAGCCGTGTTGGCGCTTGCTCCGGCGGCTAT GTTGTCCCGCCGCGTGACGCAGAAAGCGCGCGGAATTTTCTTGAAGGAGA TAAACGCGGGCGGGTTGGTTCTCCTCAACGAGGTGCGGTTTAGCTGATGG GTGTTGCAAAAAAATACGCCAGGTCGCGCGCGCACGCGGGTGGAGGGGGG GGTGCGTACTCATGCTTTGCATGCCTTAGCTGTTAGACCATTGGCCACGC GTCCTCGATAGGACGGAGCATTGTTCCTGCAGGATCGATCGCCGATGGCC AATCGTTCCTTTCCTACTCTGCCGAAAGATGGCGTTAAAATGTTTTTCCT CATTATGCTACGACCATATTCCGCAGACAATGACACTTGCACACTGGTTG ATTATAGAATCACAAATAACTGAATAAAACCATGACATCGTACGTAATGT AAGCCTCCACAGGTGTAGAATAGCTTGGGACCATATTTCCTTCCTTCAAA TAGGTGGGGGACCCCAACGCTCGCTCCTGCTTTTAAAGTCATTTGTTTTT TACGGGGGGGGGAGGGCAGGGCAGTCTTGTTGGTTTCGATGCGGCATTCA GCACGAAATTTTGGCTGCCAAAACAATGTTCTGCATTCGTGTGTGTGTGT GTACGTTTTACTGTGTGATGCATCGCGCGTTGCGGTACGTCTCTGAACAA GTCCTCTGGGCTTTGTTCGACTGCCGCTCGTCTTGCGGAGGCGGCGGCGG GGGGGGGGGGGGGGGCATCGCGCGTGTGCAGGGCCTTGCTTCTCCATGCG CTGGGGGGGCGTTCATGTCCGCTGTCATCTTAGAATAACTCGGGCGGCGG TTTTTCTCTCGGTTATCAAGCGCGAACTATGGTGCGCCGCTACGTAACAG CCAGCACTTGCTTGTTTTTGTTTTAGCTCGTTTTTGCGCCTCTATTTTTC TTCACTTTCATTCGTTTTTGCCAACAGCTTCTCCTGCAGTACTCTGGGGA GGGGATCAACCGCGTGCTTCGTTTGCTGGCCTCCAGGGAGCGCCACCCCG TCGCCCTCTACTGCACCGCAGGT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13684:508..3530-

>mRNA_S-dermatodea_contig13684.2128.1 ID=mRNA_S-dermatodea_contig13684.2128.1|Name=mRNA_S-dermatodea_contig13684.2128.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at S-dermatodea_contig13684:508..3530- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGACCTGCGGAGCGCCACCGAGCTCGAGCGAGATGAGCTCATCCACGC
CGAGGTCTACAAGGGCTTCGTTAACGTTGGGGGTACCTCCGAGCACGGCA
CGGGAGTCTGGGAAGGGCCAGCGTGGGACGAGGCGACGATGGGGGACGAG
AGCAAGGACACTGTTAGGGAAGAGGGGAATGGGGCGTGCGGCAATGGGGG
GGGCGGTGGTGGTAGCGGCGACTCGCGCAGGAGATATTTTGTGTCGTTGA
TCGACGAGGGCATGTACAAGAAGGGGGTGTTCCAGAGGCTGCGTCGGCGG
CATAAGGTCGACCTGCGGAGCGCCACCGAGCTCGAGCGAGATGAGCTCAT
CCACGCCGAGGTCTACAAGGGCTTCGTTAACGTTGGGGGTACCTCCGAGC
ACGGCACGGGAGTCTGGGAAGGGCCAGCGTGGGACGAGGCGACGATGGGG
GACGAGAGCAAGGACACTGTTAGGGAAGAGGGGAATGGGGCGTGCGGCAA
TGGGGGGGGCGGTGGTGGTAGCGGCGACTCGCGCAGGAGATATTTTGTGT
CGTTGATCGACGAGGGCATGTACAAGAAGGGGGTGTTCCAGAGGCTGCGT
CGGCGGCATAAGGCAGCCGTGTTGGCGCTTGCTCCGGCGGCTATGTTGTC
CCGCCGCGTGACGCAGAAAGCGCGCGGAATTTTCTTGAAGGAGATAAACG
CGGGCGGGTTGGTTCTCCTCAACGAGGCAGCCGTGTTGGCGCTTGCTCCG
GCGGCTATGTTGTCCCGCCGCGTGACGCAGAAAGCGCGCGGAATTTTCTT
GAAGGAGATAAACGCGGGCGGGTTGGTTCTCCTCAACGAGCTTCTCCTGC
AGTACTCTGGGGAGGGGATCAACCGCGTGCTTCGTTTGCTGGCCTCCAGG
GAGCGCCACCCCGTCGCCCTCTACTGCACCGCAGGTCTTCTCCTGCAGTA
CTCTGGGGAGGGGATCAACCGCGTGCTTCGTTTGCTGGCCTCCAGGGAGC
GCCACCCCGTCGCCCTCTACTGCACCGCAGGT
back to top