mRNA_S-dermatodea_contig13679.2125.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13679.2125.1
Unique NamemRNA_S-dermatodea_contig13679.2125.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13679.2125.1 vs. uniprot
Match: D7FI62_ECTSI (Protein tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI62_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 1.410e-10
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 QGGEEHALREIEVLAGLMPCCHPNIINVFATNVANRTVVMEAMYRDLQSVIEN---QYLHVSDRQMV 192
            +G  +  +REI +LA  MP CHPNI NVFATN+A R++VME M+ DL+ ++ +       VS  QMV
Sbjct:  816 KGTRDTGMREIRMLASFMPTCHPNITNVFATNIATRSIVMEKMHMDLEHLLNHTREDIDRVSQDQMV 882
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BLAST of mRNA_S-dermatodea_contig13679.2125.1 vs. uniprot
Match: A0A6H5KSE9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSE9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.920e-10
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 QGGEEHALREIEVLAGLMPCCHPNIINVFATNVANRTVVMEAMYRDLQSVIEN 159
            +G  +  +REI +LA  MP CHPNI NVFATN+A R++VME M+ DL+ ++ +
Sbjct:  974 KGKRDTGIREIRMLASFMPTCHPNITNVFATNIATRSIVMEKMHMDLEHLLNH 1026
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BLAST of mRNA_S-dermatodea_contig13679.2125.1 vs. uniprot
Match: D7FI46_ECTSI (p38 Map Kinase family member (Pmk-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI46_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 4.910e-10
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    1 QGGEEHALREIEVLAGLMPCCHPNIINVFATNVANRTVVMEAMYRDLQSVIE---NQYLHVSDRQMVG 195
            +G ++  +REI VLA  MP CH NI+NVFATNV  R++VME M  DL+ ++     +   VS  +MVG
Sbjct:  906 KGHKDTGMREIRVLASFMPACHTNIVNVFATNVETRSIVMEKMGIDLERLLSCTIRELRRVSHDEMVG 973
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13679.2125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FI62_ECTSI1.410e-1047.76Protein tyrosine kinase n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSE9_9PHAE1.920e-1050.94Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FI46_ECTSI4.910e-1047.06p38 Map Kinase family member (Pmk-1) n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13679contigS-dermatodea_contig13679:527..1235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue2.4e-08
Seed eggNOG ortholog2880.D7FI62
KEGG koko:K02836,ko:K08818,ko:K10772
KEGG Pathwayko03410,map03410
KEGG ModuleM00296
EggNOG free text desc.cyclin-dependent protein serine/threonine kinase activity
EggNOG OGsKOG0663@1,KOG0663@2759
EC2.7.11.22,4.2.99.18
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03012,ko03041,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924293.8203752-CDS-S-dermatodea_contig13679:526..6771622924293.8203752-CDS-S-dermatodea_contig13679:526..677Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13679 527..677 -
1694079157.235449-CDS-S-dermatodea_contig13679:526..6771694079157.235449-CDS-S-dermatodea_contig13679:526..677Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13679 527..677 -
1622924293.8425527-CDS-S-dermatodea_contig13679:1188..12351622924293.8425527-CDS-S-dermatodea_contig13679:1188..1235Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13679 1189..1235 -
1694079157.2457666-CDS-S-dermatodea_contig13679:1188..12351694079157.2457666-CDS-S-dermatodea_contig13679:1188..1235Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13679 1189..1235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13679.2125.1prot_S-dermatodea_contig13679.2125.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13679 527..1235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13679.2125.1

>prot_S-dermatodea_contig13679.2125.1 ID=prot_S-dermatodea_contig13679.2125.1|Name=mRNA_S-dermatodea_contig13679.2125.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=66bp
QGGEEHALREIEVLAGLMPCCHPNIINVFATNVANRTVVMEAMYRDLQSV
IENQYLHVSDRQMVG*
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mRNA from alignment at S-dermatodea_contig13679:527..1235-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13679.2125.1 ID=mRNA_S-dermatodea_contig13679.2125.1|Name=mRNA_S-dermatodea_contig13679.2125.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=709bp|location=Sequence derived from alignment at S-dermatodea_contig13679:527..1235- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGAGGCGAGGAGCACGCTCTCCGGGAGATCGAGGTGCTGGCAGGGTA
AGCAGCATGTTTGAAGCAAGCGTGGGCTCACCGCAGTCTGAGACCCTCCC
TGGAATGCACAAACCGCCTGCCATTTACTTTGTCCTGCATCAGGATGTCG
ATGCCCCCCCAAGTGCACTCTGTCTTAATATCACCCGCGAGACCCTGGGA
GGCTGGTAGAGTTTCACAGCGTAAGAATGTCGACTGAGCTGCTGTTCTTC
TTGACGATAGCAACGTAACGGCGTGTTTGCCTCTGGGCCATGCCGTCTGT
GTGTTTCATCCTGGAGAGTGGTAGCGGATGTAGCGGAGAGGTGGTTCGCC
GTGGTGTAGAAACGAGCTGGTAGATTCTGAATTCGTTCCGTTCTCTTGCA
AATCAGCGTGTTCTAGTCGAACGCTTCCTTGGTCTGGAAGCCCTCTTCAA
CCGACCACTTGTGCCCGTGCTCTCGACCGCTTGTACAACACATGCGCGTT
CGCCTCGCATGCTGTACGTTCCGGTACTATCGCCTTGAACGTGTTGCTGT
ACTGACAGGCTGATGCCGTGCTGCCACCCCAACATCATCAACGTTTTCGC
CACCAACGTCGCGAACCGCACCGTCGTGATGGAGGCGATGTACCGCGATC
TACAGTCGGTGATCGAGAACCAGTACTTGCACGTGTCCGACAGGCAGATG
GTTGGGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13679:527..1235-

>mRNA_S-dermatodea_contig13679.2125.1 ID=mRNA_S-dermatodea_contig13679.2125.1|Name=mRNA_S-dermatodea_contig13679.2125.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at S-dermatodea_contig13679:527..1235- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGGAGGCGAGGAGCACGCTCTCCGGGAGATCGAGGTGCTGGCAGGCAG
GGAGGCGAGGAGCACGCTCTCCGGGAGATCGAGGTGCTGGCAGGGCTGAT
GCCGTGCTGCCACCCCAACATCATCAACGTTTTCGCCACCAACGTCGCGA
ACCGCACCGTCGTGATGGAGGCGATGTACCGCGATCTACAGTCGGTGATC
GAGAACCAGTACTTGCACGTGTCCGACAGGCAGATGGTTGGGTAAGCTGA
TGCCGTGCTGCCACCCCAACATCATCAACGTTTTCGCCACCAACGTCGCG
AACCGCACCGTCGTGATGGAGGCGATGTACCGCGATCTACAGTCGGTGAT
CGAGAACCAGTACTTGCACGTGTCCGACAGGCAGATGGTTGGGTAA
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