mRNA_S-dermatodea_contig13668.2120.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13668.2120.1
Unique NamemRNA_S-dermatodea_contig13668.2120.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig13668.2120.1 vs. uniprot
Match: D8LLN6_ECTSI (Oxidoreductase, short chain dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLN6_ECTSI)

HSP 1 Score: 377 bits (969), Expect = 1.850e-129
Identity = 181/228 (79.39%), Postives = 208/228 (91.23%), Query Frame = 1
Query:    1 STLTPTLVGVQALGVKVIEGIDVSDADSGAKLVGAVREKLGEGRTLDYVICNAGILTPDTFEDPKYDAAVKMYEVCVLGPLRALQSLTMAGLLREGSKVGMITSEGGSVSLRTELEGGNNYGHHMSKCAQNMMGKLFALDVKPRGIAIVCLHPGFMKTTMTQIYADKYEELGAIGPEEAAPGIVKAVEDLTLETTGRFIAPQGSKSLGLGLYALDNPDDYGPFSQLPW 684
            +T   T   ++A+GV V+EGIDVSD DSG KLV AV+++LGEG TLDYVICNAGIL PDTFEDP++DAAVKMYEVCVLGPLR LQ+L ++GLLR+GS +GMITSEGGSV LRTE+EGGNNYGHHMSKCAQNMMGKLFALDVK RG+AIV +HPGFMKT+MT+IYADKY+ELGAIGPEEAAPGIVKAVEDLTLETTG+FIAPQGSKSLGLG+YAL++P+ YGPF +LPW
Sbjct:  113 ATTRTTNADLEAVGVSVLEGIDVSDKDSGTKLVEAVQKELGEGGTLDYVICNAGILIPDTFEDPEFDAAVKMYEVCVLGPLRVLQALVVSGLLRKGSNIGMITSEGGSVGLRTEVEGGNNYGHHMSKCAQNMMGKLFALDVKTRGVAIVNIHPGFMKTSMTEIYADKYDELGAIGPEEAAPGIVKAVEDLTLETTGKFIAPQGSKSLGLGVYALEDPESYGPFCELPW 340          
BLAST of mRNA_S-dermatodea_contig13668.2120.1 vs. uniprot
Match: A0A1X6NYS2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NYS2_PORUM)

HSP 1 Score: 214 bits (544), Expect = 4.790e-66
Identity = 110/229 (48.03%), Postives = 153/229 (66.81%), Query Frame = 1
Query:    1 STLTPTLVGVQALGVKVIEGIDVSDADSGAKLVGAVREKLGEGRT-LDYVICNAGILTPDTFEDPKYDAAVKMYEVCVLGPLRALQSLTMAGLLREGSKVGMITSEGGSVSLRTELEGGNNYGHHMSKCAQNMMGKLFALDVKPRGIAIVCLHPGFMKTTMTQIYADKYEELGAIGPEEAAPGIVKAVEDLTLETTGRFIAPQGSKSLGLGLYALDNPDDYGPFSQLPW 684
            +T+ P L   + L   +I GIDV+  D   KLV    E    G   +  ++C AGIL PD+  D + D   +M +VC LGPLR + +L  AGLL  GSKVG++TSEGGS+ LRT  EGG NYGHH SK A+NM GK+ +LD+  RG+ +VC+HPGFMK++MT+ + +KY+ELGA+ P  AA G+V+ ++ L  + TGRFI P GS++LG G++ L+  +  GP S+LPW
Sbjct:   44 NTVDPAL---EELDASIIRGIDVA-TDGPDKLV---EELAALGWVNVSTLVCVAGILKPDSLGDLQPDNWRQMMDVCALGPLRIVDALVTAGLLTAGSKVGLVTSEGGSIGLRTPKEGGGNYGHHCSKAAENMAGKILSLDLAERGMPLVCIHPGFMKSSMTEPFKEKYDELGAVEPHVAAKGVVECMKQLNKDNTGRFIQPLGSENLGFGVWGLEEAEKKGPMSELPW 265          
BLAST of mRNA_S-dermatodea_contig13668.2120.1 vs. uniprot
Match: A0A7S1ESF3_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ESF3_9RHOD)

HSP 1 Score: 178 bits (451), Expect = 3.570e-51
Identity = 88/187 (47.06%), Postives = 125/187 (66.84%), Query Frame = 1
Query:  136 LDYVICNAGILTPDTFEDPKYDAAVKMYEVCVLGPLRALQSLTMAGLLREGSKVGMITSEGGSVSLRTELEGGNNYGHHMSKCAQNMMGKLFALDVKPRGIAIVCLHPGFMKTTMTQIYADKY----EELGAIGPEEAAPGIVKAVEDLTLETTGRFIAPQGSKSLGLGLYALDNPDDYGPFSQLPW 684
            +D V+  +G  T +T ++   +  VKM+++C + P + L S+         +K+G ITSEGGS+ LRTE EGG NYGHHMSK + NM+GKL A D+KP GI++V +HPGF++T MT   ADKY    +ELGA+    A P I++ V DL+LE+TGRF+A  G+  LGLG+YA+++P    P + LPW
Sbjct:  153 VDTVMMVSGYFTTETLDEFNREEEVKMFKICAISPGQILTSMHKNKKFAPNAKIGFITSEGGSIGLRTEKEGGLNYGHHMSKASSNMLGKLLAYDLKPFGISMVMIHPGFLRTDMT---ADKYSHLWDELGAVTAATAVPYILQCVADLSLESTGRFVAAMGAHGLGLGIYAIEDPSKLVPGADLPW 336          
BLAST of mRNA_S-dermatodea_contig13668.2120.1 vs. uniprot
Match: A0A0F7SXX7_PHARH (Short chain dehydrogenase reductase family superfamily n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SXX7_PHARH)

HSP 1 Score: 172 bits (437), Expect = 1.210e-49
Identity = 97/228 (42.54%), Postives = 139/228 (60.96%), Query Frame = 1
Query:    1 STLTPTLVGVQALGVKVIEGIDVSDADSGAKLVGAVREKLGEGRTLDYVICNAGILTPDTFEDPKYDAAVKMYEVCVLGPLRALQSLTMAGLLREGSKVGMITSEGGSVSLRTELEGGNNYGHHMSKCAQNMMGKLFALDVKPRGIAIVCLHPGFMKTTMTQIYADKYEELGAIGPEEAAPGIVKAVEDLTLETTGRFIAPQGSKSLGLGLYALDNPDDYGPFSQLPW 684
            +T +P   G    GV VIEGIDV +  +G  LV    EKL EG  LD  +  AG+L  +TF++P + A + MY++C +GP+    +L+ +      +K+ ++TSEGGS++LRTE EGG  +GHH SK A NM+G L + D+KP+G+ +V +HPGF+ T MT    D Y++ GA+ PE AAP  +  V+ +TL+ TG+F AP G K +G     L    D     QLPW
Sbjct:   68 TTRSPAKEGTFPDGVHVIEGIDVGEPGAGKTLV----EKL-EGAKLDLTVIVAGLLKEETFKEPDFQAEMDMYKICAVGPVFITSALSKSSFA-SNAKLILLTSEGGSITLRTEKEGGGMFGHHGSKAAANMVGHLLSYDLKPKGVTVVMIHPGFLITDMTGGMKDHYKKGGAVKPEVAAPIFLDFVDTVTLKHTGQFWAPMGPKGIGNAEEVLGK--DLPTPLQLPW 287          
BLAST of mRNA_S-dermatodea_contig13668.2120.1 vs. uniprot
Match: A0A8H6G570_9LECA (Uncharacterized protein n=2 Tax=Parmeliaceae TaxID=78060 RepID=A0A8H6G570_9LECA)

HSP 1 Score: 171 bits (434), Expect = 1.230e-49
Identity = 92/216 (42.59%), Postives = 134/216 (62.04%), Query Frame = 1
Query:   43 VKVIEGIDVSDADSGAKLVGAVREKLGEGRTLDYVICNAGILTPDTFEDPKYDAAVKMYEVCVLGPLRALQSLTMAGLLREGSKVGMITSEGGSVSLRTELEGGNNYGHHMSKCAQNMMGKLFALDVKPRGIAIVCLHPGFMKTTMTQ-IYADKY-EELGAIGPEEAAPGIVKAVEDLTLETTGRFIAPQGSKSLGLGLYALDNPDDYGPFSQLPW 684
            ++ I  IDV+  D+G KL   + +K     TLD VI  AG    ++F  P +D  VKMY    +GP+  +  L  AGLL +GSK+ +++SE GS++LR E EGG NYGHH SK A NM+GKL +LD+K +G+A+  +HPGFM+T MT+ +  DK+ ++ GA+ P+EAA  ++K +E   +E TG + AP+G + +G     L    D     QLPW
Sbjct:   43 IEYIANIDVAKEDAGQKLASHIGKK-----TLDTVIITAGYFATESFGSPSWDNQVKMYTTSSIGPVFIVHYLVKAGLLAKGSKIILVSSESGSITLRHESEGGGNYGHHASKSALNMVGKLLSLDLKEKGVAVGIVHPGFMRTEMTRGVGFDKFWDDGGAVTPDEAAKSLIKFIETFDIEKTGEYWAPRGPRDIGTAEAVLGK--DLSTPLQLPW 251          
BLAST of mRNA_S-dermatodea_contig13668.2120.1 vs. uniprot
Match: A0A8H3IKQ9_9LECA (Uncharacterized protein n=1 Tax=Heterodermia speciosa TaxID=116794 RepID=A0A8H3IKQ9_9LECA)

HSP 1 Score: 169 bits (429), Expect = 7.600e-49
Identity = 88/213 (41.31%), Postives = 134/213 (62.91%), Query Frame = 1
Query:   52 IEGIDVSDADSGAKLVGAVREKLGEGRTLDYVICNAGILTPDTFEDPKYDAAVKMYEVCVLGPLRALQSLTMAGLLREGSKVGMITSEGGSVSLRTELEGGNNYGHHMSKCAQNMMGKLFALDVKPRGIAIVCLHPGFMKTTMTQ-IYADKYEELG-AIGPEEAAPGIVKAVEDLTLETTGRFIAPQGSKSLGLGLYALDNPDDYGPFSQLPW 684
            +EGID++  D+G  +V  ++     G+TLD VI  AG    +TF+ P +DA V+MY++  +GP+  +  L  AGL+ +  K+ +++SE GS++LR E EGG NYGHH SK A NM GKL +LD+K +GIA+  +HPGFM+T MT+ +  DKY + G A+ P+EAA  + + +  L + +TG + AP+G + +G     L    +     QLPW
Sbjct:   47 VEGIDIASEDAGPSIVKRIKPS---GKTLDVVIITAGYFATETFDKPDFDAEVQMYKISSIGPVFIVHHLVKAGLMAKDGKIVLVSSESGSITLRHESEGGGNYGHHASKAALNMAGKLLSLDLKAKGIAVGIVHPGFMRTEMTKGVGFDKYWDAGGAVTPDEAAASLKQYISKLDMGSTGEYWAPRGPRDIGTAEPVLGK--NLPTPLQLPW 254          
BLAST of mRNA_S-dermatodea_contig13668.2120.1 vs. uniprot
Match: A0A0A2IQS7_PENEN (Short-chain dehydrogenase/reductase SDR n=17 Tax=Penicillium TaxID=5073 RepID=A0A0A2IQS7_PENEN)

HSP 1 Score: 169 bits (427), Expect = 1.480e-48
Identity = 96/217 (44.24%), Postives = 130/217 (59.91%), Query Frame = 1
Query:   40 GVKVIEGIDVSDADSGAKLVGAVREKLGEGRTLDYVICNAGILTPDTFEDPKYDAAVKMYEVCVLGPLRALQSLTMAGLLREGSKVGMITSEGGSVSLRTELEGGNNYGHHMSKCAQNMMGKLFALDVKPRGIAIVCLHPGFMKTTMTQ-IYADKYEELG-AIGPEEAAPGIVKAVEDLTLETTGRFIAPQGSKSLGLGLYALDNPDDYGPFSQLPW 684
            GV  + GID+S  D G KLV  +         L  VI NAG    +TF+ P ++  V+MY    +GP+  + +L  AGLL +GSKV +I+SE GS++LR E EGG N+GHH SK A NM+GKL +LD+KP+GIA+  +HPGFM+T MT+ +  DKY + G A+ P+EAA  +   +E   L  TG F AP G K +G     L    +     QLPW
Sbjct:   44 GVTWLTGIDISQPDVGQKLVSQL-----PSTKLSTVIVNAGYFGFETFDSPDWEKQVQMYTTSAIGPVFVVHNLVKAGLLDQGSKVILISSESGSITLRHEKEGGGNFGHHASKAALNMVGKLLSLDLKPKGIAVGLVHPGFMRTEMTKSVGFDKYWDAGGAVTPDEAAKTLASFIEGFDLRQTGEFWAPGGPKDIGTAEDVLGK--NLSTPLQLPW 253          
BLAST of mRNA_S-dermatodea_contig13668.2120.1 vs. uniprot
Match: A0A1Y2B5S0_9TREE (Putative cytoplasm protein n=1 Tax=Naematelia encephala TaxID=71784 RepID=A0A1Y2B5S0_9TREE)

HSP 1 Score: 169 bits (427), Expect = 1.800e-48
Identity = 86/219 (39.27%), Postives = 138/219 (63.01%), Query Frame = 1
Query:   40 GVKVIEGIDVSDADSGAKLVGAVREKLGEGRTLDYVICNAGILTPDTFEDPKYDAAVKMYEVCVLGPLRALQSLTMAGLLREGSKVGMITSEGGSVSLRTELEGGNNYGHHMSKCAQNMMGKLFALDVKPRGIAIVCLHPGFMKTTMTQIYA--DKYEELGAIGPEEAAPGIVKAVEDLTLETTGRFIAPQGSKSLGLGLYALDNP--DDYGPFSQLPW 684
            GV VIEG+DVS  D G K+V  ++     GR+++ V+  AG+L P+ F +  ++  + MY +C + P++ +++L M+  L   +K+ ++TSEGGS++LRT+ EGG  +GHH SK A NM+G+L + D++ RGI I  +HPGF+KT MT+     + Y+++GA+ PEEAA    + V+ L +  TG+  AP G++ +G     +     D  GP  +LPW
Sbjct:   48 GVNVIEGVDVSKPDCGDKVVNGLK-----GRSVEVVVVVAGLLKPEKFGESNWEDEIAMYTICAIAPVKLVEALVMSSSLAPAAKIILLTSEGGSITLRTQGEGGGMFGHHGSKAAGNMVGRLLSFDLQERGIPIAMVHPGFLKTEMTKNAGMEEFYDQMGAVTPEEAAIPFAEFVDKLDMSMTGKLWAPMGARGIGNAEEVMGKSVKDHKGPL-ELPW 260          
BLAST of mRNA_S-dermatodea_contig13668.2120.1 vs. uniprot
Match: A0A507QYT0_MONPU (Uncharacterized protein n=1 Tax=Monascus purpureus TaxID=5098 RepID=A0A507QYT0_MONPU)

HSP 1 Score: 168 bits (426), Expect = 2.850e-48
Identity = 90/193 (46.63%), Postives = 124/193 (64.25%), Query Frame = 1
Query:   52 IEGIDVSDADSGAKLVGAVREKLGEGRTLDYVICNAGILTPDTFEDPKYDAAVKMYEVCVLGPLRALQSLTMAGLLREGSKVGMITSEGGSVSLRTELEGGNNYGHHMSKCAQNMMGKLFALDVKPRGIAIVCLHPGFMKTTMTQ-IYADKY-EELGAIGPEEAAPGIVKAVEDLTLETTGRFIAPQGSKSLG 624
            +  IDVS  D G KLV     +L     L   I +AG    +TF+ P +D  VKMY    +GP+  + SL  AGLL EGSKV +++SE GS++LR E EGG NYGHH SK A NM+GKL +LD+K +GIA+  +HPGFM+T MT+ +  DKY E  GA+ P+EAA  ++  V+D  +  TG++ AP+G+  +G
Sbjct:   52 LTNIDVSQPDVGQKLV----SQLPSATKLSTAIISAGYFGFETFDSPDWDKEVKMYTTSAIGPVFVVHSLVKAGLLHEGSKVILVSSESGSITLRHEKEGGGNYGHHASKAALNMVGKLLSLDLKEKGIAVGLVHPGFMRTEMTKGVGFDKYWESGGAVTPDEAAKSLISFVDDFDISKTGQYWAPRGAGDIG 240          
BLAST of mRNA_S-dermatodea_contig13668.2120.1 vs. uniprot
Match: A0A8E0QQJ0_9EURO (Uncharacterized protein n=2 Tax=Aspergillus udagawae TaxID=91492 RepID=A0A8E0QQJ0_9EURO)

HSP 1 Score: 168 bits (426), Expect = 4.090e-48
Identity = 93/213 (43.66%), Postives = 129/213 (60.56%), Query Frame = 1
Query:   52 IEGIDVSDADSGAKLVGAVREKLGEGRTLDYVICNAGILTPDTFEDPKYDAAVKMYEVCVLGPLRALQSLTMAGLLREGSKVGMITSEGGSVSLRTELEGGNNYGHHMSKCAQNMMGKLFALDVKPRGIAIVCLHPGFMKTTMTQ-IYADKYEELG-AIGPEEAAPGIVKAVEDLTLETTGRFIAPQGSKSLGLGLYALDNPDDYGPFSQLPW 684
            ++ IDVS  + G  LV     +L     L YVI  AG    +TF+DP ++  VKMY    +GP+  +Q L  AGLL +GSKV +++SE GS++LR E EGG NYGHH SK A NM+GKL +LD+K +GIA+  +HPGFM+T MT+ +  DKY + G A+ P+EAA  +   ++   +  TG+F AP+G   +G     L    D     QLPW
Sbjct:   71 VQNIDVSQPNVGETLV----SQLPSSTKLSYVIITAGYFGFETFDDPDWEKEVKMYTTSAIGPVFVVQRLVKAGLLDKGSKVILVSSESGSIALRHEKEGGGNYGHHASKAALNMVGKLLSLDLKEKGIAVGLVHPGFMRTEMTKSVGFDKYWDAGGAVTPDEAAQSLASFIDGFDISQTGQFWAPRGPGDIGTAEAVLGK--DLSTPLQLPW 277          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13668.2120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLN6_ECTSI1.850e-12979.39Oxidoreductase, short chain dehydrogenase n=2 Tax=... [more]
A0A1X6NYS2_PORUM4.790e-6648.03Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S1ESF3_9RHOD3.570e-5147.06Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A0F7SXX7_PHARH1.210e-4942.54Short chain dehydrogenase reductase family superfa... [more]
A0A8H6G570_9LECA1.230e-4942.59Uncharacterized protein n=2 Tax=Parmeliaceae TaxID... [more]
A0A8H3IKQ9_9LECA7.600e-4941.31Uncharacterized protein n=1 Tax=Heterodermia speci... [more]
A0A0A2IQS7_PENEN1.480e-4844.24Short-chain dehydrogenase/reductase SDR n=17 Tax=P... [more]
A0A1Y2B5S0_9TREE1.800e-4839.27Putative cytoplasm protein n=1 Tax=Naematelia ence... [more]
A0A507QYT0_MONPU2.850e-4846.63Uncharacterized protein n=1 Tax=Monascus purpureus... [more]
A0A8E0QQJ0_9EURO4.090e-4843.66Uncharacterized protein n=2 Tax=Aspergillus udagaw... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13668contigS-dermatodea_contig13668:3092..6508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score377.1
Seed ortholog evalue5.9e-102
Seed eggNOG ortholog2880.D8LLN6
EggNOG free text desc.cellular detoxification of aldehyde
EggNOG OGsCOG1028@1,KOG1611@2759
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size687
Cds size687
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13668.2120.1prot_S-dermatodea_contig13668.2120.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13668 3092..6508 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924293.5813365-CDS-S-dermatodea_contig13668:3091..32231622924293.5813365-CDS-S-dermatodea_contig13668:3091..3223Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13668 3092..3223 -
1694079157.0740304-CDS-S-dermatodea_contig13668:3091..32231694079157.0740304-CDS-S-dermatodea_contig13668:3091..3223Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13668 3092..3223 -
1622924293.591691-CDS-S-dermatodea_contig13668:3725..39151622924293.591691-CDS-S-dermatodea_contig13668:3725..3915Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13668 3726..3915 -
1694079157.083345-CDS-S-dermatodea_contig13668:3725..39151694079157.083345-CDS-S-dermatodea_contig13668:3725..3915Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13668 3726..3915 -
1622924293.6010346-CDS-S-dermatodea_contig13668:4245..43881622924293.6010346-CDS-S-dermatodea_contig13668:4245..4388Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13668 4246..4388 -
1694079157.0937774-CDS-S-dermatodea_contig13668:4245..43881694079157.0937774-CDS-S-dermatodea_contig13668:4245..4388Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13668 4246..4388 -
1622924293.6135104-CDS-S-dermatodea_contig13668:5245..53061622924293.6135104-CDS-S-dermatodea_contig13668:5245..5306Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13668 5246..5306 -
1694079157.103552-CDS-S-dermatodea_contig13668:5245..53061694079157.103552-CDS-S-dermatodea_contig13668:5245..5306Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13668 5246..5306 -
1622924293.6224668-CDS-S-dermatodea_contig13668:6347..65081622924293.6224668-CDS-S-dermatodea_contig13668:6347..6508Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13668 6348..6508 -
1694079157.1197894-CDS-S-dermatodea_contig13668:6347..65081694079157.1197894-CDS-S-dermatodea_contig13668:6347..6508Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13668 6348..6508 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13668.2120.1

>prot_S-dermatodea_contig13668.2120.1 ID=prot_S-dermatodea_contig13668.2120.1|Name=mRNA_S-dermatodea_contig13668.2120.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=229bp
STLTPTLVGVQALGVKVIEGIDVSDADSGAKLVGAVREKLGEGRTLDYVI
CNAGILTPDTFEDPKYDAAVKMYEVCVLGPLRALQSLTMAGLLREGSKVG
MITSEGGSVSLRTELEGGNNYGHHMSKCAQNMMGKLFALDVKPRGIAIVC
LHPGFMKTTMTQIYADKYEELGAIGPEEAAPGIVKAVEDLTLETTGRFIA
PQGSKSLGLGLYALDNPDDYGPFSQLPW*
back to top

mRNA from alignment at S-dermatodea_contig13668:3092..6508-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13668.2120.1 ID=mRNA_S-dermatodea_contig13668.2120.1|Name=mRNA_S-dermatodea_contig13668.2120.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3417bp|location=Sequence derived from alignment at S-dermatodea_contig13668:3092..6508- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCACCCTGACTCCGACGCTCGTCGGCGTGCAGGCGCTTGGTGTGAAAGT AATCGAAGGGATTGATGTCAGCGACGCCGACTCCGGGGCGAAGCTCGTCG GGGCGGTGCGCGAGAAGCTGGGCGAGGGCAGGACTCTCGACTACGTGATC TGCAACGCCGGGTGAGCTTATGCTAGCGCTGAGGGAAAAAACCTCGAATG GTGCATGCAGGCAGTGCCACCTTCGCGCGTTTTGTGTTTTGTTTTTACGG CTCCTGCGGATTCTCTATTTGTTGTCCTTTCGGTCCCCAATTGCGCCCGT CTTATCGTAAGATTCGTATTTCGTTTGCTTGGTAAAGGGAGGCGCAGTGT GCGCGATGGAGCTCCGGGTGGTGTTGTGTCTGCGATTGTTGGCTGTGCGG CTTCAAGCTGCTCTGTATTAGCTTGGTGGTGGGAAGTCTTGCGTACTCTA TAGAGTATCAATATAATATCTCTACAAGTATACCTTTGGTTTACGCACCC TACACGTGTACTCGTATGATACTATTACGGGGGACTATACCATAGTGAAC AGGTCCAAATTTGCCACAAGTCTCAACCTAGAAAAAATCAAAATGGGCTG GAATTACCGAGGTTTCGAGGTCGATGTTCTTGTGTTGGCCGTATCTCGTG TTGTTTAATATTTTTTCATAAGATTTTTGTTGTTTAGGTACTCATGGTCG GAATAGTTGGGTGTTCATGGTCATGGGATTTGGTCCTGATTACTTGATTA TAGTGTACCTCCGTAATAGTAGGTAGGCACGGGCTACACCACCTCAACTC TAAATCGCAGTTTGTTTTGTCCAGAATAATCAACTCTAAATCGCTATTAA AAACACGTTCATTGTTCCTTCAATTATAAGGATGTAGCGGTATGTAGATT CACAGCTCGCATAATACCGCGATACGGGTCCGTTGGCGCTTCCGAAGGCA CGCCTCCCTCGGTTGCTCTAGTGGGTTTGGAGTTGTTCAACGTCTGCCTC TACGGCAAGAAAGCTGTCCTGTTGCTAGTCTTTTGACGCTGGAGATAGTA CATCCCGTCGTGGCGTGCTCGATCTGTGAAGGGATAGCGTTGTCGTAAGC AAATTACCATCATCATAGCCGTGGCACGCGTCGTGTCATGCAGTTCGTGT CCGTCAGAATTGCCGCCGCATCCGCTATCCGCCCCCCTTCCACTTGCAAC AGGATATTAACGCCTGACACGTTCGAGGACCCGAAGTATGATGCGGCCGT CAAGATGTACGAGGTATGCTTTGACCTCAAGATAGAGCACATTGCAGATG TCCATCGAGGGGCAATGGAACCGCGACCTACACCTGTCTCGTCTTTAAGA ACGGTCAGCGGCTTGCTGGTCAAGGAAACAGTGCCCCAACAGCAAAGCCA CAACCACGCGAAGAGTCGAGAAGGGGCATGACTACAACTCAAGGACTAGA TACGCCTTTTGACAACGTGTGCGACATCTGCTCGTTCGTCGCTCTTGTGA GCACAAAGCGACGAGCCAGGTCATGAAACGAGCAGCCCCCTTGCTGTTGA GGTCCCCCTCTCCCCACCTCGTTTTTGTTTTATCGGTCACGAATCTTCCA AGTCAGTCACACAGCGATTGCTTCTTGTACTCTGTATCTGGCCGCCACGT TTTGTTGAGAAGTGGCGCGAGAGCGCTCTCGCAGGTCGACTTCCTGCCGG CGGTTTCGCAGACGCCAAGCATGCTGGGTTGCAAGACCCTGAGGTTTTTA CTTTTTCTTATTAGTAGTGTGTATTGTGAAGACGAGTAAGTACTCTATGT CAGGTGAGATTTTGTTGAAGTGGGCAAGACCGCGCCGCACATGTTGGAAA CCCCCCGCATGTTTGTGTCCGAGCAGGTACTACATCTTCCGGAATCATAT GCCCTCCATTAGTTCGGCAGTAGAAAATGGCCAACTTACAACATCAACGA CGAGCCAGGTCATGAAACGAGCAGCTCCCTTGCTCTTGAGGTCGCCCTCT CCTCAGGCCATCATTTTTGCTCGGTCACGCGTCGTGTTCTCCTACCCCAT CGCGAATCGTACCCCATAGCATCGTGTCACCAACCCCCACGTTTCCCGAA CGGTATTGCAAACTCGCCAGGTATGCGTGCTCGGACCGCTCCGGGCTCTC CAGTCCCTCACCATGGCGGGGTTGCTCCGGGAAGGATCAAAGGTTGGCAT GATCACCTCGGAGGGAGGGTCGGTCAGCCTGCGAACGGAGCTCGAGGGCG GCAACAACTACGGGTGAGACCAACGCCGTGGAGACGTCTGCGCGGGCTGC GGAGGGTGGCCGGGATGAGGGCGCGGCGCTTGTTGCCGTTACTTTAGATG GGCTTGCTATGTGAACGCCGACTGAGTAACCATCGCCATCGTCCCCATTT TTGTATGTTTTCAACCAACATGATGTTTGTGCGAAGCCACTCTCTCCCTT GCCTCATGTCTTCTGCAGGATCAATTACTCTCCATGCATGGCGGCGGAAT ATTAGCTTCTGAAGTGAAATGCTATACCGGGCCTCTTGACGACATTGTGC CTTTTGTTTTTCCCCCGTCCTTGCGCGCGGAAAATCCCAACAGGCACCAC ATGAGCAAGTGTGCGCAGAACATGATGGGCAAGCTCTTCGCCCTCGACGT GAAGCCGCGCGGCATCGCCATTGTGTGTCTGCACCCTGGCTTTATGAAGA CCACGATGACCCAGATCTACGCGGACAAGTACGAGGAGCTCGGCGCCATC GGGCCAGAAGAGGCGGCGCCGGGAATCGTGAAGGTGACCCTTGCTTTGCG AGCGCAAGACCCCGCACGTTTATGGTTGACGCGCCCGGATGCCCGATGCC CCGCCGTACTTCGCCGGCTTTGCAGCGGCGCAAATCGTGGCCGATGGTTT AATTTGGTAGAGAGATGGGGGAAAGTAACACGCAGCTTTCCTATAAAAAA CAAAAAGGAAAGGAGGCTTCTAATTGGGCAACAACTCTTGGTCGACGGGT GACGTCAACCACGGTCATGAGACGTCAGTTCTTGGACGGAGGTAAATATC ATAAGGGTGCTCCTGACTGGTCTATGATACTGGGTCGGATCGTGCGAGAT GCGTTTCGGCACTTTTGAGCTGCAGGAAGCCGCGTGTTGACGGTTAGGGG ATGCCACCGTGGAAAAACGATCGTTTGTGGTCTACATAATTATCTCGACG TGTAACCGCTGCTTTCTATATCACCTCCCTCGCGCCGCCGCCGCCACCCT GCACCACTCGAACGGGCCTTTCGGACTTTTTGCAGGCTGTGGAGGACTTA ACCCTGGAAACGACGGGCAGGTTTATCGCGCCTCAGGGAAGCAAGAGCCT GGGCCTCGGCTTGTATGCACTCGACAATCCTGACGACTACGGCCCTTTCT CCCAGCTCCCGTGGTAG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13668:3092..6508-

>mRNA_S-dermatodea_contig13668.2120.1 ID=mRNA_S-dermatodea_contig13668.2120.1|Name=mRNA_S-dermatodea_contig13668.2120.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1374bp|location=Sequence derived from alignment at S-dermatodea_contig13668:3092..6508- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCACCCTGACTCCGACGCTCGTCGGCGTGCAGGCGCTTGGTGTGAAAGT
AATCGAAGGGATTGATGTCAGCGACGCCGACTCCGGGGCGAAGCTCGTCG
GGGCGGTGCGCGAGAAGCTGGGCGAGGGCAGGACTCTCGACTACGTGATC
TGCAACGCCGGAGCACCCTGACTCCGACGCTCGTCGGCGTGCAGGCGCTT
GGTGTGAAAGTAATCGAAGGGATTGATGTCAGCGACGCCGACTCCGGGGC
GAAGCTCGTCGGGGCGGTGCGCGAGAAGCTGGGCGAGGGCAGGACTCTCG
ACTACGTGATCTGCAACGCCGGGATATTAACGCCTGACACGTTCGAGGAC
CCGAAGTATGATGCGGCCGTCAAGATGTACGAGGATATTAACGCCTGACA
CGTTCGAGGACCCGAAGTATGATGCGGCCGTCAAGATGTACGAGGTATGC
GTGCTCGGACCGCTCCGGGCTCTCCAGTCCCTCACCATGGCGGGGTTGCT
CCGGGAAGGATCAAAGGTTGGCATGATCACCTCGGAGGGAGGGTCGGTCA
GCCTGCGAACGGAGCTCGAGGGCGGCAACAACTACGGGTATGCGTGCTCG
GACCGCTCCGGGCTCTCCAGTCCCTCACCATGGCGGGGTTGCTCCGGGAA
GGATCAAAGGTTGGCATGATCACCTCGGAGGGAGGGTCGGTCAGCCTGCG
AACGGAGCTCGAGGGCGGCAACAACTACGGGCACCACATGAGCAAGTGTG
CGCAGAACATGATGGGCAAGCTCTTCGCCCTCGACGTGAAGCCGCGCGGC
ATCGCCATTGTGTGTCTGCACCCTGGCTTTATGAAGACCACGATGACCCA
GATCTACGCGGACAAGTACGAGGAGCTCGGCGCCATCGGGCCAGAAGAGG
CGGCGCCGGGAATCGTGAAGGCACCACATGAGCAAGTGTGCGCAGAACAT
GATGGGCAAGCTCTTCGCCCTCGACGTGAAGCCGCGCGGCATCGCCATTG
TGTGTCTGCACCCTGGCTTTATGAAGACCACGATGACCCAGATCTACGCG
GACAAGTACGAGGAGCTCGGCGCCATCGGGCCAGAAGAGGCGGCGCCGGG
AATCGTGAAGGCTGTGGAGGACTTAACCCTGGAAACGACGGGCAGGTTTA
TCGCGCCTCAGGGAAGCAAGAGCCTGGGCCTCGGCTTGTATGCACTCGAC
AATCCTGACGACTACGGCCCTTTCTCCCAGCTCCCGTGGTAGGCTGTGGA
GGACTTAACCCTGGAAACGACGGGCAGGTTTATCGCGCCTCAGGGAAGCA
AGAGCCTGGGCCTCGGCTTGTATGCACTCGACAATCCTGACGACTACGGC
CCTTTCTCCCAGCTCCCGTGGTAG
back to top