mRNA_S-dermatodea_contig13660.2118.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13660.2118.1
Unique NamemRNA_S-dermatodea_contig13660.2118.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13660.2118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13660contigS-dermatodea_contig13660:2060..2899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size840
Cds size609
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924293.5084054-UTR-S-dermatodea_contig13660:2059..22901622924293.5084054-UTR-S-dermatodea_contig13660:2059..2290Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13660 2060..2290 +
1694079157.046658-UTR-S-dermatodea_contig13660:2059..22901694079157.046658-UTR-S-dermatodea_contig13660:2059..2290Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13660 2060..2290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924293.5193214-CDS-S-dermatodea_contig13660:2290..28991622924293.5193214-CDS-S-dermatodea_contig13660:2290..2899Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13660 2291..2899 +
1694079157.0572677-CDS-S-dermatodea_contig13660:2290..28991694079157.0572677-CDS-S-dermatodea_contig13660:2290..2899Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13660 2291..2899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13660.2118.1prot_S-dermatodea_contig13660.2118.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13660 2291..2899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13660.2118.1

>prot_S-dermatodea_contig13660.2118.1 ID=prot_S-dermatodea_contig13660.2118.1|Name=mRNA_S-dermatodea_contig13660.2118.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=203bp
MDEASGLTDGAAEAPAVTIGAKRSREDLLSQQPPPPDTQPPQQPADPHKQ
PMATTCTQTATTAATAAASTIAHAQRTATSHIERPQCSPTRKTSCPLTSM
SDFGRPSPPGNAALPPIATAAAGPPGEDTEHLDAAQLLPVRPPPPAEATT
SSVVEQVTTAPAETRQETGRGPLPAAAITISSGLSSPSSPALAMVSGAVC
TIG
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mRNA from alignment at S-dermatodea_contig13660:2060..2899+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13660.2118.1 ID=mRNA_S-dermatodea_contig13660.2118.1|Name=mRNA_S-dermatodea_contig13660.2118.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=840bp|location=Sequence derived from alignment at S-dermatodea_contig13660:2060..2899+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCAAACAAACGCCCAACGCTCCACCAGTTATAGGCGAAGGCAGCGAGACT
AGCCACCCGAAGTACTCGTAAGCCCCCTCAGCGAGTGCTGGCATCATCGG
CGTTGATCCCAAGGGCCTGCTGACGAGGTGCCTGTCTTCCTCCTGCCCAC
CCCAATTGCTGTTTCTCCTCGCGGCACCAGCCAGCGAGCGTTGGCCGCAA
GGACCAAGATACACCCTCCGAGGCACCCGCAATGGACGAAGCTAGCGGCC
TTACGGATGGCGCAGCCGAAGCACCCGCTGTCACGATCGGAGCCAAGCGG
TCTCGAGAGGACCTCTTATCGCAGCAACCCCCCCCCCCCGACACGCAGCC
GCCACAGCAGCCTGCCGATCCCCACAAGCAACCAATGGCCACAACATGCA
CACAGACCGCAACAACAGCAGCAACAGCAGCAGCCAGCACAATCGCCCAC
GCTCAACGCACCGCCACCTCCCACATCGAGCGACCCCAGTGCTCACCCAC
GAGGAAAACCTCCTGCCCATTGACCTCGATGTCGGATTTCGGACGGCCAT
CACCCCCCGGCAACGCAGCCTTGCCGCCCATAGCAACGGCTGCTGCTGGT
CCTCCCGGAGAGGACACGGAGCATTTGGACGCGGCACAATTGTTGCCGGT
TCGCCCCCCGCCACCCGCGGAAGCCACCACCTCCAGCGTAGTGGAGCAGG
TAACCACAGCACCAGCGGAGACACGACAAGAGACAGGGCGTGGACCACTC
CCGGCTGCGGCGATCACGATTTCCAGCGGGCTTTCGAGCCCCTCCTCCCC
TGCGCTTGCGATGGTGTCAGGTGCAGTATGCACAATAGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13660:2060..2899+

>mRNA_S-dermatodea_contig13660.2118.1 ID=mRNA_S-dermatodea_contig13660.2118.1|Name=mRNA_S-dermatodea_contig13660.2118.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at S-dermatodea_contig13660:2060..2899+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGAAGCTAGCGGCCTTACGGATGGCGCAGCCGAAGCACCCGCTGT
CACGATCGGAGCCAAGCGGTCTCGAGAGGACCTCTTATCGCAGCAACCCC
CCCCCCCCGACACGCAGCCGCCACAGCAGCCTGCCGATCCCCACAAGCAA
CCAATGGCCACAACATGCACACAGACCGCAACAACAGCAGCAACAGCAGC
AGCCAGCACAATCGCCCACGCTCAACGCACCGCCACCTCCCACATCGAGC
GACCCCAGTGCTCACCCACGAGGAAAACCTCCTGCCCATTGACCTCGATG
TCGGATTTCGGACGGCCATCACCCCCCGGCAACGCAGCCTTGCCGCCCAT
AGCAACGGCTGCTGCTGGTCCTCCCGGAGAGGACACGGAGCATTTGGACG
CGGCACAATTGTTGCCGGTTCGCCCCCCGCCACCCGCGGAAGCCACCACC
TCCAGCGTAGTGGAGCAGGTAACCACAGCACCAGCGGAGACACGACAAGA
GACAGGGCGTGGACCACTCCCGGCTGCGGCGATCACGATTTCCAGCGGGC
TTTCGAGCCCCTCCTCCCCTGCGCTTGCGATGGTGTCAGGTGCAGTATGC
ACAATAGGAATGGACGAAGCTAGCGGCCTTACGGATGGCGCAGCCGAAGC
ACCCGCTGTCACGATCGGAGCCAAGCGGTCTCGAGAGGACCTCTTATCGC
AGCAACCCCCCCCCCCCGACACGCAGCCGCCACAGCAGCCTGCCGATCCC
CACAAGCAACCAATGGCCACAACATGCACACAGACCGCAACAACAGCAGC
AACAGCAGCAGCCAGCACAATCGCCCACGCTCAACGCACCGCCACCTCCC
ACATCGAGCGACCCCAGTGCTCACCCACGAGGAAAACCTCCTGCCCATTG
ACCTCGATGTCGGATTTCGGACGGCCATCACCCCCCGGCAACGCAGCCTT
GCCGCCCATAGCAACGGCTGCTGCTGGTCCTCCCGGAGAGGACACGGAGC
ATTTGGACGCGGCACAATTGTTGCCGGTTCGCCCCCCGCCACCCGCGGAA
GCCACCACCTCCAGCGTAGTGGAGCAGGTAACCACAGCACCAGCGGAGAC
ACGACAAGAGACAGGGCGTGGACCACTCCCGGCTGCGGCGATCACGATTT
CCAGCGGGCTTTCGAGCCCCTCCTCCCCTGCGCTTGCGATGGTGTCAGGT
GCAGTATGCACAATAGGA
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