mRNA_S-dermatodea_contig13648.2112.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13648.2112.1
Unique NamemRNA_S-dermatodea_contig13648.2112.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13648.2112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13648contigS-dermatodea_contig13648:4809..6638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size722
Cds size720
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13648.2112.1prot_S-dermatodea_contig13648.2112.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13648 4809..6638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924292.693803-CDS-S-dermatodea_contig13648:4808..49891622924292.693803-CDS-S-dermatodea_contig13648:4808..4989Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13648 4809..4989 +
1694079156.3000302-CDS-S-dermatodea_contig13648:4808..49891694079156.3000302-CDS-S-dermatodea_contig13648:4808..4989Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13648 4809..4989 +
1622924292.704213-CDS-S-dermatodea_contig13648:5201..53351622924292.704213-CDS-S-dermatodea_contig13648:5201..5335Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13648 5202..5335 +
1694079156.308706-CDS-S-dermatodea_contig13648:5201..53351694079156.308706-CDS-S-dermatodea_contig13648:5201..5335Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13648 5202..5335 +
1622924292.7141604-CDS-S-dermatodea_contig13648:5657..58551622924292.7141604-CDS-S-dermatodea_contig13648:5657..5855Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13648 5658..5855 +
1694079156.3176012-CDS-S-dermatodea_contig13648:5657..58551694079156.3176012-CDS-S-dermatodea_contig13648:5657..5855Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13648 5658..5855 +
1622924292.722144-CDS-S-dermatodea_contig13648:6431..66381622924292.722144-CDS-S-dermatodea_contig13648:6431..6638Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13648 6432..6638 +
1694079156.326617-CDS-S-dermatodea_contig13648:6431..66381694079156.326617-CDS-S-dermatodea_contig13648:6431..6638Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13648 6432..6638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13648.2112.1

>prot_S-dermatodea_contig13648.2112.1 ID=prot_S-dermatodea_contig13648.2112.1|Name=mRNA_S-dermatodea_contig13648.2112.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=240bp
NLERFGKPPKDFMDTKPNFICVQGQTRFALFNWAIGDDWRKGPQSSGPLD
PGHLDQFDPKGRHKMLIRQMIQGAGQIATTAFSHVSTATAQELGHAQHDA
EETSKKPATWSAIVMVRAVVTQMYDMQGFHCSEERMAETLGDNWRSVLSP
TPPDDAKPDDITDEQNRAARESISSKSGNLRSFLGLDGAMQTDPDLLASI
TADGFGSSTDRIVDELKRAMFTLNIAESVLEGHHKTISEA
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mRNA from alignment at S-dermatodea_contig13648:4809..6638+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13648.2112.1 ID=mRNA_S-dermatodea_contig13648.2112.1|Name=mRNA_S-dermatodea_contig13648.2112.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1830bp|location=Sequence derived from alignment at S-dermatodea_contig13648:4809..6638+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AATCTCGAGCGGTTCGGGAAGCCCCCGAAAGATTTCATGGACACGAAGCC
TAACTTCATCTGCGTTCAGGGTCAGACACGATTTGCTCTATTCAATTGGG
CGATTGGAGACGACTGGCGCAAAGGACCACAAAGCTCGGGGCCTCTTGAC
CCTGGCCATCTAGACCAGTTCGACCCTAAGGGTTAGTGAAATATTATATA
TAAATTCACAAAGGATTCGAGCACTTCAGGCGACACAAAACACCGGCCGA
ACCTATATACGACTCGGCTGCATATTCAGATAATACCCCAAGATTTTAAA
CATGAACGGATGGTTAAGATACACCTGGAATCCCCGGGCTATTCGGTGAT
TACGATTAACACATATACAGTATATTCGTATGTATTATTTCAGGACGACA
CAAGATGTTGATCCGCCAGATGATCCAAGGTGCTGGACAGATCGCTACGA
CGGCGTTCTCTCACGTCAGCACCGCAACTGCCCAAGAGCTCGGTCATGCC
CAGCACGACGCCGAAGAAACCTCCAAGGTAATTACACGTGTTCGGTGACA
CGTGTGCTTTACCCCGTTCGTTTGCAATTACACGTCTGCCACACGTGTAC
TCGTATTATACTGGAATAAAATTATTCAATCCCCATGTATTAATGTGGTT
TAGTACATTCCGGCCACGGTCGTTCTTCCGGATTACAGGTGCCGCACAGA
TAAAAAACACACGCCCTACACAGGCCAGGCAACGCACCACATAAATTGTA
CAACGCTACCAACAATCATAGGTCACAATCCTCACACTATTGATTTGCCC
GACCCATCTATTTTACGACTCCGCTGCTCTCACTGTTGATTACAATCAGA
AACCGGCTACGTGGTCTGCGATCGTGATGGTACGCGCTGTCGTAACACAA
ATGTACGACATGCAAGGCTTTCATTGCTCCGAGGAACGCATGGCAGAAAC
GTTAGGTGACAATTGGAGGTCCGTCCTTTCTCCAACACCGCCGGACGACG
CAAAACCTGATGATATCACCGACGAACAGAACAGGGCGGCAAGGGAGGTG
CAGAATACTCTCGTGCGCTACGTCGAAAGAGCCATGTTGCCGGTCACGTC
AAGTGACAAGTCGTCCACGATCCGCCCGTTCACTCTGCTAGTCTTCGCGA
GTGCCTTGCGAGAGCAGGTGCCCTGGGAGGCGTGACCAACGATAAAAGAT
CGGTTGGTATTTGAAGAGGAGAGCGTCCCGCTGCAAGACAAGCGGTGAAA
TGGCAGTTAGTTTTGTGAACGTGCATAGATTCACAGTACGCACTTTTATT
TGTAGTAGCCCAAAGTATAACGACTGGCCTAAAAAATAACAATCGTGCTT
CGCAAGAAACAATGCAGAACTGTGGGCGGTCGTAGGTTTCTTACAAATTG
AGGAGCAGCGTATCTCGTTATCACCAAGCGGGTACCTAACCCGCTTGAGC
GAGTGGCCTGGGTTGCTACTATATGTTGTCTAATACGCAAAAGAGACCCC
CATGTAAAGTACCTGGTCTTACCGCGTTTGCCTCGTGTCAAGAAAAGCCT
AGGAAATATCCCGCCTGTGCACTTTCTTAGTTAGCATTCGCATCCCTCGT
TTTCTTGCGATTGCAATGGGCAGAGCATTTCCTCCAAGAGTGGAAACCTC
AGGAGCTTCTTGGGCCTCGACGGTGCCATGCAAACGGATCCAGACCTCCT
TGCGTCGATAACTGCGGACGGGTTCGGCAGCTCAACTGATCGCATCGTGG
ATGAGCTCAAGCGGGCTATGTTCACATTAAACATAGCAGAGAGTGTGCTG
GAAGGGCACCACAAGACGATCTCGGAAGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13648:4809..6638+

>mRNA_S-dermatodea_contig13648.2112.1 ID=mRNA_S-dermatodea_contig13648.2112.1|Name=mRNA_S-dermatodea_contig13648.2112.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at S-dermatodea_contig13648:4809..6638+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AATCTCGAGCGGTTCGGGAAGCCCCCGAAAGATTTCATGGACACGAAGCC
TAACTTCATCTGCGTTCAGGGTCAGACACGATTTGCTCTATTCAATTGGG
CGATTGGAGACGACTGGCGCAAAGGACCACAAAGCTCGGGGCCTCTTGAC
CCTGGCCATCTAGACCAGTTCGACCCTAAGGAATCTCGAGCGGTTCGGGA
AGCCCCCGAAAGATTTCATGGACACGAAGCCTAACTTCATCTGCGTTCAG
GGTCAGACACGATTTGCTCTATTCAATTGGGCGATTGGAGACGACTGGCG
CAAAGGACCACAAAGCTCGGGGCCTCTTGACCCTGGCCATCTAGACCAGT
TCGACCCTAAGGGACGACACAAGATGTTGATCCGCCAGATGATCCAAGGT
GCTGGACAGATCGCTACGACGGCGTTCTCTCACGTCAGCACCGCAACTGC
CCAAGAGCTCGGTCATGCCCAGCACGACGCCGAAGAAACCTCCAAGGACG
ACACAAGATGTTGATCCGCCAGATGATCCAAGGTGCTGGACAGATCGCTA
CGACGGCGTTCTCTCACGTCAGCACCGCAACTGCCCAAGAGCTCGGTCAT
GCCCAGCACGACGCCGAAGAAACCTCCAAGAAACCGGCTACGTGGTCTGC
GATCGTGATGGTACGCGCTGTCGTAACACAAATGTACGACATGCAAGGCT
TTCATTGCTCCGAGGAACGCATGGCAGAAACGTTAGGTGACAATTGGAGG
TCCGTCCTTTCTCCAACACCGCCGGACGACGCAAAACCTGATGATATCAC
CGACGAACAGAACAGGGCGGCAAGGGAGAAACCGGCTACGTGGTCTGCGA
TCGTGATGGTACGCGCTGTCGTAACACAAATGTACGACATGCAAGGCTTT
CATTGCTCCGAGGAACGCATGGCAGAAACGTTAGGTGACAATTGGAGGTC
CGTCCTTTCTCCAACACCGCCGGACGACGCAAAACCTGATGATATCACCG
ACGAACAGAACAGGGCGGCAAGGGAGAGCATTTCCTCCAAGAGTGGAAAC
CTCAGGAGCTTCTTGGGCCTCGACGGTGCCATGCAAACGGATCCAGACCT
CCTTGCGTCGATAACTGCGGACGGGTTCGGCAGCTCAACTGATCGCATCG
TGGATGAGCTCAAGCGGGCTATGTTCACATTAAACATAGCAGAGAGTGTG
CTGGAAGGGCACCACAAGACGATCTCGGAAGCCAGCATTTCCTCCAAGAG
TGGAAACCTCAGGAGCTTCTTGGGCCTCGACGGTGCCATGCAAACGGATC
CAGACCTCCTTGCGTCGATAACTGCGGACGGGTTCGGCAGCTCAACTGAT
CGCATCGTGGATGAGCTCAAGCGGGCTATGTTCACATTAAACATAGCAGA
GAGTGTGCTGGAAGGGCACCACAAGACGATCTCGGAAGCC
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