mRNA_S-dermatodea_contig1363.2101.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1363.2101.1
Unique NamemRNA_S-dermatodea_contig1363.2101.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1363.2101.1 vs. uniprot
Match: D8LK44_ECTSI (ABC transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK44_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 3.450e-33
Identity = 64/77 (83.12%), Postives = 69/77 (89.61%), Query Frame = 1
Query:    1 GLFNADPHPGNILIMPEEKVGPVKRGFSLLGLRTPKASLRVGLLDWGQIKELTRQDRDKVANLIVAVSSKRSNDIVR 231
            GLFNADPHPGNILIMPEE+VGP+KRGF LLGLRTPK  LR+GLLDWGQ KEL RQDR+KVANLI+AVSS  S DIVR
Sbjct:  330 GLFNADPHPGNILIMPEEQVGPIKRGFGLLGLRTPK--LRIGLLDWGQTKELGRQDREKVANLILAVSSHASPDIVR 404          
BLAST of mRNA_S-dermatodea_contig1363.2101.1 vs. uniprot
Match: H6WB89_VAULI (ABC transporter-like protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB89_VAULI)

HSP 1 Score: 82.8 bits (203), Expect = 1.010e-16
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 GLFNADPHPGNILIMPEEKV-GPVKRGFSLLGLRTPKASLRVGLLDWGQIKELTRQDRDKVANLIVAVSSKRSNDIV 228
            GLFNAD HPGNI+IMPE +  GPV     L+GL TP  +L VGLLDWGQ+KEL    R++ A L+ A+++K+S D V
Sbjct:  464 GLFNADLHPGNIVIMPEGRAWGPVGLVLGLVGLNTP--ALSVGLLDWGQVKELDEGSRERFARLVCAIANKKSQDEV 538          
BLAST of mRNA_S-dermatodea_contig1363.2101.1 vs. uniprot
Match: A0A835Z9N8_9STRA (ABC transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9N8_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.060e-14
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 GLFNADPHPGNILIMPEEKV-GPVKRGFSLLGLRTPKASLRVGLLDWGQIKELTRQDRDKVANLIVAVSSKRSND 222
            GLFNAD HPGNI+IMPE +  G       LLGL TPK  LRVGLLDWGQ+KEL    R + A L++A+S  +  +
Sbjct:  314 GLFNADLHPGNIVIMPEGRAWGLTGLVLGLLGLNTPK--LRVGLLDWGQVKELDVDSRTRFARLVIAISDGKGRE 386          
BLAST of mRNA_S-dermatodea_contig1363.2101.1 vs. uniprot
Match: B8CBS2_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBS2_THAPS)

HSP 1 Score: 65.1 bits (157), Expect = 1.720e-10
Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    1 GLFNADPHPGNILIMPEEKVGPVKRGFSLLGLRTPKASLRVGLLDWGQIKELTRQDRDKVANLIVAVSSKRSNDIV 228
            GLFNAD HPGNIL++ +E                PK + ++GL+D+GQ K LT+++R K+A LIV+++ K S++++
Sbjct:  466 GLFNADCHPGNILVVLDEN--------------NPKQNPKLGLIDYGQCKRLTKEERVKIAKLIVSIADKESDEVI 527          
BLAST of mRNA_S-dermatodea_contig1363.2101.1 vs. uniprot
Match: A0A7S3Q7C7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q7C7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.530e-9
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    1 GLFNADPHPGNILIMPEEKVGPVKRGFSLLGLRTPKASLRVGLLDWGQIKELTRQDRDKVANLIVAVSSKRSNDIV 228
            GLFNADPHPGNIL++ E      K   S L  R  K++  VGL+D+GQ K+LT +++ KVA LI++V++  S++ +
Sbjct:  495 GLFNADPHPGNILVVEE------KDEKSSLKRRRKKSA--VGLIDYGQCKKLTEEEQLKVARLILSVANNESDEAI 562          
BLAST of mRNA_S-dermatodea_contig1363.2101.1 vs. uniprot
Match: A0A7S2C479_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C479_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.650e-9
Identity = 29/69 (42.03%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 GLFNADPHPGNILIMPEEKVGPVKRGFSLLGLRTPKASLRVGLLDWGQIKELTRQDRDKVANLIVAVSS 207
            GLFN+DPHPGNIL++ +E+ G              K+S R+GL+D+GQ K+LT +++ K+A L+++V++
Sbjct:  133 GLFNSDPHPGNILVVEKEEDGK-------------KSSRRLGLIDYGQCKQLTPEEQYKIARLVLSVAN 188          
BLAST of mRNA_S-dermatodea_contig1363.2101.1 vs. uniprot
Match: A0A7S4D6K6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6K6_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 2.450e-8
Identity = 34/78 (43.59%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 GLFNADPHPGNILIMPEEKVGPVKRGFSLLGLRTPKASLRVGLLDWGQIKELTRQDRDKVANLIVAVSSKRSN-DIVR 231
            G+FNADPHPGN+L+    + GP   G            L VGLLDWGQ KEL  +   ++A+L+ A+S K +  DIV+
Sbjct:  204 GVFNADPHPGNLLL---RRAGPASGG------------LAVGLLDWGQTKELGEEATARLAHLVKALSQKENKEDIVQ 266          
BLAST of mRNA_S-dermatodea_contig1363.2101.1 vs. uniprot
Match: A0A7S2U7H6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7H6_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.440e-8
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    1 GLFNADPHPGNILIMPEEKVGPVKRGFSLLGLRTPKASLRVGLLDWGQIKELTRQDRDKVANLIVAVSSKRSN 219
            GLFNADPHPGNIL++ E    P               S ++GL+D+GQ K LT Q++ KVA L+++V+   S+
Sbjct:  342 GLFNADPHPGNILVINENDARP---------------STKLGLIDFGQCKRLTPQEQVKVARLLLSVAHNESD 399          
BLAST of mRNA_S-dermatodea_contig1363.2101.1 vs. uniprot
Match: A0A1Y2H4Q2_9FUNG (ABC1 family-domain-containing protein n=1 Tax=Catenaria anguillulae PL171 TaxID=765915 RepID=A0A1Y2H4Q2_9FUNG)

HSP 1 Score: 57.8 bits (138), Expect = 6.500e-8
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    1 GLFNADPHPGNILIMPEEKVG-PVKRGFSLLGLRTPKASLRVGLLDWGQIKELTRQDRDKVANLIVAVSSKRSNDIVR 231
            GLFN DPHPGNIL+   ++ G PV                 +GL+D+GQ+K+LT + R  +A ++VAV+ K    IVR
Sbjct:  449 GLFNGDPHPGNILLSHSQRDGSPV-----------------LGLIDYGQVKQLTDEQRRSIARMVVAVAEKDRAQIVR 509          
BLAST of mRNA_S-dermatodea_contig1363.2101.1 vs. uniprot
Match: A0A7S3R802_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R802_DUNTE)

HSP 1 Score: 56.6 bits (135), Expect = 1.680e-7
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 1
Query:    1 GLFNADPHPGNILIMPEEKVGPVKRGFSLLGLRTPKASLRVGLLDWGQIKELTRQDRDKVANLIVAVSSKRSNDIVR 231
            G+F+ DPHPGN++  P+   G                 +RV +LDWGQ+K+LT  +R + A L+VA++S R  D++R
Sbjct:  459 GIFHTDPHPGNLMATPDPAGG----------------GIRVAILDWGQMKQLTHNERVRYALLVVAMAS-RDGDLLR 518          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1363.2101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LK44_ECTSI3.450e-3383.12ABC transporter-like protein n=1 Tax=Ectocarpus si... [more]
H6WB89_VAULI1.010e-1655.84ABC transporter-like protein n=1 Tax=Vaucheria lit... [more]
A0A835Z9N8_9STRA1.060e-1454.67ABC transporter-like protein n=1 Tax=Tribonema min... [more]
B8CBS2_THAPS1.720e-1040.79Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S3Q7C7_9STRA1.530e-946.05Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2C479_9STRA5.650e-942.03Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4D6K6_HETAK2.450e-843.59Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2U7H6_9STRA3.440e-842.47Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1Y2H4Q2_9FUNG6.500e-841.03ABC1 family-domain-containing protein n=1 Tax=Cate... [more]
A0A7S3R802_DUNTE1.680e-737.66Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1363contigS-dermatodea_contig1363:20285..21134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue7.3e-28
Seed eggNOG ortholog2880.D8LK44
KEGG koko:K01177,ko:K08869
KEGG ReactionR02112,R11262
KEGG Pathwayko00500,map00500
EggNOG free text desc.regulation of tocopherol cyclase activity
EggNOG OGsCOG0661@1,KOG1235@2759
EC3.2.1.2
COG Functional cat.E
CAZyGH14
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924292.0732746-CDS-S-dermatodea_contig1363:20284..203981622924292.0732746-CDS-S-dermatodea_contig1363:20284..20398Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1363 20285..20398 +
1694079155.9416056-CDS-S-dermatodea_contig1363:20284..203981694079155.9416056-CDS-S-dermatodea_contig1363:20284..20398Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1363 20285..20398 +
1622924292.0865521-CDS-S-dermatodea_contig1363:21011..211341622924292.0865521-CDS-S-dermatodea_contig1363:21011..21134Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1363 21012..21134 +
1694079155.9557862-CDS-S-dermatodea_contig1363:21011..211341694079155.9557862-CDS-S-dermatodea_contig1363:21011..21134Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1363 21012..21134 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1363.2101.1prot_S-dermatodea_contig1363.2101.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1363 20285..21134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1363.2101.1

>prot_S-dermatodea_contig1363.2101.1 ID=prot_S-dermatodea_contig1363.2101.1|Name=mRNA_S-dermatodea_contig1363.2101.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=79bp
GLFNADPHPGNILIMPEEKVGPVKRGFSLLGLRTPKASLRVGLLDWGQIK
ELTRQDRDKVANLIVAVSSKRSNDIVRW*
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mRNA from alignment at S-dermatodea_contig1363:20285..21134+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1363.2101.1 ID=mRNA_S-dermatodea_contig1363.2101.1|Name=mRNA_S-dermatodea_contig1363.2101.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=850bp|location=Sequence derived from alignment at S-dermatodea_contig1363:20285..21134+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCTGTTCAATGCGGATCCTCACCCGGGGAACATCCTCATCATGCCCGA GGAGAAAGTGGGACCTGTCAAGCGCGGCTTCAGCTTGCTGGGCCTTCGAA CACCCAAGGCGAGCGTGGCGCGTGGTGTAGGTTGCGTGTGTTATTTTGTT GTTTCTTCATCATTTTGCTCCGCAGACTTTACGGTTGCTGGTTTGATTGA TTGATTGATTGATTGATTGATTTATTTATTTATTATCACACTTACAACCG ACCGGCCCACCAATGGTTGCCGATCCCGCTCGTGGTCGGATGAAAAAAAA TCGAGAGATCGAGAAAAAACTACCCTACGGGATTTACCTATATACTCATA CAAAGACATAATTGACATACAAATAACTCTCGGAAACAGAAGGGGCATAG CTCGGAACTTGGCGTTTTTTGGCGTTGCTGTTGTTGTCCTCCCGGAACGA GTTATTATTCCCCGTACGGTTACCCCTTGACCCCGCCCCTTCCACCCCGG CTCTGCTTGGCGATGAAAACCGACCGGCGGCGCTTGTTGTGTTTGTTGGC GTGTTGCTCCCGGGTGTCACTCGACGGGCCGAAAATTGACCGTAACGGCG CGTAATGTTTTCTGCTGTTTTTTTACATTTACATGTGGTGTTGCTGTCCT CCCCATTGATGTACGTTTGTATCGCTCGTGACGTGCCCCACGCTACTGTG CTGTCGCCTGCGTGTTTTTTTGGTCAGCTGCGAGTAGGGCTGCTAGACTG GGGGCAGATCAAGGAGCTCACCCGGCAAGACCGAGACAAGGTGGCAAACC TAATCGTGGCGGTCAGCTCCAAACGCAGCAACGACATCGTAAGATGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1363:20285..21134+

>mRNA_S-dermatodea_contig1363.2101.1 ID=mRNA_S-dermatodea_contig1363.2101.1|Name=mRNA_S-dermatodea_contig1363.2101.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at S-dermatodea_contig1363:20285..21134+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCCTGTTCAATGCGGATCCTCACCCGGGGAACATCCTCATCATGCCCGA
GGAGAAAGTGGGACCTGTCAAGCGCGGCTTCAGCTTGCTGGGCCTTCGAA
CACCCAAGGCGAGCGGCCTGTTCAATGCGGATCCTCACCCGGGGAACATC
CTCATCATGCCCGAGGAGAAAGTGGGACCTGTCAAGCGCGGCTTCAGCTT
GCTGGGCCTTCGAACACCCAAGGCGAGCCTGCGAGTAGGGCTGCTAGACT
GGGGGCAGATCAAGGAGCTCACCCGGCAAGACCGAGACAAGGTGGCAAAC
CTAATCGTGGCGGTCAGCTCCAAACGCAGCAACGACATCGTAAGATGGTG
ACTGCGAGTAGGGCTGCTAGACTGGGGGCAGATCAAGGAGCTCACCCGGC
AAGACCGAGACAAGGTGGCAAACCTAATCGTGGCGGTCAGCTCCAAACGC
AGCAACGACATCGTAAGATGGTGA
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