mRNA_S-dermatodea_contig13617.2095.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13617.2095.1
Unique NamemRNA_S-dermatodea_contig13617.2095.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13617.2095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13617contigS-dermatodea_contig13617:6212..6581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size372
Cds size147
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924291.5694118-CDS-S-dermatodea_contig13617:6211..63581622924291.5694118-CDS-S-dermatodea_contig13617:6211..6358Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13617 6212..6358 +
1694079155.5452168-CDS-S-dermatodea_contig13617:6211..63581694079155.5452168-CDS-S-dermatodea_contig13617:6211..6358Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13617 6212..6358 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924291.5784063-UTR-S-dermatodea_contig13617:6358..65811622924291.5784063-UTR-S-dermatodea_contig13617:6358..6581Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13617 6359..6581 +
1694079155.5567076-UTR-S-dermatodea_contig13617:6358..65811694079155.5567076-UTR-S-dermatodea_contig13617:6358..6581Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13617 6359..6581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13617.2095.1prot_S-dermatodea_contig13617.2095.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13617 6212..6358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13617.2095.1

>prot_S-dermatodea_contig13617.2095.1 ID=prot_S-dermatodea_contig13617.2095.1|Name=mRNA_S-dermatodea_contig13617.2095.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=49bp
ARERFASGAVICEYTGRELRTADALRQIHHWGGVADCNSLIGVRRVCT*
back to top

mRNA from alignment at S-dermatodea_contig13617:6212..6581+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13617.2095.1 ID=mRNA_S-dermatodea_contig13617.2095.1|Name=mRNA_S-dermatodea_contig13617.2095.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=370bp|location=Sequence derived from alignment at S-dermatodea_contig13617:6212..6581+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCCGTGAGCGGTTCGCCTCCGGCGCCGTGATTTGCGAGTACACCGGTCG
GGAATTACGGACGGCTGATGCTCTCAGGCAAATACACCACTGGGGGGGGG
TGGCAGATTGCAACTCTCTTATAGGCGTGCGACGTGTTTGCACATGATCT
TGGTTGTAGATATGGTACGTAAATGCAGTGCAAGGGTTAGGGAGAGGCAC
TCGCGGTTGATATCGCGCTAGGGCTATAGACGGCAGATGTGAAGTCTTTC
TCAAGGCCGTTCAAAAGCCATAACAGGTACATTCCAGGGATCCACAATAG
TGTATTCCCGTGAGATCGCCTCGGCAACCTACCAAATACTTTTGCAGCAG
CAGCGTCCTGGGTAGTACTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13617:6212..6581+

>mRNA_S-dermatodea_contig13617.2095.1 ID=mRNA_S-dermatodea_contig13617.2095.1|Name=mRNA_S-dermatodea_contig13617.2095.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at S-dermatodea_contig13617:6212..6581+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCCGTGAGCGGTTCGCCTCCGGCGCCGTGATTTGCGAGTACACCGGTCG
GGAATTACGGACGGCTGATGCTCTCAGGCAAATACACCACTGGGGGGGGG
TGGCAGATTGCAACTCTCTTATAGGCGTGCGACGTGTTTGCACATGAGCC
CGTGAGCGGTTCGCCTCCGGCGCCGTGATTTGCGAGTACACCGGTCGGGA
ATTACGGACGGCTGATGCTCTCAGGCAAATACACCACTGGGGGGGGGTGG
CAGATTGCAACTCTCTTATAGGCGTGCGACGTGTTTGCACATGA
back to top