mRNA_S-dermatodea_contig13617.2094.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13617.2094.1
Unique NamemRNA_S-dermatodea_contig13617.2094.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig13617.2094.1 vs. uniprot
Match: D7G0I7_ECTSI (PhyA2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0I7_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.810e-50
Identity = 78/96 (81.25%), Postives = 89/96 (92.71%), Query Frame = 1 
Query:   10 LLIDTCSARTPDFLVVVSRHGVRRQFPSGTHDFAKYAPGKVFETTDEEWGVDGSMGVLTQHGYDAAHLMGKYQGQKYAVDGLPLTSCSEMFVYCEE 297
            +++ +CS+RTPD L+VVSRHGVRRQFPS THDF+KYAPGK FET D++WGVDGSMGVLTQHGYDAAHLMGK+QGQKYA DGLPL SCS+MFVYCEE
Sbjct:   26 MMVTSCSSRTPDGLIVVSRHGVRRQFPSSTHDFSKYAPGKTFETEDKDWGVDGSMGVLTQHGYDAAHLMGKFQGQKYAGDGLPLDSCSDMFVYCEE 121
[Close]
BLAST of mRNA_S-dermatodea_contig13617.2094.1 vs. uniprot
Match: A0A7S3SNT0_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3SNT0_EMIHU)

HSP 1 Score: 97.1 bits (240), Expect = 6.650e-24
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:   40 PDFLVVVSRHGVRRQFPSGTHDFAKYAPGKVFETTDEEWGVDGS-MGVLTQHGYDAAHLMGKYQGQKYA-----VDGLPLTSCSE--MFVYCEE 297
            PD  ++VSRHGVRRQFPS   +F+ YAPGK F+T+DE WG  G  MGVLTQHGY A   MG YQ  +YA      DG     C++   FVYCEE
Sbjct:   23 PDRAIIVSRHGVRRQFPSSAFNFSLYAPGKHFDTSDEAWGAGGEGMGVLTQHGYAAVQRMGAYQSGRYASLLSAADG----GCADGAAFVYCEE 112
[Close]
BLAST of mRNA_S-dermatodea_contig13617.2094.1 vs. uniprot
Match: R1FLM4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FLM4_EMIHU)

HSP 1 Score: 98.6 bits (244), Expect = 6.640e-22
Identity = 53/98 (54.08%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:   28 SARTPDFLVVVSRHGVRRQFPSGTHDFAKYAPGKVFETTDEEWGVDGS-MGVLTQHGYDAAHLMGKYQGQKYA-----VDGLPLTSCSE--MFVYCEE 297
            +A  PD  ++VSRHGVRRQFPS   +F+ YAPGK F+T+DE WG  G  MGVLTQHGY A   MG YQ  +YA      DG     C++   FVYCEE
Sbjct:   16 AAAVPDRAIIVSRHGVRRQFPSSAFNFSLYAPGKHFDTSDEAWGAGGEGMGVLTQHGYAAVQRMGAYQSGRYASLLSAADG----GCADGAAFVYCEE 109
[Close]
BLAST of mRNA_S-dermatodea_contig13617.2094.1 vs. uniprot
Match: R1DX28_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DX28_EMIHU)

HSP 1 Score: 97.1 bits (240), Expect = 1.900e-21
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:   40 PDFLVVVSRHGVRRQFPSGTHDFAKYAPGKVFETTDEEWGVDGS-MGVLTQHGYDAAHLMGKYQGQKYA-----VDGLPLTSCSE--MFVYCEE 297
            PD  ++VSRHGVRRQFPS   +F+ YAPGK F+T+DE WG  G  MGVLTQHGY A   MG YQ  +YA      DG     C++   FVYCEE
Sbjct:   15 PDRAIIVSRHGVRRQFPSSAFNFSLYAPGKHFDTSDEAWGAGGEGMGVLTQHGYAAVQRMGAYQSGRYASLLSAADG----GCADGAAFVYCEE 104
[Close]
BLAST of mRNA_S-dermatodea_contig13617.2094.1 vs. uniprot
Match: A0A7S0ECG0_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ECG0_9EUKA)

HSP 1 Score: 94.7 bits (234), Expect = 1.550e-20
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   43 DFLVVVSRHGVRRQFPSGTHDFAKYAPGKVFETTDEEWGVDGS-------MGVLTQHGYDAAHLMGKYQGQKYAVDGLPLTSCSEMFVYCEE 297
            D ++++SRHGVRRQFPS   +F+ YAPGK F+T+DE WG  G        MGVLTQHGY A   MG YQ Q+Y      +  C   +VYCEE
Sbjct:   33 DRVIIISRHGVRRQFPSAAFNFSLYAPGKDFDTSDESWGAAGGEHGSKAEMGVLTQHGYAAVERMGAYQSQRYKS---LVPGCRGAYVYCEE 121
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13617.2094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G0I7_ECTSI1.810e-5081.25PhyA2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 Re... [more]
A0A7S3SNT0_EMIHU6.650e-2455.32Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
R1FLM4_EMIHU6.640e-2254.08Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1DX28_EMIHU1.900e-2155.32Uncharacterized protein (Fragment) n=1 Tax=Emilian... [more]
A0A7S0ECG0_9EUKA1.550e-2051.09Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13617contigS-dermatodea_contig13617:2491..5152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue8.9e-42
Seed eggNOG ortholog2880.D7G0I7
EggNOG OGs28MDD@1,2QTWT@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size311
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924291.529481-CDS-S-dermatodea_contig13617:2490..26491622924291.529481-CDS-S-dermatodea_contig13617:2490..2649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13617 2491..2649 -
1694079155.5178297-CDS-S-dermatodea_contig13617:2490..26491694079155.5178297-CDS-S-dermatodea_contig13617:2490..2649Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13617 2491..2649 -
1622924291.5402489-CDS-S-dermatodea_contig13617:5002..51521622924291.5402489-CDS-S-dermatodea_contig13617:5002..5152Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13617 5003..5152 -
1694079155.5318549-CDS-S-dermatodea_contig13617:5002..51521694079155.5318549-CDS-S-dermatodea_contig13617:5002..5152Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13617 5003..5152 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13617.2094.1prot_S-dermatodea_contig13617.2094.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13617 2491..5152 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13617.2094.1

>prot_S-dermatodea_contig13617.2094.1 ID=prot_S-dermatodea_contig13617.2094.1|Name=mRNA_S-dermatodea_contig13617.2094.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=103bp
SVTLLIDTCSARTPDFLVVVSRHGVRRQFPSGTHDFAKYAPGKVFETTDE
EWGVDGSMGVLTQHGYDAAHLMGKYQGQKYAVDGLPLTSCSEMFVYCEEA
SL*
back to top

mRNA from alignment at S-dermatodea_contig13617:2491..5152-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13617.2094.1 ID=mRNA_S-dermatodea_contig13617.2094.1|Name=mRNA_S-dermatodea_contig13617.2094.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2662bp|location=Sequence derived from alignment at S-dermatodea_contig13617:2491..5152- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGGTTACGCTGCTGATAGATACCTGCTCGGCAAGGACGCCAGATTTCCT
CGTCGTGGTGTCTCGGCACGGAGTGCGCAGGCAGTTTCCCAGCGGGACCC
ACGACTTCGCCAAGTACGCGCCGGGGAAGGTTTTCGAGACGACTGACGAG
GTGTGTTTTGTCGCCTTGACATCCCAACGTGGCGTGCGTGATCTCTTTGG
GCCCATTCCAGCCTGTCCCCGGCAAGGCAACATATTCCCGCGCTAGGTTT
TCTCTTTGGCTTTGGCTACACATGTCAAATGTTCTTGTTCATTTCCGAGA
GAGTTTTGTCGCTTTTGCTCCGCCTGCGCATACTATGTACTCTGCTGTGT
AGGCCCTATGATACAGGATAATGTACTCCGTCTCAATTACTTGTCAAGAT
AGAACTTGTCTATGATCATATGTGTAGAACACATGGCTTGGCGGAATGCG
TTGGCATCCTTGAATGCGGTAGTCAGGAACCTGCACTCCCTTCCCTGTTT
CACAACTCAAACGGGGCGGCAATGTATTTTGTTTGAAGACTTCCCTTCCA
GTTGACTTCCGGACACAAGTATCATACATATGATAGAGCTATCTTTTACA
TATCATACACCAGTGATCTATGATCTGATCTGATTCTTGTAGAGAGAGTG
CCTCCTTCCAATAATGACAATGGTATTGTGCCGAAATTTGTTTGTCGGAA
ATTCCTCACTGGCGACACCCGACGCCACACACGTGCCACCGACGTCGATG
TCCACTACAACAGTTGTCCACCATGTCCACCATGATGAATTGCGGAAGTT
TTAATTTTTTAACCCGGTCTGTTGTGGTTTGTGGCAGAGCAATGGGATTC
ATGATGTGTGCTACTCTAGTATGATGTGATACAGCAGCCGTTGATCGGCG
TAAAGTCTTAGTCTTCATTCACCCTCGTATTCACCCTTGCGTCGTACTAT
TACTATGATACTGTAGTTGTGTAGTTGTAGTTGTAGTTGTAGTCACGTAC
GGTAGGTAGGTACTTCGAAAGCCGCTGCTGCCACAACAGATAGTACGAAT
ATTCTTTGTCGAGCGTGTCTCTCACGTCCGTCGCCCAGCGCCGCCCGCCG
CGTTCGCGTTCGACCGCCGCCGCTAGTATTACTGCTGCAAGTTGTGTACT
TCTGCTGCAACACTGCAACAGATTTCATATCTATAGCAATGATTTATTTC
GTTTGTCACAGACCCACGCACCGATTTTGTAGACCAGTACTTCGTATATT
AATACAGTAGCTCGATAATAGACGAAAGTATATACATGCCTGGTACTTCG
CAGACTTACGGTAACGGGCTTGCTATTATAGTGTCTGTATAAGATACTGC
TATAACATACTGCTGTACAAGGTCTGCTTGTAATAGTTCATGCATTACCC
ACCATTATTCCACCACCGACGTCTTGATCGATCTATATTACTGTACGCAA
AACCGGCGGCAGGCGGCAAAGTACGCGTTGCTCGCAAAACAACAACTTCA
ACGACGAGTTTCGGCATGACAGTACAAACAGTATTATATACTGGTATCAT
AGGATGCGAAGATCTCCCCGCCGCGTCTTGACAATCGCGGACCAGTATAA
TACTACTGTTGTATAAGGCCAAACCTCAGAGCTCAAAGGTGATTTTGACC
CGACGGCAAGAAAGGGGGGGCATATTCGCCACTTTTATTATACTATATAC
TATATACTATATACTATATATACTACAGCTGTACCATTGTAAAGAGCGAA
GTTGCTCGCCCTGCCCTGTGCGGTACTGCATTGAGTACAGTATTGATGGA
TGCACGCAGCTGGCCTCACCTTACATGCACGCGTATGCATACTTGCACTT
GTACACAGTATATGTACTGTACTGTTTGTCTGTACATACATGAAGCTTTA
TTTCAAGTATACGAAGACGTGCACACACGCGCAGATATTCCAACTCCAAC
CCAGCAGGCGATTGCCTCCAGCAGAGAAATATGTGTATGAGCTATACTAC
ACTGTAGAAGAGCTCGAAGAAAAACGGTATGTAGCAGCCACAACCTTTCG
ATGTGTTTTTGAGTCGACAGAGCGCTGGCCTCGCAAGCCACCCAAATGTA
CCACAACAACTACTGTACCCACTACAACAACTGTAGTACATTTTACTTAT
TATGTCGTCCTTCGAATTACGCAGCACCAGCGAGGATTGCATTCGAGCTA
TTACTATATATACAAGTATGATGAGGATTGCATTCGAGCTATTACTATTA
TACAAGTATGATACACAACAGCAGTATTAAAGGTCTGTTGAACGTTAAAG
GACACGTGGACGCCGACGATCATGCCATGCGCAATGAACTTCGCATTCAT
ACAAATACCTACTATAATATTTTGGTGCGTGTTCGATACCGTCATGCATG
CGTCCAGACCGAAATGACTTTCCGTCCGTGAAACAAGACACGTTTCGCTC
GCTTCAACGCTGCGCCCTTGCCCCTCCATGCCTCGTGTTGCTGCCCTCCT
CAGGAATGGGGCGTGGACGGCTCCATGGGGGTACTGACCCAGCACGGCTA
CGACGCGGCGCACCTGATGGGCAAGTATCAGGGCCAGAAGTACGCCGTGG
ACGGACTGCCTCTGACTTCGTGCTCCGAGATGTTCGTGTACTGCGAGGAG
GCGAGTCTTTGA
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13617:2491..5152-

>mRNA_S-dermatodea_contig13617.2094.1 ID=mRNA_S-dermatodea_contig13617.2094.1|Name=mRNA_S-dermatodea_contig13617.2094.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at S-dermatodea_contig13617:2491..5152- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGGTTACGCTGCTGATAGATACCTGCTCGGCAAGGACGCCAGATTTCCT
CGTCGTGGTGTCTCGGCACGGAGTGCGCAGGCAGTTTCCCAGCGGGACCC
ACGACTTCGCCAAGTACGCGCCGGGGAAGGTTTTCGAGACGACTGACGAG
TCGGTTACGCTGCTGATAGATACCTGCTCGGCAAGGACGCCAGATTTCCT
CGTCGTGGTGTCTCGGCACGGAGTGCGCAGGCAGTTTCCCAGCGGGACCC
ACGACTTCGCCAAGTACGCGCCGGGGAAGGTTTTCGAGACGACTGACGAG
GAATGGGGCGTGGACGGCTCCATGGGGGTACTGACCCAGCACGGCTACGA
CGCGGCGCACCTGATGGGCAAGTATCAGGGCCAGAAGTACGCCGTGGACG
GACTGCCTCTGACTTCGTGCTCCGAGATGTTCGTGTACTGCGAGGAGGCG
AGTCTTTGAGAATGGGGCGTGGACGGCTCCATGGGGGTACTGACCCAGCA
CGGCTACGACGCGGCGCACCTGATGGGCAAGTATCAGGGCCAGAAGTACG
CCGTGGACGGACTGCCTCTGACTTCGTGCTCCGAGATGTTCGTGTACTGC
GAGGAGGCGAGTCTTTGA
back to top