mRNA_S-dermatodea_contig13599.2083.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13599.2083.1
Unique NamemRNA_S-dermatodea_contig13599.2083.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13599.2083.1 vs. uniprot
Match: A0A6H5JQN4_9PHAE (Lon N-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQN4_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 1.100e-48
Identity = 81/106 (76.42%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:   46 QLCVFMVEDFVFPGMTRRFRIFEPRYRALVKRCLGEAEPLLILPLARGGNTVGTAAYVSGLHNVEEDGRCEIEITGISRCNVKTMWMKGESFGLHEAVVEYFGDDK 363
            QL VF V++ VFPGMT+RFRIFEPRYRALVK+CL E EPL ILPL+RGGNTV T A VSGL+NVE DGRCE+E+TGI+RC+VKTMWMKGESFGL EA VE FGD++
Sbjct:   34 QLGVFKVDEVVFPGMTKRFRIFEPRYRALVKQCLAEDEPLAILPLSRGGNTVATTARVSGLYNVEADGRCEVEMTGIARCSVKTMWMKGESFGLFEAEVELFGDEQ 139
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BLAST of mRNA_S-dermatodea_contig13599.2083.1 vs. uniprot
Match: D7G2L9_ECTSI (Peptidase S16 lon domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2L9_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.480e-48
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 1 
Query:   46 QLCVFMVEDFVFPGMTRRFRIFEPRYRALVKRCLGEAEPLLILPLARGGNTVGTAAYVSGLHNVEEDGRCEIEITGISRCNVKTMWMKGESFGLHEAVVEYFGDDK 363
            QL VF V++ VFPGMT+RFRIFEPRYRALVK+CL E EPL ILPL+RGGNTV T A VSGLHNVE DGRCE+EITGI+RC+VKTMWMKGESFGL EAVVE FGD++
Sbjct:  369 QLGVFKVDEVVFPGMTKRFRIFEPRYRALVKQCLAEDEPLAILPLSRGGNTVATTARVSGLHNVEADGRCEVEITGIARCSVKTMWMKGESFGLFEAVVELFGDEQ 474
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BLAST of mRNA_S-dermatodea_contig13599.2083.1 vs. uniprot
Match: A0A5B8MTA4_9CHLO (Lon N-terminal domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MTA4_9CHLO)

HSP 1 Score: 63.9 bits (154), Expect = 2.560e-8
Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:   76 VFPGMTRRFRIFEPRYRALVKRCLGEAEPLLILPLARGGN----TVGTAAYVSGLHNVEEDGRCEIEITGISR------CNVKTMWMKGESFGLHEAVVEYFGDDKQD 369
            ++P    + RIFEPRY+A+VK+C+   E    +P     N    T+GT AYV  + ++  DG   I I G+ R      C+++T   +  SFGL+ A +++F D   D
Sbjct:  312 LYPATEMQLRIFEPRYKAMVKQCVENKEVFGFIPKDDKNNKFVDTIGTIAYVKEIIDMSPDGESTIVIKGLRRFKFKKGCSLRT---QPGSFGLNYADIQFFDDTSDD 416
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BLAST of mRNA_S-dermatodea_contig13599.2083.1 vs. uniprot
Match: A0A4D9CXP4_9STRA (Lon N-terminal domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXP4_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.730e-8
Identity = 35/110 (31.82%), Postives = 63/110 (57.27%), Query Frame = 1 
Query:   34 SERQQLCVFMVEDFVFPGMTRRFRIFEPRYRALVKRCLGEAEPLLILPLARGGNTVGTAAYVSGLHNVEED-GRCEIEITGISRCNVKTMWMKGESFGLHEAVVEYFGDD 360
            ++ + L +F ++  +FPG +   ++FEPRYR +VK+CL   EP     L    ++VGT A ++ ++ +EE+ G   + ++G  R  V++  +  +SFGL  A    F D+
Sbjct:  346 TQARDLPLFRLQSVLFPGCSLILKVFEPRYRRMVKQCLERNEPF---GLVHAQDSVGTLASITEVYRLEEETGVSILRVSGTRRFQVESSSLAEDSFGLLTATRARFFDE 452
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BLAST of mRNA_S-dermatodea_contig13599.2083.1 vs. uniprot
Match: A0A1A3QS63_9MYCO (ATP-dependent protease n=1 Tax=Mycobacterium sp. 1081908.1 TaxID=1834066 RepID=A0A1A3QS63_9MYCO)

HSP 1 Score: 52.8 bits (125), Expect = 6.910e-5
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 1 
Query:   37 ERQQLCVFMVEDFVFPGMTRRFRIFEPRYRALVKRCLGEAEPLLILPLARGGNTVGTAAY--VSGLHNVEE 243
            ER +  +F +E  + PG     RIFEPRY ALV+RCL  AEP  ++ +A+G    G  A   V  L  +EE
Sbjct:    5 ERVERAMFPLESALLPGQELPLRIFEPRYAALVRRCLAGAEPFGVVLIAQGREVGGGDARCDVGVLSRIEE 75
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13599.2083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JQN4_9PHAE1.100e-4876.42Lon N-terminal domain-containing protein n=1 Tax=E... [more]
D7G2L9_ECTSI1.480e-4879.25Peptidase S16 lon domain protein n=1 Tax=Ectocarpu... [more]
A0A5B8MTA4_9CHLO2.560e-834.26Lon N-terminal domain-containing protein n=1 Tax=C... [more]
A0A4D9CXP4_9STRA2.730e-831.82Lon N-terminal domain-containing protein n=1 Tax=N... [more]
A0A1A3QS63_9MYCO6.910e-542.25ATP-dependent protease n=1 Tax=Mycobacterium sp. 1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13599contigS-dermatodea_contig13599:1308..4268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size659
Cds size657
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924290.510112-CDS-S-dermatodea_contig13599:1307..15581622924290.510112-CDS-S-dermatodea_contig13599:1307..1558Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13599 1308..1558 +
1694079154.6848633-CDS-S-dermatodea_contig13599:1307..15581694079154.6848633-CDS-S-dermatodea_contig13599:1307..1558Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13599 1308..1558 +
1622924290.5208669-CDS-S-dermatodea_contig13599:3862..42681622924290.5208669-CDS-S-dermatodea_contig13599:3862..4268Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13599 3863..4268 +
1694079154.6976652-CDS-S-dermatodea_contig13599:3862..42681694079154.6976652-CDS-S-dermatodea_contig13599:3862..4268Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13599 3863..4268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13599.2083.1prot_S-dermatodea_contig13599.2083.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13599 1308..4268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13599.2083.1

>prot_S-dermatodea_contig13599.2083.1 ID=prot_S-dermatodea_contig13599.2083.1|Name=mRNA_S-dermatodea_contig13599.2083.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=219bp
QQQRVAISSVLSERQQLCVFMVEDFVFPGMTRRFRIFEPRYRALVKRCLG
EAEPLLILPLARGGNTVGTAAYVSGLHNVEEDGRCEIEITGISRCNVKTM
WMKGESFGLHEAVVEYFGDDKQDEHDNHNDRSAAAPAAAAAVATNAVDGA
ERNHPRSIAAASTTMTPSSSDEVPAASADERRGGDEAAVVFAGGDGTDGG
STAAGVSSGEGGDVEGLVA
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mRNA from alignment at S-dermatodea_contig13599:1308..4268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13599.2083.1 ID=mRNA_S-dermatodea_contig13599.2083.1|Name=mRNA_S-dermatodea_contig13599.2083.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2961bp|location=Sequence derived from alignment at S-dermatodea_contig13599:1308..4268+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCAGCAGCGGGTGGCAATTTCGTCGGTGCTGTCGGAGAGACAGCAGCT
CTGCGTGTTCATGGTGGAGGACTTCGTGTTCCCGGGCATGACACGACGGT
TCCGGATCTTCGAGCCGAGGTACCGGGCGCTGGTGAAGCGCTGTCTCGGG
GAGGCCGAGCCGCTCCTGATCCTGCCGCTGGCAAGGGGGGGGAATACCGT
CGGTACGGCGGCGTACGTGTCCGGGCTGCACAACGTCGAGGAGGACGGGA
GGTGGGGGCGACGCCGTTTTTGTATCATTGGCTTTGTTTGATTTGACTAA
ATGTGATTCGTTTGAGTCGGTTTTGGTTGTGAATGATTTGGTTTGATTGG
TTAGTCGATTGGTTGGTTGGTCGGTTGGTTTATCTTCCGGGTGATTGGCT
CTAAATTTGTGGATTGATTTTGATTGGGCGGCTGATTTATTTGGATTTTT
GCGTTGATTTGATTTGATTTGATTTGATTGGTCATTTTGGTGGTAAGACG
ACAGTACGAAGAGTCGGTGGAAACTCCACAAAAAAACACAAAACCTCTCG
GATCGCGTCTGCGTCTATTGTTCCTCCCGCAGGCCAGCCAGCACACCTGT
ACCACCCTCGAAATTAGTTCACAGACCGGTACTTGACGACATCCTTCCAG
TACGCACGCATGCAACAGCGAAGCACCCGTGTTCGTCAGCGGCTGAGAGG
CGAAAACGGTCTTGAATAACCGACCTCTTCTCCGCATTTACAGTAAAAGC
GCGGGACAGATGCGAAAACCTGAAAGCGTATACAGTAAGTGTCTCGGTTC
CCGGAACGCGCGCGTCGAAGATTCACGTTGGCGGGGGAGCACGAGCGCTC
GAGATCGATCCCATAAATATACCCATTTTCGCTACTTGTGCAGTGCAAGT
AGGTGTGCTACTATTAACCCTTTTGGTACTAGCCCACTCTTTGGAGCTCC
GGTTAGCACGTATTGAGGCGTGCTTGAAACGGGGCTCTGGGGATCCGCAT
GGCGTATGACGCAGGACACTGAGAGAAAACGGAGCCCAAGGGGGAACGGG
GATGTAGCTCCGCCAACTGGCATCTATACTAGAGAGATTTTGATCGCTTC
GGAGAGCCCTCGTACCAAAAGGGTTAATAGAGCTACAACCCCACCACCAC
CACCACCACCATCACCACCACAGCGAAAAATACCCCGCCAAAGAGTGCTT
AGTGCTCTCCCGACCCCCCTTTGAAGGCGCGATCGGATGCAAGTGTGACT
GTGACTGTGACTGTGACTTTGGCTGTGACTGCGAATGCGAATGCGAATGC
GAATGCGAATGCGAATGCGAACGCGATTTTGCGATTTTGCGATTCTGCAA
ATTGCGAGTGGCAATTTGAAAAGCTGGTGCCGTGGTGATGCTTGTGATTC
ACCTCTGTTGAAATTGGTCCGTTATGACGACATGTAGAAAATAATTAGTC
CCAATAGCAAGCAAAAACCTCTGGCTTTTTTTTCCCCCGGGGACAGCTTT
TTCCGGCGTTGCCGCTGGCCTCGGTCAGGGCCCCCACTTCGTTAATATAT
TTTCATGGAGAGCACCGAGGCCGACACAGTAGGTATCGACTGACAGCTAT
GGTCATGGTGCAGGGTATTGCGCAATTTTTACCCTTATTCAAATCGAAGC
CACAGAGAAATCGTTACAGGTATGACATCGAACAGCGGTGGTTTTGTGCG
AAAAAATCACCCTCAGATTCAGAAAGAAACACCCTCGGAGGCGCAGAACT
ACGAAGCGACGCTGACTCTCCAAGCGGGGATCGTGTTTACGAAGGGTCAC
AGAAGAGGTTTCCCGCTTTGGCATTTTTTGATCGCCTGTCTGTGGTGCAC
AAGCCAGAAATTGTTCTCCAGGCCCTGGGGCTGCAGCTCTAAGCATCCCC
GGGGTAGACTACACAACTTTGTGGAATTTATTTGGCCGACCCAGGGTGCG
CGGGCGAGATGTAGATGGTCAGATGGGGTCTACATACTCTTGTTGTGCCT
CGACCAAACTGCGGGTGCTCGGGCACGCGTGTGTGGGAAGATACTCGCGG
TTGCAGCGCAAAGAACATGAGGCACCAAAGCCAGGCCAAAGCGGCTTTTC
GCCGCAAACCAGCCGTTACAACTGCTTTACGTTTGGTGCATCCTGACTTC
AATTGTTTGCGAGATTTTCCTTAGGAGTCGATTTTTTAAACCCTCGGCAA
CTTTTTTTGGTCGAACCAAATTTGACGCGGATGGTCTAATCGTGTGGGCA
GAGGTCTTATCTACTAGAGTCCCTCCTTGGCATTTTTTTATGTGGGGTCT
GTGTCGCGTACAGCAGGCAAAACTGTGTTTCTCACAGGAAAAAGTGGGTT
TCCAGCCTCATTATTTGTTGTTTCCTGGGCCTTCTTTTTTGTCATAACCC
AATTTTCAACACAGGTGGATTGTGCTGGTACACTGGTGCTGGTGCTGATG
CCCACGGACGATGCCTCCCCCCGCCCCCCGCCCCGCCCTCCCGACACCAC
ACGCACGCGCACACGCACACGCACGCGACGCGCGTACCCGCGCGCTTGGA
GACAGGTGCGAGATCGAGATAACGGGAATTTCCCGGTGCAACGTGAAGAC
GATGTGGATGAAGGGCGAGAGCTTCGGCCTGCACGAGGCGGTTGTGGAGT
ACTTCGGAGACGACAAGCAAGACGAACACGACAACCACAACGACCGATCC
GCTGCGGCACCCGCCGCTGCGGCCGCCGTCGCCACCAACGCAGTGGACGG
GGCGGAGAGAAATCATCCCCGGTCTATTGCTGCTGCTAGTACTACGATGA
CACCCTCCTCCTCGGACGAAGTTCCAGCCGCGAGTGCGGACGAGCGAAGA
GGTGGCGACGAAGCCGCTGTTGTATTCGCCGGCGGTGATGGTACCGATGG
CGGCAGCACGGCGGCGGGGGTTTCGAGCGGCGAAGGCGGGGATGTCGAGG
GGTTGGTGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13599:1308..4268+

>mRNA_S-dermatodea_contig13599.2083.1 ID=mRNA_S-dermatodea_contig13599.2083.1|Name=mRNA_S-dermatodea_contig13599.2083.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at S-dermatodea_contig13599:1308..4268+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGCAGCAGCGGGTGGCAATTTCGTCGGTGCTGTCGGAGAGACAGCAGCT
CTGCGTGTTCATGGTGGAGGACTTCGTGTTCCCGGGCATGACACGACGGT
TCCGGATCTTCGAGCCGAGGTACCGGGCGCTGGTGAAGCGCTGTCTCGGG
GAGGCCGAGCCGCTCCTGATCCTGCCGCTGGCAAGGGGGGGGAATACCGT
CGGTACGGCGGCGTACGTGTCCGGGCTGCACAACGTCGAGGAGGACGGGA
GCAGCAGCAGCGGGTGGCAATTTCGTCGGTGCTGTCGGAGAGACAGCAGC
TCTGCGTGTTCATGGTGGAGGACTTCGTGTTCCCGGGCATGACACGACGG
TTCCGGATCTTCGAGCCGAGGTACCGGGCGCTGGTGAAGCGCTGTCTCGG
GGAGGCCGAGCCGCTCCTGATCCTGCCGCTGGCAAGGGGGGGGAATACCG
TCGGTACGGCGGCGTACGTGTCCGGGCTGCACAACGTCGAGGAGGACGGG
AGGTGCGAGATCGAGATAACGGGAATTTCCCGGTGCAACGTGAAGACGAT
GTGGATGAAGGGCGAGAGCTTCGGCCTGCACGAGGCGGTTGTGGAGTACT
TCGGAGACGACAAGCAAGACGAACACGACAACCACAACGACCGATCCGCT
GCGGCACCCGCCGCTGCGGCCGCCGTCGCCACCAACGCAGTGGACGGGGC
GGAGAGAAATCATCCCCGGTCTATTGCTGCTGCTAGTACTACGATGACAC
CCTCCTCCTCGGACGAAGTTCCAGCCGCGAGTGCGGACGAGCGAAGAGGT
GGCGACGAAGCCGCTGTTGTATTCGCCGGCGGTGATGGTACCGATGGCGG
CAGCACGGCGGCGGGGGTTTCGAGCGGCGAAGGCGGGGATGTCGAGGGGT
TGGTGGCGGTGCGAGATCGAGATAACGGGAATTTCCCGGTGCAACGTGAA
GACGATGTGGATGAAGGGCGAGAGCTTCGGCCTGCACGAGGCGGTTGTGG
AGTACTTCGGAGACGACAAGCAAGACGAACACGACAACCACAACGACCGA
TCCGCTGCGGCACCCGCCGCTGCGGCCGCCGTCGCCACCAACGCAGTGGA
CGGGGCGGAGAGAAATCATCCCCGGTCTATTGCTGCTGCTAGTACTACGA
TGACACCCTCCTCCTCGGACGAAGTTCCAGCCGCGAGTGCGGACGAGCGA
AGAGGTGGCGACGAAGCCGCTGTTGTATTCGCCGGCGGTGATGGTACCGA
TGGCGGCAGCACGGCGGCGGGGGTTTCGAGCGGCGAAGGCGGGGATGTCG
AGGGGTTGGTGGCG
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