mRNA_S-dermatodea_contig1357.2072.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1357.2072.1
Unique NamemRNA_S-dermatodea_contig1357.2072.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1357.2072.1 vs. uniprot
Match: D7FV82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV82_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 7.490e-6
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 2 
Query:    2 FWGIYNELVHNQPLTMTDANALADSS 79
            FWGIYNELVHNQPLT+TDANALADSS
Sbjct:  465 FWGIYNELVHNQPLTLTDANALADSS 490
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1357.2072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV82_ECTSI7.490e-696.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1357contigS-dermatodea_contig1357:7001..7738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size738
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1357.2072.1prot_S-dermatodea_contig1357.2072.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1357 7047..7493 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924289.6326447-UTR-S-dermatodea_contig1357:7000..70461622924289.6326447-UTR-S-dermatodea_contig1357:7000..7046Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1357 7001..7046 +
1694079154.0859444-UTR-S-dermatodea_contig1357:7000..70461694079154.0859444-UTR-S-dermatodea_contig1357:7000..7046Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1357 7001..7046 +
1622924289.6502626-UTR-S-dermatodea_contig1357:7493..77381622924289.6502626-UTR-S-dermatodea_contig1357:7493..7738Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1357 7494..7738 +
1694079154.101846-UTR-S-dermatodea_contig1357:7493..77381694079154.101846-UTR-S-dermatodea_contig1357:7493..7738Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1357 7494..7738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924289.6421914-CDS-S-dermatodea_contig1357:7046..74931622924289.6421914-CDS-S-dermatodea_contig1357:7046..7493Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1357 7047..7493 +
1694079154.0938027-CDS-S-dermatodea_contig1357:7046..74931694079154.0938027-CDS-S-dermatodea_contig1357:7046..7493Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1357 7047..7493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1357.2072.1

>prot_S-dermatodea_contig1357.2072.1 ID=prot_S-dermatodea_contig1357.2072.1|Name=mRNA_S-dermatodea_contig1357.2072.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=149bp
MTDANALADSSQRYWVGYVRQQNLLAEIIPAYANYCSKLFMSVSAYRGFD
RCRTLNLMGHDVMTAVGGRYYYQRVSWGAPYRRSIRSLTGPESDNVVVVY
RNVHVPQTTLCHVFYACHPLCSGSPLGKLLRGLRDRPPMYAAIPTHAP*
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mRNA from alignment at S-dermatodea_contig1357:7001..7738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1357.2072.1 ID=mRNA_S-dermatodea_contig1357.2072.1|Name=mRNA_S-dermatodea_contig1357.2072.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=738bp|location=Sequence derived from alignment at S-dermatodea_contig1357:7001..7738+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTTCTGGGGCATCTACAACGAGCTGGTGCACAACCAGCCGCTCACCATGA
CGGACGCTAACGCCCTAGCAGATAGTTCGCAAAGGTACTGGGTAGGGTAT
GTACGTCAACAAAACCTACTTGCGGAGATTATCCCGGCATATGCAAACTA
TTGCTCCAAGTTATTCATGTCTGTGTCCGCTTACCGAGGGTTTGATCGTT
GTAGGACTCTAAACCTGATGGGCCATGACGTCATGACTGCCGTGGGCGGG
CGATATTACTACCAACGCGTGTCCTGGGGGGCTCCCTACCGCCGTTCAAT
ACGTTCACTGACAGGACCAGAGTCTGACAATGTTGTTGTGGTTTATAGGA
ATGTGCATGTTCCTCAGACAACCCTTTGCCACGTATTTTATGCGTGCCAC
CCGTTGTGTTCAGGTTCGCCGCTGGGTAAGCTGTTGCGCGGCCTGCGTGA
CCGCCCTCCCATGTATGCCGCAATCCCGACGCACGCACCCTGACTAACGA
GCCCTGCGATTGCTGGTGCACCATCAGCAGTAGTATTTGGCTGTTGCATT
ACTCCTTCTCTTCCGTTCTGCGACACGCTATCCAGTAAGACCCCCTCCGT
CGCCTGCTCCGAATACAAAATACCTCCCCTCCACTTTCACGCATGGCCCT
CCGGCCTTGTATACAATGACAAGCCTTAAGCGGATGTTGAAGGCGTTTAT
CAAGGACACCAAGCCCGACCTGTCACAGGGAGAGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1357:7001..7738+

>mRNA_S-dermatodea_contig1357.2072.1 ID=mRNA_S-dermatodea_contig1357.2072.1|Name=mRNA_S-dermatodea_contig1357.2072.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at S-dermatodea_contig1357:7001..7738+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGACGGACGCTAACGCCCTAGCAGATAGTTCGCAAAGGTACTGGGTAGG
GTATGTACGTCAACAAAACCTACTTGCGGAGATTATCCCGGCATATGCAA
ACTATTGCTCCAAGTTATTCATGTCTGTGTCCGCTTACCGAGGGTTTGAT
CGTTGTAGGACTCTAAACCTGATGGGCCATGACGTCATGACTGCCGTGGG
CGGGCGATATTACTACCAACGCGTGTCCTGGGGGGCTCCCTACCGCCGTT
CAATACGTTCACTGACAGGACCAGAGTCTGACAATGTTGTTGTGGTTTAT
AGGAATGTGCATGTTCCTCAGACAACCCTTTGCCACGTATTTTATGCGTG
CCACCCGTTGTGTTCAGGTTCGCCGCTGGGTAAGCTGTTGCGCGGCCTGC
GTGACCGCCCTCCCATGTATGCCGCAATCCCGACGCACGCACCCTGAATG
ACGGACGCTAACGCCCTAGCAGATAGTTCGCAAAGGTACTGGGTAGGGTA
TGTACGTCAACAAAACCTACTTGCGGAGATTATCCCGGCATATGCAAACT
ATTGCTCCAAGTTATTCATGTCTGTGTCCGCTTACCGAGGGTTTGATCGT
TGTAGGACTCTAAACCTGATGGGCCATGACGTCATGACTGCCGTGGGCGG
GCGATATTACTACCAACGCGTGTCCTGGGGGGCTCCCTACCGCCGTTCAA
TACGTTCACTGACAGGACCAGAGTCTGACAATGTTGTTGTGGTTTATAGG
AATGTGCATGTTCCTCAGACAACCCTTTGCCACGTATTTTATGCGTGCCA
CCCGTTGTGTTCAGGTTCGCCGCTGGGTAAGCTGTTGCGCGGCCTGCGTG
ACCGCCCTCCCATGTATGCCGCAATCCCGACGCACGCACCCTGA
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