mRNA_S-dermatodea_contig13569.2069.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13569.2069.1
Unique NamemRNA_S-dermatodea_contig13569.2069.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13569.2069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13569contigS-dermatodea_contig13569:3369..3980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size613
Cds size438
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924289.5415187-CDS-S-dermatodea_contig13569:3368..38061622924289.5415187-CDS-S-dermatodea_contig13569:3368..3806Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13569 3369..3806 +
1694079154.0388484-CDS-S-dermatodea_contig13569:3368..38061694079154.0388484-CDS-S-dermatodea_contig13569:3368..3806Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13569 3369..3806 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924289.5509717-UTR-S-dermatodea_contig13569:3806..39801622924289.5509717-UTR-S-dermatodea_contig13569:3806..3980Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13569 3807..3980 +
1694079154.0488756-UTR-S-dermatodea_contig13569:3806..39801694079154.0488756-UTR-S-dermatodea_contig13569:3806..3980Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13569 3807..3980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13569.2069.1prot_S-dermatodea_contig13569.2069.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13569 3369..3806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13569.2069.1

>prot_S-dermatodea_contig13569.2069.1 ID=prot_S-dermatodea_contig13569.2069.1|Name=mRNA_S-dermatodea_contig13569.2069.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=146bp
PSTRTISYAAYFAENNRLWWGTSCGVRANKNFIFGHSSDLSDCEIWRRAT
VSVQSQALRPRTPLGLQSTPTLWRGKAPPVHNIYIYYFQRQLGNLYNTRK
ERKDSTHSRNETARRTCTRQLHPPHLTPSRARVAPDAPCFFHEHD*
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mRNA from alignment at S-dermatodea_contig13569:3369..3980+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13569.2069.1 ID=mRNA_S-dermatodea_contig13569.2069.1|Name=mRNA_S-dermatodea_contig13569.2069.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig13569:3369..3980+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCATCCACCCGTACAATATCGTATGCAGCATATTTCGCCGAAAACAACCG
CCTCTGGTGGGGAACGTCATGCGGGGTGAGAGCCAACAAAAATTTCATCT
TTGGACATTCATCAGATTTATCGGACTGTGAAATTTGGCGCCGCGCGACT
GTCTCCGTACAATCACAAGCACTTCGGCCGCGCACACCTCTAGGCTTACA
ATCCACGCCAACTCTGTGGCGGGGGAAAGCACCGCCAGTACACAATATAT
ATATATATTACTTTCAACGACAATTAGGAAACTTGTATAATACAAGAAAG
GAACGAAAAGACTCAACTCACTCCAGGAACGAAACAGCACGGAGAACGTG
CACCAGGCAGCTCCACCCACCCCACTTGACACCCTCGAGAGCGAGGGTCG
CGCCGGACGCGCCCTGTTTCTTCCACGAGCATGACTAACGCGTGCGTGAC
GGCTCTGCCTTCCCTTGCGTGAACAAGCAAAAACCCCGTCAGGACCACTC
AAGCGAACGGACGGCCACCAACGAACAAACAAGCTACCAGTAATAATACC
AGGTACAAGACTCTAGAGACTGGTGTGCTATGATGCATTAGTGTACCAAA
ATGGAACTCCCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13569:3369..3980+

>mRNA_S-dermatodea_contig13569.2069.1 ID=mRNA_S-dermatodea_contig13569.2069.1|Name=mRNA_S-dermatodea_contig13569.2069.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at S-dermatodea_contig13569:3369..3980+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCATCCACCCGTACAATATCGTATGCAGCATATTTCGCCGAAAACAACCG
CCTCTGGTGGGGAACGTCATGCGGGGTGAGAGCCAACAAAAATTTCATCT
TTGGACATTCATCAGATTTATCGGACTGTGAAATTTGGCGCCGCGCGACT
GTCTCCGTACAATCACAAGCACTTCGGCCGCGCACACCTCTAGGCTTACA
ATCCACGCCAACTCTGTGGCGGGGGAAAGCACCGCCAGTACACAATATAT
ATATATATTACTTTCAACGACAATTAGGAAACTTGTATAATACAAGAAAG
GAACGAAAAGACTCAACTCACTCCAGGAACGAAACAGCACGGAGAACGTG
CACCAGGCAGCTCCACCCACCCCACTTGACACCCTCGAGAGCGAGGGTCG
CGCCGGACGCGCCCTGTTTCTTCCACGAGCATGACTAACCATCCACCCGT
ACAATATCGTATGCAGCATATTTCGCCGAAAACAACCGCCTCTGGTGGGG
AACGTCATGCGGGGTGAGAGCCAACAAAAATTTCATCTTTGGACATTCAT
CAGATTTATCGGACTGTGAAATTTGGCGCCGCGCGACTGTCTCCGTACAA
TCACAAGCACTTCGGCCGCGCACACCTCTAGGCTTACAATCCACGCCAAC
TCTGTGGCGGGGGAAAGCACCGCCAGTACACAATATATATATATATTACT
TTCAACGACAATTAGGAAACTTGTATAATACAAGAAAGGAACGAAAAGAC
TCAACTCACTCCAGGAACGAAACAGCACGGAGAACGTGCACCAGGCAGCT
CCACCCACCCCACTTGACACCCTCGAGAGCGAGGGTCGCGCCGGACGCGC
CCTGTTTCTTCCACGAGCATGACTAA
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