mRNA_S-dermatodea_contig13567.2068.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13567.2068.1
Unique NamemRNA_S-dermatodea_contig13567.2068.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13567.2068.1 vs. uniprot
Match: D7G5I5_ECTSI (Regulator of G protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I5_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.420e-18
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:    1 DMRRSCLERRARDVRAGAATMDTFNAVAFELLALMAHTSLRDFKVSPLYATIEACVQLGPRDVRNSGATSTMTFVDD 231
            DMR+ C+ RRARDV    A++DTF  V  ELL+LM H+SL +F+ S  YATI+AC+ +GPR  RNSGATS++T  D+
Sbjct:  380 DMRKDCVARRARDVELARASLDTFTPVVLELLSLMVHSSLPEFRGSAHYATIKACLYMGPRGTRNSGATSSLTHEDE 456
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BLAST of mRNA_S-dermatodea_contig13567.2068.1 vs. uniprot
Match: A0A6H5KTY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 3.940e-7
Identity = 24/44 (54.55%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:  100 LMAHTSLRDFKVSPLYATIEACVQLGPRDVRNSGATSTMTFVDD 231
            +M H+SL +F+ S  YATI+AC+ +GPR++RNSGATS++T  D+
Sbjct:  632 VMVHSSLPEFRGSAHYATIKACLYMGPREIRNSGATSSLTHEDE 675
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13567.2068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5I5_ECTSI1.420e-1855.84Regulator of G protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KTY4_9PHAE3.940e-754.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13567contigS-dermatodea_contig13567:5009..6133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size228
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13567.2068.1prot_S-dermatodea_contig13567.2068.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13567 5009..6130 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924289.4900014-CDS-S-dermatodea_contig13567:5008..51391622924289.4900014-CDS-S-dermatodea_contig13567:5008..5139Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13567 5009..5139 -
1694079154.008547-CDS-S-dermatodea_contig13567:5008..51391694079154.008547-CDS-S-dermatodea_contig13567:5008..5139Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13567 5009..5139 -
1622924289.500248-CDS-S-dermatodea_contig13567:6033..61301622924289.500248-CDS-S-dermatodea_contig13567:6033..6130Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13567 6034..6130 -
1694079154.019124-CDS-S-dermatodea_contig13567:6033..61301694079154.019124-CDS-S-dermatodea_contig13567:6033..6130Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13567 6034..6130 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924289.5119765-UTR-S-dermatodea_contig13567:6130..61331622924289.5119765-UTR-S-dermatodea_contig13567:6130..6133Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13567 6131..6133 -
1694079154.0290878-UTR-S-dermatodea_contig13567:6130..61331694079154.0290878-UTR-S-dermatodea_contig13567:6130..6133Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13567 6131..6133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13567.2068.1

>prot_S-dermatodea_contig13567.2068.1 ID=prot_S-dermatodea_contig13567.2068.1|Name=mRNA_S-dermatodea_contig13567.2068.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=76bp
MRRSCLERRARDVRAGAATMDTFNAVAFELLALMAHTSLRDFKVSPLYAT
IEACVQLGPRDVRNSGATSTMTFVDD
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mRNA from alignment at S-dermatodea_contig13567:5009..6133-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13567.2068.1 ID=mRNA_S-dermatodea_contig13567.2068.1|Name=mRNA_S-dermatodea_contig13567.2068.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1125bp|location=Sequence derived from alignment at S-dermatodea_contig13567:5009..6133- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACATGAGGCGATCATGTCTGGAGAGGCGCGCGCGAGACGTGCGCGCGGG
AGCCGCGACGATGGACACGTTCAACGCTGTAGCCTTCGAGCTGCTGGCAC
GTGAGTGTGTGCGCTTATGCATGATGCACGTGCTGACATCGGTGGTAGCG
GTGCTCTTGCACCAGCGCTCCGAGAGCGGACCGTTAATATGTTGGCCGCC
GCCGCCGCGGCCGCCCCTTACGCCAAGCGACCTCCACAAGAGTACAAGCT
GTGTGGATTGAGCCTACTCCGATAGCTGGATAATTTCGCCGCTTTCCTAA
CCCGCCTACTTTGGTTTTCCTGTTGTAATACCAACAAGTTGCGAGCTGTA
GTTGCCCGAGGCTGTCCGTCGTAGGTTGGCCACTGCTATGGAGGCTACGG
GCGGGCATTTTTGCGTTGCGTTGCGTTGCACTGCATTGTTTTTCCCGAAC
CCCTCGCGCCACCCATGCTGCGGGAAAAATGACGTTCAAGTCCGTGGACG
CCGCTGTTGCGTGTTGGGAGGCTATATTTATATTATAGCATCATCCGACG
ATTGATGTTGGTGTGATCGGCAGTTGGCCCACTGGCGTCGTGGCCTCCTC
CTCTTTCGAGCGTAGGTTTGCGACCTGGTCGGCGGGCGCGTCTGTTGGTT
GGCGGGGCCGGAGCCGTCTTGGGTATGGTACGGCGGAAAGACAGGCCAAA
GGTCGAGTGAAAACGTCCGTGTAGACAGTAGATATTGAGATGCGACCTCT
GTCGGAACGCGAGAAACCAGGAAGAACGAGCGGCATGTATCTGCGCCGTG
ACCCGAGTGCGAACAACGTTTAACCCTCCTTCTCTCTCTTTCTCTTTCTC
TCTCCCATTTTCCTCGTCGTCTCAACCTCCCGGTTTCCCTTTGTCGCGTG
CGCGTCCCTACCTCTGTCTCACGGAAAACCACACCAAAAACCACGGAATA
AACACACACACACCCACACACGTACACGCGTACACGGACAACAGTGATGG
CGCACACTTCGCTGCGAGACTTCAAGGTATCGCCGCTGTACGCGACAATC
GAGGCGTGCGTGCAGCTCGGGCCCCGCGACGTGCGAAATAGTGGCGCCAC
GAGTACCATGACGTTCGTCGACGAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig13567:5009..6133-

>mRNA_S-dermatodea_contig13567.2068.1 ID=mRNA_S-dermatodea_contig13567.2068.1|Name=mRNA_S-dermatodea_contig13567.2068.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at S-dermatodea_contig13567:5009..6133- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGCGATCATGTCTGGAGAGGCGCGCGCGAGACGTGCGCGCGGGAGC
CGCGACGATGGACACGTTCAACGCTGTAGCCTTCGAGCTGCTGGCACATG
AGGCGATCATGTCTGGAGAGGCGCGCGCGAGACGTGCGCGCGGGAGCCGC
GACGATGGACACGTTCAACGCTGTAGCCTTCGAGCTGCTGGCACTGATGG
CGCACACTTCGCTGCGAGACTTCAAGGTATCGCCGCTGTACGCGACAATC
GAGGCGTGCGTGCAGCTCGGGCCCCGCGACGTGCGAAATAGTGGCGCCAC
GAGTACCATGACGTTCGTCGACGATTGATGGCGCACACTTCGCTGCGAGA
CTTCAAGGTATCGCCGCTGTACGCGACAATCGAGGCGTGCGTGCAGCTCG
GGCCCCGCGACGTGCGAAATAGTGGCGCCACGAGTACCATGACGTTCGTC
GACGAT
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