mRNA_S-dermatodea_contig1356.2067.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1356.2067.1
Unique NamemRNA_S-dermatodea_contig1356.2067.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1356.2067.1 vs. uniprot
Match: D7G3T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T3_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.620e-19
Identity = 45/53 (84.91%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:  112 DPLLGECSLNLVEVVSGRAPHVEEWVPLNTEGDLRLSLHYDSVGALPTPGDSV 270
            D LLGECSLNLVEVVSGRAPHVEEWVPL++EG+LRLSL YDSV  LP PGDSV
Sbjct:  245 DRLLGECSLNLVEVVSGRAPHVEEWVPLDSEGELRLSLDYDSVRELPVPGDSV 297
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BLAST of mRNA_S-dermatodea_contig1356.2067.1 vs. uniprot
Match: A0A7S2P503_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P503_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.940e-5
Identity = 23/75 (30.67%), Postives = 41/75 (54.67%), Query Frame = 1 
Query:  112 DPLLGECSLNLVEVVSGRAPHVEEWVPLNTE-------GDLRLSLHYDSVGALPTPGDSVVLLCLANRLDFFPLP 315
            D  LGEC +N++++++GR P  +EW+ L  +       G++R+ + Y+   + P PGD   L       D +P+P
Sbjct:  108 DVFLGECHINILDILTGRLPCFDEWISLVDDNKDEEYIGEVRVVIEYEPTDSAPRPGDMCRLTSFCQLKDVYPIP 182
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1356.2067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3T3_ECTSI1.620e-1984.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2P503_9STRA4.940e-530.67Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1356contigS-dermatodea_contig1356:18800..20002 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size491
Cds size489
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924289.4451315-CDS-S-dermatodea_contig1356:18799..190661622924289.4451315-CDS-S-dermatodea_contig1356:18799..19066Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1356 18800..19066 +
1694079153.9834511-CDS-S-dermatodea_contig1356:18799..190661694079153.9834511-CDS-S-dermatodea_contig1356:18799..19066Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1356 18800..19066 +
1622924289.4618506-CDS-S-dermatodea_contig1356:19780..200021622924289.4618506-CDS-S-dermatodea_contig1356:19780..20002Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1356 19781..20002 +
1694079153.9938576-CDS-S-dermatodea_contig1356:19780..200021694079153.9938576-CDS-S-dermatodea_contig1356:19780..20002Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1356 19781..20002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1356.2067.1prot_S-dermatodea_contig1356.2067.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1356 18800..20002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1356.2067.1

>prot_S-dermatodea_contig1356.2067.1 ID=prot_S-dermatodea_contig1356.2067.1|Name=mRNA_S-dermatodea_contig1356.2067.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=163bp
AAAAAIAERVAGRDSTGGESSKAPKSSGDGGGSGGGGDPLLGECSLNLVE
VVSGRAPHVEEWVPLNTEGDLRLSLHYDSVGALPTPGDSVVLLCLANRLD
FFPLPIWDTEDDPARPNSPSWLWAGAASRRCLGRGGGGGAGKGFRVEEAD
DNFFLLSYATPEG
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mRNA from alignment at S-dermatodea_contig1356:18800..20002+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1356.2067.1 ID=mRNA_S-dermatodea_contig1356.2067.1|Name=mRNA_S-dermatodea_contig1356.2067.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1203bp|location=Sequence derived from alignment at S-dermatodea_contig1356:18800..20002+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGCCGCCGCGGCTATCGCCGAACGTGTTGCTGGCAGGGACAGTACCGG
CGGTGAGAGTTCGAAGGCCCCCAAAAGCTCAGGTGATGGAGGTGGCAGTG
GCGGTGGTGGCGATCCGCTCCTCGGAGAATGCTCACTCAACCTGGTCGAG
GTGGTGTCCGGGCGAGCGCCGCACGTTGAGGAGTGGGTGCCGCTGAACAC
GGAGGGGGATCTGCGGCTGTCCCTGCACTACGACTCGGTCGGGGCCTTGC
CTACGCCTGGTGACTCGGTGAGAAGGGTAGACAGTGCAAGGGTTGGATCG
GCCACGCGTAAAGGGTTAGTTGGATTACGAAAGGAACACTGTGTGCGTCG
GCAGCGCGGCGATTGCAGTAGAGGTTGGGACGAGAAAAACGCTCATAAAA
ATTTCGTCGAGAACGGTTGGTACCGCACGCCAAAGTGCCCAAGTCTTCTG
GACCGTGGCACACCACGAAGGACGAGTATCCAGAGTCCGCTGCTTGCGAG
CGCGGCGGTTTCTCAGGCTAGACGCCACTTGCCTGGGTCGCTAGTGAACA
GGTGTGGGTTTTGTGGGGTCGTTCAATCAGCGCGGGGCATTGGAGTGCCT
CTACCTGCTAGAGTGGGATGTGCGAGCTCTCGAAGCACGGCGTCGGGCCT
GTTCGTCGGGTTCACGGCCCAGAGCGGTGGCCGAGCCAAGGGAGTGCGTG
ACTCTTGCGCGCCCTTCTCTGACGATTAAGAGACAGAAGAGGATTAGGGT
TACCGGGATACTCTTATGTGTTTCCTTTTGTGCGTGCGGTATGTTTTCTA
TGTTGACGCAGTGCTGCCCACCGGAGACACGTGCCCCCTGCCCACCCGAT
TACACACATTCTCGAAACGATCCACACAGTGTCACACTTCCCGTCTGGCT
TCCCTCGTCCGCACTGTTCGTGCCCCCTTACCCCCGCGATTCCTTCATCT
CACGACACCCCCCCACTCCGGCCTGCAAAAGGTTGTTTTGCTCTGCCTGG
CAAACCGCCTCGACTTCTTCCCTCTCCCCATCTGGGACACCGAGGACGAT
CCGGCAAGACCGAATTCGCCCTCATGGCTATGGGCGGGGGCGGCCTCTAG
GCGGTGTCTGGGGCGCGGCGGAGGCGGCGGAGCTGGCAAAGGGTTTCGAG
TGGAGGAGGCCGACGATAATTTTTTCCTACTGTCCTACGCTACGCCGGAG
GGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1356:18800..20002+

>mRNA_S-dermatodea_contig1356.2067.1 ID=mRNA_S-dermatodea_contig1356.2067.1|Name=mRNA_S-dermatodea_contig1356.2067.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at S-dermatodea_contig1356:18800..20002+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGCCGCCGCGGCTATCGCCGAACGTGTTGCTGGCAGGGACAGTACCGG
CGGTGAGAGTTCGAAGGCCCCCAAAAGCTCAGGTGATGGAGGTGGCAGTG
GCGGTGGTGGCGATCCGCTCCTCGGAGAATGCTCACTCAACCTGGTCGAG
GTGGTGTCCGGGCGAGCGCCGCACGTTGAGGAGTGGGTGCCGCTGAACAC
GGAGGGGGATCTGCGGCTGTCCCTGCACTACGACTCGGTCGGGGCCTTGC
CTACGCCTGGTGACTCGGCCGCCGCCGCGGCTATCGCCGAACGTGTTGCT
GGCAGGGACAGTACCGGCGGTGAGAGTTCGAAGGCCCCCAAAAGCTCAGG
TGATGGAGGTGGCAGTGGCGGTGGTGGCGATCCGCTCCTCGGAGAATGCT
CACTCAACCTGGTCGAGGTGGTGTCCGGGCGAGCGCCGCACGTTGAGGAG
TGGGTGCCGCTGAACACGGAGGGGGATCTGCGGCTGTCCCTGCACTACGA
CTCGGTCGGGGCCTTGCCTACGCCTGGTGACTCGGTTGTTTTGCTCTGCC
TGGCAAACCGCCTCGACTTCTTCCCTCTCCCCATCTGGGACACCGAGGAC
GATCCGGCAAGACCGAATTCGCCCTCATGGCTATGGGCGGGGGCGGCCTC
TAGGCGGTGTCTGGGGCGCGGCGGAGGCGGCGGAGCTGGCAAAGGGTTTC
GAGTGGAGGAGGCCGACGATAATTTTTTCCTACTGTCCTACGCTACGCCG
GAGGGGGTTGTTTTGCTCTGCCTGGCAAACCGCCTCGACTTCTTCCCTCT
CCCCATCTGGGACACCGAGGACGATCCGGCAAGACCGAATTCGCCCTCAT
GGCTATGGGCGGGGGCGGCCTCTAGGCGGTGTCTGGGGCGCGGCGGAGGC
GGCGGAGCTGGCAAAGGGTTTCGAGTGGAGGAGGCCGACGATAATTTTTT
CCTACTGTCCTACGCTACGCCGGAGGGG
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