mRNA_S-dermatodea_contig1356.2066.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1356.2066.1
Unique NamemRNA_S-dermatodea_contig1356.2066.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig1356.2066.1 vs. uniprot
Match: A0A6H5KRG9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRG9_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 7.780e-26
Identity = 64/139 (46.04%), Postives = 89/139 (64.03%), Query Frame = 1 
Query:   97 VDDALEVGCLSVQLVGARNIK-VGGGGMIDLF-LAPEVNAYCKISLGECEVTSGMAVRTSVGHTWNREQLFFPVKVPLSCVVGAA----KVWDTPQTDNIKNKRAGSSYPLARNSAAAGRAP--GGWSDPGSASCGASL 489
            V+D LEVG L V L+ AR++K V  GG+ D+  L+P+ + YC+ +LGE E TSG+ VRT+ GH+WNREQ+FFPVKVP+SCV+G +        +    +  N+R G+  P  R +A  G  P  GG    GS +CG+SL
Sbjct:    6 VEDMLEVGSLHVGLIAARDVKRVKQGGVSDMLGLSPQASPYCRFTLGEYEFTSGVGVRTTGGHSWNREQIFFPVKVPISCVIGGSGQSYHTAGSGSDGSSTNRRKGTKGP--RKAATPGGQPKSGGKGGSGSVACGSSL 142
[Close]
BLAST of mRNA_S-dermatodea_contig1356.2066.1 vs. uniprot
Match: D7G3T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3T3_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 1.210e-19
Identity = 45/81 (55.56%), Postives = 62/81 (76.54%), Query Frame = 1 
Query:  109 LEVGCLSVQLVGARNIK-VGGGGMIDLF-LAPEVNAYCKISLGECEVTSGMAVRTSVGHTWNREQLFFPVKVPLSCVVGAA 345
            L VG L V L+ AR++K V  GG+ D+  L+P+ + YC+ +LGE E TSG+ VRT+ GH+WNREQ++FPVKVP+SCVVG +
Sbjct:    2 LGVGSLHVGLIAARDVKRVKQGGVSDMLGLSPQASPYCRFTLGEYEFTSGVGVRTTGGHSWNREQIYFPVKVPISCVVGGS 82
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1356.2066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KRG9_9PHAE7.780e-2646.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G3T3_ECTSI1.210e-1955.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1356contigS-dermatodea_contig1356:15033..18033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size496
Cds size492
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1356.2066.1prot_S-dermatodea_contig1356.2066.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1356 15033..18031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924289.3789618-CDS-S-dermatodea_contig1356:15032..152631622924289.3789618-CDS-S-dermatodea_contig1356:15032..15263Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1356 15033..15263 +
1694079153.9562178-CDS-S-dermatodea_contig1356:15032..152631694079153.9562178-CDS-S-dermatodea_contig1356:15032..15263Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1356 15033..15263 +
1622924289.388639-CDS-S-dermatodea_contig1356:17458..175421622924289.388639-CDS-S-dermatodea_contig1356:17458..17542Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1356 17459..17542 +
1694079153.9648073-CDS-S-dermatodea_contig1356:17458..175421694079153.9648073-CDS-S-dermatodea_contig1356:17458..17542Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1356 17459..17542 +
1622924289.399301-CDS-S-dermatodea_contig1356:17854..180311622924289.399301-CDS-S-dermatodea_contig1356:17854..18031Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1356 17855..18031 +
1694079153.974051-CDS-S-dermatodea_contig1356:17854..180311694079153.974051-CDS-S-dermatodea_contig1356:17854..18031Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1356 17855..18031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1356.2066.1

>prot_S-dermatodea_contig1356.2066.1 ID=prot_S-dermatodea_contig1356.2066.1|Name=mRNA_S-dermatodea_contig1356.2066.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=164bp
ELLAGARCSQDECCERRTADIAMATAEIRPEAVDDALEVGCLSVQLVGAR
NIKVGGGGMIDLFLAPEVNAYCKISLGECEVTSGMAVRTSVGHTWNREQL
FFPVKVPLSCVVGAAKVWDTPQTDNIKNKRAGSSYPLARNSAAAGRAPGG
WSDPGSASCGASLD
back to top

mRNA from alignment at S-dermatodea_contig1356:15033..18033+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1356.2066.1 ID=mRNA_S-dermatodea_contig1356.2066.1|Name=mRNA_S-dermatodea_contig1356.2066.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3001bp|location=Sequence derived from alignment at S-dermatodea_contig1356:15033..18033+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCTTCTTGCGGGTGCTCGGTGCTCGCAGGACGAGTGTTGTGAGCGTCG
TACCGCTGACATTGCGATGGCTACAGCAGAGATCCGTCCCGAAGCGGTCG
ATGATGCGCTGGAAGTAGGATGCCTGAGCGTACAGCTGGTCGGGGCGCGA
AATATCAAGGTCGGGGGTGGAGGCATGATCGACCTCTTCCTTGCACCTGA
AGTCAACGCCTACTGCAAAATCTCGCTCGGGGTGAGTCTAGTCTTGGTCC
CCACTTAGAGCCGTGCACGCTTCTGCGTGGCGCACGTCCTTGGTGGGTGT
CGAGAAGTTTAGCGTATCGCACAGCCAAGAGTCACCTAGAAACATATAGG
GTTCAAGTGTTTTACGTTCTCATGATATGATACTTGTACGTGCTCAGGTA
CCGGATTATCCCCGTCGGGCGACCCTCTGCTACCCGCTGTGCTGCATGAA
TCCTCGGGCGTGAGTGTAATGCTGACGCGTCTGACCCAAGGCGCTATGCA
TGCAAGCGCTGTTGCGTGGCATTCTACCACCAACACTCAAGCGTACGTAT
TTGCTATGATATGCACCTCGCAATATAGTACTTGTAGGTAGAACAAAGAA
CAAAGCGCTGTCTCTGCAACCGCACCACCGACAAGCCATTTTCCGGTCCG
TTCGGTGCGGGTAGACAGTGCAACTGGCGACGGAGGTGCAACTGGAGCGA
CAATGCGTCGCTGTGGTATTTATTGCGGGGAGGTTCACCCGGGGTAGCGT
TTTATGTCGAGTGGAAAGCGCGAATCGCACGGATTTGCCTACGTAGGCAG
CTAGGCTCAGATTCAATGGGTATGATGGGAATAATTACAGGAAGAGTGAA
AAAGCGGGGGGCGGGGGGCGGGGAAGAACGAGGATTTACCCGCCGTTCGT
AGATCTAACCCATTTGACGGCGAGCAAGCCTGAAATCTTATATGCGAGTA
GACAGCCATCGCCGTTTGTGTCGATGCTCCGCCACAACAGCAGAGGGCAT
TCCATTCGCCGAGGACCCGCCTGTCTTTACCTTATTTTTGTAACTACACG
CTGCGATTTCTTTGGGAGATATGTAGATAGAGCTAACTTTGCGCTTCGTC
CTCTGACGCCCCCCTGCAGATTCTGAGGTGCACAGATTTGTGATAGACCC
CCCCACTCGTGGGATCCTGGAATGATATACATGGATGCTTCGCGCGCGAT
TTTAATATATCGTGTCTACGCCTCAACGCGGCCACCATGATGGTAGATTT
CGGCACTAAAATATTATCTCGCGTCTGACGGGGTTTGGGCCCTCTCCTCG
CTGGCTCCGCGTAGACAATCTCTGCTGCTGCGGTTCTCCAGTGGTTCTGT
ACTAAACAAAAACAAGTACGATCGGTACTTCTACTGTTTAACTTTGCAGG
ACGCTTGGTATGGACACATTTCGCGCACTAGAGGTTGCGTGATGACTCCT
GGAGTGTCCAGGTAGTGTCGCTACAACACGATGTGCGTTAAACCTGTAGC
CTTATTCTCACGGCTTGGGGGCATATCGCCCAGTTGCCGATGCCTCAAGA
GGGCGATTTACACACCGCTGTGTACCCGCGAGCAAGAAGACATCGACGAC
TTTGTTGTGCCCTGCATGAGGCACTCTGTTGCTGTAACTTTGGCTTGAAG
ACACCACGCACTGGTGCGCAGTCCAACACAATATCCTCTCAGCTACGTCA
CATGTTGTTAGTTTACGAGCCAACCTCTTTCGCCATCATCGCCGCCCTTC
GGCATGGTGATTGGCTTGCAATGCGCTATGCAATTTATCGCGCTCGCGGA
AAAAAATTGCCGATCAGCGTGTTTTGCGCTATACAAATTTTACTCTGCCC
AAAAAACTGCCGCCCGTCTTTCTGGCGGATTGGATTTTGTCGGCGACACG
TAAATTGCTTGCTGCTGTACAACGAGTCAATGAACGTGTTGCATACCGCC
TAATACCAGAGGCAGGTACTGTACAGTACACACTTCCACTCTCGTATTTG
ACAGACGTCTTGAAATGCCATTATATCTATGGTAAGTCGGTGTGAACTGA
AATCCATCTCTACCCCACACTACTTGGGGAGTTCGCGCTGGTTCCCTCTT
TATAGAAAAACACAATGAGACAATCTACAGACAACTTGTATTCGCTTGTG
TTTAGCATGTGTGATGGGTGGGTGGTGGGTGCCACTTCGGGTGTTATGTG
TCATCGCTTTCATTTGGGCAACAGCGAAGTACTTAAAACTGTAGGAGCTA
CAAGCACAGCAGTACCCTGCGGCTTTAGTGTGAGTTCAACGACAATCCAG
TCGTCGATATCCCGGCCGAGGAGCAACTTCAGAGGTGTAAGGATTCAAAA
CGTGTTTCTCTAACCGATTCCGCATGCCCGCCGTCTTGACTAGCCCGCGC
GTGCAACTCCCATACCCTCGTCGCAGGAGTGTGAGGTCACGAGCGGGATG
GCCGTGAGGACGTCCGTAGGGCACACCTGGAACAGGGAACAGTTGTTCTT
CCCCGTCAAGGTGTGCATGCATCTGTTGTCACGATCTACGATATCTAGCC
TCTACTGTGGCAGCGTGCTAATGCGAATAGCTCGCTCGTTCGTTCTGTGC
TCTATCACCACCACCGGCGTAACGCAAGCAGCTTTTTTCGAAGCGAAGCA
CCTGCGCGCTCAAGCTCCGGGGGTTGGCGCGCGCTTTCACAACCGGAGCC
CTCCTCAACCCATCATCCTTCTCAACAAAACTCGCAGGTTATGAGCAAAA
ACATGGTACACACCACTTTCGCCCCACTTGCTTCCTCCCTACACCGCCCC
GCAACGCTCTATACACGGCAAGGTTCCCCTCTCGTGCGTTGTGGGAGCGG
CCAAAGTATGGGACACCCCACAAACGGACAACATAAAAAACAAGCGCGCG
GGATCCAGCTACCCTCTCGCGCGCAATTCTGCCGCAGCCGGCAGAGCCCC
CGGGGGGTGGTCGGACCCAGGGAGCGCGAGTTGTGGGGCGAGTCTGGATC
G
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig1356:15033..18033+

>mRNA_S-dermatodea_contig1356.2066.1 ID=mRNA_S-dermatodea_contig1356.2066.1|Name=mRNA_S-dermatodea_contig1356.2066.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at S-dermatodea_contig1356:15033..18033+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGCTTCTTGCGGGTGCTCGGTGCTCGCAGGACGAGTGTTGTGAGCGTCG
TACCGCTGACATTGCGATGGCTACAGCAGAGATCCGTCCCGAAGCGGTCG
ATGATGCGCTGGAAGTAGGATGCCTGAGCGTACAGCTGGTCGGGGCGCGA
AATATCAAGGTCGGGGGTGGAGGCATGATCGACCTCTTCCTTGCACCTGA
AGTCAACGCCTACTGCAAAATCTCGCTCGGGGAGCTTCTTGCGGGTGCTC
GGTGCTCGCAGGACGAGTGTTGTGAGCGTCGTACCGCTGACATTGCGATG
GCTACAGCAGAGATCCGTCCCGAAGCGGTCGATGATGCGCTGGAAGTAGG
ATGCCTGAGCGTACAGCTGGTCGGGGCGCGAAATATCAAGGTCGGGGGTG
GAGGCATGATCGACCTCTTCCTTGCACCTGAAGTCAACGCCTACTGCAAA
ATCTCGCTCGGGGAGTGTGAGGTCACGAGCGGGATGGCCGTGAGGACGTC
CGTAGGGCACACCTGGAACAGGGAACAGTTGTTCTTCCCCGTCAAGGAGT
GTGAGGTCACGAGCGGGATGGCCGTGAGGACGTCCGTAGGGCACACCTGG
AACAGGGAACAGTTGTTCTTCCCCGTCAAGGTTCCCCTCTCGTGCGTTGT
GGGAGCGGCCAAAGTATGGGACACCCCACAAACGGACAACATAAAAAACA
AGCGCGCGGGATCCAGCTACCCTCTCGCGCGCAATTCTGCCGCAGCCGGC
AGAGCCCCCGGGGGGTGGTCGGACCCAGGGAGCGCGAGTTGTGGGGCGAG
TCTGGATGTTCCCCTCTCGTGCGTTGTGGGAGCGGCCAAAGTATGGGACA
CCCCACAAACGGACAACATAAAAAACAAGCGCGCGGGATCCAGCTACCCT
CTCGCGCGCAATTCTGCCGCAGCCGGCAGAGCCCCCGGGGGGTGGTCGGA
CCCAGGGAGCGCGAGTTGTGGGGCGAGTCTGGAT
back to top