mRNA_S-dermatodea_contig13557.2062.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13557.2062.1
Unique NamemRNA_S-dermatodea_contig13557.2062.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13557.2062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13557contigS-dermatodea_contig13557:4606..4913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size309
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924289.1081555-CDS-S-dermatodea_contig13557:4605..49111622924289.1081555-CDS-S-dermatodea_contig13557:4605..4911Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13557 4606..4911 +
1694079153.7541323-CDS-S-dermatodea_contig13557:4605..49111694079153.7541323-CDS-S-dermatodea_contig13557:4605..4911Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13557 4606..4911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13557.2062.1prot_S-dermatodea_contig13557.2062.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13557 4606..4911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13557.2062.1

>prot_S-dermatodea_contig13557.2062.1 ID=prot_S-dermatodea_contig13557.2062.1|Name=mRNA_S-dermatodea_contig13557.2062.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
FGLVAGRSLVYARCRRQRSRSPRPRSPPRHLHRPGKIGRTRGPWGRKKTR
RRKPPRLYPPPPPRPHHRRRCCCSPRCCSRALARPPQPAHRPSLDLSTLP
VK
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mRNA from alignment at S-dermatodea_contig13557:4606..4913+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13557.2062.1 ID=mRNA_S-dermatodea_contig13557.2062.1|Name=mRNA_S-dermatodea_contig13557.2062.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=308bp|location=Sequence derived from alignment at S-dermatodea_contig13557:4606..4913+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCGGCCTTGTCGCAGGCCGGTCCCTGGTCTACGCTCGCTGTCGCCGTCA
GCGCTCCCGCTCTCCGCGCCCGAGAAGCCCCCCTCGTCATCTTCATCGTC
CTGGGAAGATTGGGAGGACTCGAGGTCCATGGGGGAGGAAGAAGACCCGC
CGTAGGAAGCCACCTCGTCTTTATCCTCCTCCTCCTCCTCGTCCCCATCA
TCGTCGCCGTTGTTGTTGCTCTCCCCGCTGCTGTTCGCGAGCCCTCGCTC
GACCGCCTCAACCCGCTCATCGTCCATCACTCGACCTCTCGACGCTACCG
GTGAAGCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13557:4606..4913+

>mRNA_S-dermatodea_contig13557.2062.1 ID=mRNA_S-dermatodea_contig13557.2062.1|Name=mRNA_S-dermatodea_contig13557.2062.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig13557:4606..4913+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCGGCCTTGTCGCAGGCCGGTCCCTGGTCTACGCTCGCTGTCGCCGTCA
GCGCTCCCGCTCTCCGCGCCCGAGAAGCCCCCCTCGTCATCTTCATCGTC
CTGGGAAGATTGGGAGGACTCGAGGTCCATGGGGGAGGAAGAAGACCCGC
CGTAGGAAGCCACCTCGTCTTTATCCTCCTCCTCCTCCTCGTCCCCATCA
TCGTCGCCGTTGTTGTTGCTCTCCCCGCTGCTGTTCGCGAGCCCTCGCTC
GACCGCCTCAACCCGCTCATCGTCCATCACTCGACCTCTCGACGCTACCG
GTGAAGTTCGGCCTTGTCGCAGGCCGGTCCCTGGTCTACGCTCGCTGTCG
CCGTCAGCGCTCCCGCTCTCCGCGCCCGAGAAGCCCCCCTCGTCATCTTC
ATCGTCCTGGGAAGATTGGGAGGACTCGAGGTCCATGGGGGAGGAAGAAG
ACCCGCCGTAGGAAGCCACCTCGTCTTTATCCTCCTCCTCCTCCTCGTCC
CCATCATCGTCGCCGTTGTTGTTGCTCTCCCCGCTGCTGTTCGCGAGCCC
TCGCTCGACCGCCTCAACCCGCTCATCGTCCATCACTCGACCTCTCGACG
CTACCGGTGAAG
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