mRNA_S-dermatodea_contig13550.2059.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13550.2059.1
Unique NamemRNA_S-dermatodea_contig13550.2059.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig13550.2059.1 vs. uniprot
Match: D7FQ27_ECTSI (Chorismate mutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ27_ECTSI)

HSP 1 Score: 343 bits (879), Expect = 2.800e-106
Identity = 170/205 (82.93%), Postives = 184/205 (89.76%), Query Frame = 3
Query:    3 VRRYMSLEELAFFPMFLPEPILPPLDFSRLLAPNNVNVNEEILRRYISEVVPMICEPGDDEQHGSSVVCDVNALQALSRRVHLGKFVAESKFQEDSRTYQALCRAGDVPGVLALLTNKAVEKKVLHRAFMKASTYGSDVNDPPIL------GEGAADEERNFKVDPHSIVAIYRDFVIPLTKDVEILYLFQRAGYPCPSLEGIHD 599
            VRRYMSLEELAFFPMFLPEPILPPLDF RLLAPN+VNVN++IL+RY+SE+VPMICEPGDD+QHGSSVVCDVNALQALSRRVHLGKFVAESKFQEDS+TYQ LCRAGD  GVL LLTNKAVE+KVL RAFMKASTYGSD+ND P+       G+GAA  E+NFKV+P  IV IYRD VIPLTKDVEILYLFQR GYPCPSLEGIHD
Sbjct:  191 VRRYMSLEELAFFPMFLPEPILPPLDFPRLLAPNDVNVNDQILKRYVSEIVPMICEPGDDDQHGSSVVCDVNALQALSRRVHLGKFVAESKFQEDSKTYQDLCRAGDARGVLELLTNKAVEEKVLKRAFMKASTYGSDINDVPVSTEDAKGGDGAAKAEQNFKVNPQFIVDIYRDTVIPLTKDVEILYLFQRTGYPCPSLEGIHD 395          
BLAST of mRNA_S-dermatodea_contig13550.2059.1 vs. uniprot
Match: A0A836CAA2_9STRA (Chorismate mutase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAA2_9STRA)

HSP 1 Score: 265 bits (678), Expect = 2.510e-79
Identity = 135/201 (67.16%), Postives = 155/201 (77.11%), Query Frame = 3
Query:    3 VRRYMSLEELAFFPMFLPEPILPPLDFSRLLAPNNVNVNEEILRRYISEVVPMICEPGDDEQHGSSVVCDVNALQALSRRVHLGKFVAESKFQEDSRTYQALCRAGDVPGVLALLTNKAVEKKVLHRAFMKASTYGSDVNDPPILGEGAADEERNFKVDPHSIVAIYRDFVIPLTKDVEILYLFQRAGYPCPSLEGIHD*E 605
            VRRYMS EEL FFP FLP P+LPPLDF ++LAPN+VN+N+ +L+RY++EVVP IC  GDDEQHGSSV+CD+NALQALSRRVH GKFVAESKFQED   Y+ LC  G+  GV  LLTNKAVEKKV+ RA  KA+ Y  +     I  EGAA     FKV P +I AIY+D +IPLTKDVEILYLFQR GY CPSL GIHD E
Sbjct:   33 VRRYMSPEELPFFPGFLPAPLLPPLDFPQILAPNSVNINDTLLKRYVAEVVPAICGAGDDEQHGSSVLCDINALQALSRRVHFGKFVAESKFQEDGDLYRNLCSEGNARGVNELLTNKAVEKKVIERALNKATAYAQE-----ITWEGAAGSR--FKVRPEAISAIYKDIIIPLTKDVEILYLFQRTGYTCPSLAGIHDSE 226          
BLAST of mRNA_S-dermatodea_contig13550.2059.1 vs. uniprot
Match: A0A4D9CWZ2_9STRA (Chorismate mutase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWZ2_9STRA)

HSP 1 Score: 227 bits (579), Expect = 1.690e-64
Identity = 127/221 (57.47%), Postives = 151/221 (68.33%), Query Frame = 3
Query:    3 VRRYMSLEELAFFPMFLPEPILPPLDFSRLLAPNNVNVNEEILRRYISEVVPMICEPGDDEQHGSSVVCDVNALQALSRRVHLGKFVAESKFQEDSRTYQALCRAGDVPGVLALLTNKAVEKKVLHRAFMKASTYGSDVNDPPILGEGAADEERNFKVDPHSIVAIYRDFVIPLTKDVEILYLFQRAGYPCPSLEGIHD*ERSRSPPPPAEG-SSYYDFKL 662
            VRRY S EE AFFP  LP+PIL PL F  LLAPN V+VN +IL  YI+EVVP +C+ GDDEQHGSSV+ D+  LQALSRR+HLGKFVAE+KFQED   Y+AL  A DV GV++LLTN AVE +VL RA +KASTYG D     I+GE  A      KV+P  I AIYRD +IPLTKDVE+LYLF+R G               R PP P  G +S+Y  ++
Sbjct:   71 VRRYTSPEEHAFFPEHLPDPILTPLQFPALLAPNTVDVNAQILHLYINEVVPAVCKEGDDEQHGSSVLADITLLQALSRRIHLGKFVAETKFQEDEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQD-----IMGETEA-----CKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVG---------------RKPPAPMPGPASHYRLRV 266          
BLAST of mRNA_S-dermatodea_contig13550.2059.1 vs. uniprot
Match: W7U1H9_9STRA (Chorismate mutase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U1H9_9STRA)

HSP 1 Score: 226 bits (575), Expect = 7.190e-62
Identity = 126/221 (57.01%), Postives = 151/221 (68.33%), Query Frame = 3
Query:    3 VRRYMSLEELAFFPMFLPEPILPPLDFSRLLAPNNVNVNEEILRRYISEVVPMICEPGDDEQHGSSVVCDVNALQALSRRVHLGKFVAESKFQEDSRTYQALCRAGDVPGVLALLTNKAVEKKVLHRAFMKASTYGSDVNDPPILGEGAADEERNFKVDPHSIVAIYRDFVIPLTKDVEILYLFQRAGYPCPSLEGIHD*ERSRSPPPPAEG-SSYYDFKL 662
            VRRY S EE AFFP  LP+PIL PL F  LLAPN V+VN +IL  YI+EVVP +C+ GDDEQHGSSV+ D+  LQALSRR+HLGKFVAE+KFQE+   Y+AL  A DV GV++LLTN AVE +VL RA +KASTYG D     I+GE  A      KV+P  I AIYRD +IPLTKDVE+LYLF+R G               R PP P  G +S+Y  ++
Sbjct:  237 VRRYTSPEEHAFFPEHLPDPILTPLQFPALLAPNTVDVNAQILHLYINEVVPAVCKEGDDEQHGSSVLADITLLQALSRRIHLGKFVAETKFQEEEAKYRALVGADDVDGVMSLLTNSAVEARVLARAKLKASTYGQD-----IMGETEA-----CKVEPDVIAAIYRDVIIPLTKDVEVLYLFERVG---------------RKPPAPLPGPASHYRLRV 432          
BLAST of mRNA_S-dermatodea_contig13550.2059.1 vs. uniprot
Match: A0A6U1P8R8_9STRA (Chorismate mutase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1P8R8_9STRA)

HSP 1 Score: 221 bits (562), Expect = 7.050e-61
Identity = 113/202 (55.94%), Postives = 139/202 (68.81%), Query Frame = 3
Query:    3 VRRYMSLEELAFFPMFLPEPILPPLDFSRLLAPNNVNVNEEILRRYISEVVPMICEPGDDEQHGSSVVCDVNALQALSRRVHLGKFVAESKFQEDSRTYQALCRAGDVPGVLALLTNKAVEKKVLHRAFMKASTYGSDVN---DPPILGEGAADEERNFKVDPHSIVAIYRDFVIPLTKDVEILYLFQRAGYPCPSLEGIHD 599
            VRRY S EE  FF   +P PILP L+F  LL P++VN+N  IL+RY+ EVVP IC  GDDEQ+GS+ + D+ ALQALSRR+H G FVAESKF ++   Y+AL RAGD  GV  LLTN +VE+ VL RAF KASTYG D+    DP         E   +KV+P  I  +Y+  +IPLTK+VE+LYLF+R G PCP L GIHD
Sbjct:  176 VRRYTSPEEYPFFADMIPPPILPLLNFPHLLQPHSVNLNHVILKRYVDEVVPRICSAGDDEQYGSTALADITALQALSRRIHYGLFVAESKFLDNPSQYEALVRAGDAKGVYDLLTNASVEELVLQRAFRKASTYGQDITATGDP---------ETTEYKVEPRIIRGLYKSVIIPLTKEVEVLYLFERVGCPCPDLSGIHD 368          
BLAST of mRNA_S-dermatodea_contig13550.2059.1 vs. uniprot
Match: A0A7S2SIA4_9STRA (Chorismate mutase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SIA4_9STRA)

HSP 1 Score: 192 bits (488), Expect = 3.860e-51
Identity = 94/188 (50.00%), Postives = 128/188 (68.09%), Query Frame = 3
Query:    6 RRYMSLEELAFFPMFLP-EPILPPLDFSRLLAPNNVNVNEEILRRYISEVVPMICEPGDDEQHGSSVVCDVNALQALSRRVHLGKFVAESKFQEDSRTYQALCRAGDVPGVLALLTNKAVEKKVLHRAFMKASTYGSDVNDPPILGEGAADEERNFKVDPHSIVAIYRDFVIPLTKDVEILYLFQRAG 566
            RRYMS EE  FFP  L  +P+L PLD+  ++   ++N+N+EI+  YI +VVP IC+PGDD+Q+GSS +CD+  LQALSRR+H+GKFVAESKFQ +   +  L  A D+ G+  LLTN+ VE++V HRA +KA T+G D           +D +  FKV PH +  +YRD +IPLTK V++ YLF R G
Sbjct:   99 RRYMSPEEHPFFPQVLDIDPVLAPLDYPPVVISQDININDEIMSLYIDKVVPSICDPGDDQQYGSSALCDIACLQALSRRIHIGKFVAESKFQHEPELFTKLVEARDIEGINRLLTNELVEERVCHRARLKAVTFGQDA---------FSDTDVGFKVAPHKLFELYRDMIIPLTKQVQVRYLFDRVG 277          
BLAST of mRNA_S-dermatodea_contig13550.2059.1 vs. uniprot
Match: A0A0G4FZ06_9ALVE (Chorismate mutase n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FZ06_9ALVE)

HSP 1 Score: 194 bits (492), Expect = 1.240e-48
Identity = 103/201 (51.24%), Postives = 131/201 (65.17%), Query Frame = 3
Query:    3 VRRYMSLEELAFFPMFLPEPILPPLDFSRLLAPNNVNVNEEILRRYISEVVPMICEPGDDEQHGSSVVCDVNALQALSRRVHLGKFVAESKFQEDSRTYQALCRAGDVPGVLALLTNKAVEKKVLHRAFMKASTYGSDVNDPPILGEGAADEERNFKVDPHSIVAIYRDFVIPLTKDVEILYLFQRAGYPCPSLEGIHD*E 605
            +RRY S EE AFFP  LP PILPP     +L PN +N N +I   Y + ++P+IC  GDDE++GS+  CD+  LQALS+RVH GKFVAE+KFQED+ TY+ L    D  G+L  LTN+AVE+++L R   KASTYG DV         A D   +FKVDP  IVA YRDF+IP+TK+VE+ YL +R G    +  G H  E
Sbjct:   91 MRRYTSPEEHAFFPDDLPIPILPPKAVPEVLNPNLINYNAKIKSYYTNVLLPLICRSGDDEEYGSAATCDITCLQALSKRVHYGKFVAEAKFQEDTETYKQLIAGKDADGILEKLTNRAVEERLLDRVRQKASTYGRDVG-----MTCATDSTLHFKVDPEVIVAAYRDFIIPVTKEVEVDYLLERCGPLKVAFVGEHSSE 286          
BLAST of mRNA_S-dermatodea_contig13550.2059.1 vs. uniprot
Match: A0A0G2FBF1_9PEZI (Chorismate mutase n=9 Tax=Diaporthales TaxID=5114 RepID=A0A0G2FBF1_9PEZI)

HSP 1 Score: 182 bits (463), Expect = 1.960e-48
Identity = 99/193 (51.30%), Postives = 133/193 (68.91%), Query Frame = 3
Query:    3 VRRYMSLEELAFFPMFLPEPILPPLDFSRLLAPNNVNVNEEILRRYISEVVPMICEP--GDD-----EQHGSSVVCDVNALQALSRRVHLGKFVAESKFQEDSRTYQALCRAGDVPGVLALLTNKAVEKKVLHRAFMKASTYGSDVNDPPILGEGAADEERNFKVDPHSIVAIYRDFVIPLTKDVEILYLFQR 560
            +RRY S +E  FFP+ L +PILP +D+ ++L PN+VNVN++I R YI + +P +C     +D     E +GSS  CD+  LQALSRR+H GKFVAESKFQ D+ TY  + +AGD  G+ A +TN AVEK+VL R  +KA TYG+D    P +G GA  E+    VD  ++VA+Y+DFVIPLTK+VE+ YL QR
Sbjct:   76 IRRYESPDEYPFFPVSLNKPILPAIDYPKILHPNDVNVNDKIKRFYIDQFLPRVCPDFGREDRGVSLENYGSSATCDIAVLQALSRRIHFGKFVAESKFQSDTETYTRMIKAGDREGIGASITNAAVEKQVLERLKLKAQTYGTD----PSVGVGA--EQSKINVD--AVVAMYKDFVIPLTKEVEVEYLMQR 260          
BLAST of mRNA_S-dermatodea_contig13550.2059.1 vs. uniprot
Match: A0A4V5NJF2_9PEZI (Chorismate mutase n=1 Tax=Cryomyces minteri TaxID=331657 RepID=A0A4V5NJF2_9PEZI)

HSP 1 Score: 180 bits (457), Expect = 1.340e-47
Identity = 97/193 (50.26%), Postives = 128/193 (66.32%), Query Frame = 3
Query:    3 VRRYMSLEELAFFPMFLPEPILPPLDFSRLLAPNNVNVNEEILRRYISEVVPMIC-------EPGDDEQHGSSVVCDVNALQALSRRVHLGKFVAESKFQEDSRTYQALCRAGDVPGVLALLTNKAVEKKVLHRAFMKASTYGSDVNDPPILGEGAADEERNFKVDPHSIVAIYRDFVIPLTKDVEILYLFQR 560
            VRRY + +E  FFP  L  PILPPL++ ++L PNNVNVNE++ R YI  V+P  C        P   E +GS+  CDV  LQALSRRVH GKFVAE+KF+++   + AL RAGD  G+ A +T+  VEKKVL R  +KA TYG+D   P I  EG+       K++  ++VA+Y+D+VIPLTK+VE+ YL QR
Sbjct:   76 VRRYQAPDEYPFFPDALQTPILPPLNYPKILYPNNVNVNEKLKRSYIEHVLPAACAKFNREERPEAQENYGSAATCDVACLQALSRRVHFGKFVAEAKFRKEQERFVALIRAGDREGIGAAITDTKVEKKVLERLRLKAKTYGTD---PSIADEGSG------KINVDAVVAMYKDWVIPLTKEVEVEYLMQR 259          
BLAST of mRNA_S-dermatodea_contig13550.2059.1 vs. uniprot
Match: Q0CJD7_ASPTN (Chorismate mutase n=2 Tax=Aspergillus terreus TaxID=33178 RepID=Q0CJD7_ASPTN)

HSP 1 Score: 180 bits (456), Expect = 1.840e-47
Identity = 99/193 (51.30%), Postives = 127/193 (65.80%), Query Frame = 3
Query:    3 VRRYMSLEELAFFPMFLPEPILPPLDFSRLLAPNNVNVNEEILRRYISEVVPMIC------EPGD-DEQHGSSVVCDVNALQALSRRVHLGKFVAESKFQEDSRTYQALCRAGDVPGVLALLTNKAVEKKVLHRAFMKASTYGSDVNDPPILGEGAADEERNFKVDPHSIVAIYRDFVIPLTKDVEILYLFQR 560
            VRRY S +E  FFP  L EPIL PL + R+L  N+VNVNE I RRY+ +++P IC      + G+  E +GSS  CDVN LQALSRR+H GKFVAESKFQ+D  T+  L +A D  G+ A +TN AVE+KVL R  +KA TYG+D   P   G          K+D  ++VA+Y+++VIPLTK VE+ YL QR
Sbjct:   76 VRRYQSPDEYPFFPDVLEEPILQPLQYPRILHENDVNVNEIIKRRYVEDILPAICPKFGREDRGETQENYGSSATCDVNCLQALSRRIHFGKFVAESKFQKDPETFVKLIKAEDRAGIDAAITNAAVEQKVLERLALKAKTYGTDPAFPTEAGT---------KIDVDAVVAMYKEYVIPLTKVVEVEYLMQR 259          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13550.2059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ27_ECTSI2.800e-10682.93Chorismate mutase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A836CAA2_9STRA2.510e-7967.16Chorismate mutase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A4D9CWZ2_9STRA1.690e-6457.47Chorismate mutase n=1 Tax=Nannochloropsis salina C... [more]
W7U1H9_9STRA7.190e-6257.01Chorismate mutase n=1 Tax=Nannochloropsis gaditana... [more]
A0A6U1P8R8_9STRA7.050e-6155.94Chorismate mutase n=1 Tax=Fibrocapsa japonica TaxI... [more]
A0A7S2SIA4_9STRA3.860e-5150.00Chorismate mutase n=1 Tax=Rhizochromulina marina T... [more]
A0A0G4FZ06_9ALVE1.240e-4851.24Chorismate mutase n=1 Tax=Chromera velia CCMP2878 ... [more]
A0A0G2FBF1_9PEZI1.960e-4851.30Chorismate mutase n=9 Tax=Diaporthales TaxID=5114 ... [more]
A0A4V5NJF2_9PEZI1.340e-4750.26Chorismate mutase n=1 Tax=Cryomyces minteri TaxID=... [more]
Q0CJD7_ASPTN1.840e-4751.30Chorismate mutase n=2 Tax=Aspergillus terreus TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13550contigS-dermatodea_contig13550:1815..5836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.8
Seed ortholog evalue3.4e-90
Seed eggNOG ortholog2880.D7FQ27
Preferred nameARO7
KEGG rclassRC03116
KEGG koko:K01850
KEGG ReactionR01715
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG ModuleM00024,M00025
GOsGO:0000162,GO:0003674,GO:0003824,GO:0004106,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006558,GO:0006568,GO:0006570,GO:0006571,GO:0006576,GO:0006586,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009094,GO:0009095,GO:0009308,GO:0009309,GO:0009987,GO:0016053,GO:0016853,GO:0016866,GO:0017144,GO:0018130,GO:0019438,GO:0019752,GO:0034641,GO:0042401,GO:0042430,GO:0042435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044106,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046219,GO:0046394,GO:0046483,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902221,GO:1902223
EggNOG free text desc.chorismate mutase activity
EggNOG OGsCOG1605@1,KOG0795@2759
EC5.4.99.5
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionChorismate Mutase
Ec32 orthologEc-01_007700.1
Exons3
Model size2649
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13550.2059.1prot_S-dermatodea_contig13550.2059.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13550 1829..3789 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924288.914927-UTR-S-dermatodea_contig13550:1814..18281622924288.914927-UTR-S-dermatodea_contig13550:1814..1828Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13550 1815..1828 +
1694079153.5876849-UTR-S-dermatodea_contig13550:1814..18281694079153.5876849-UTR-S-dermatodea_contig13550:1814..1828Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13550 1815..1828 +
1622924288.9637036-UTR-S-dermatodea_contig13550:3789..58361622924288.9637036-UTR-S-dermatodea_contig13550:3789..5836Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13550 3790..5836 +
1694079153.6603243-UTR-S-dermatodea_contig13550:3789..58361694079153.6603243-UTR-S-dermatodea_contig13550:3789..5836Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13550 3790..5836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924288.9291496-CDS-S-dermatodea_contig13550:1828..19501622924288.9291496-CDS-S-dermatodea_contig13550:1828..1950Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13550 1829..1950 +
1694079153.6078458-CDS-S-dermatodea_contig13550:1828..19501694079153.6078458-CDS-S-dermatodea_contig13550:1828..1950Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13550 1829..1950 +
1622924288.9420576-CDS-S-dermatodea_contig13550:2615..27601622924288.9420576-CDS-S-dermatodea_contig13550:2615..2760Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13550 2616..2760 +
1694079153.6216378-CDS-S-dermatodea_contig13550:2615..27601694079153.6216378-CDS-S-dermatodea_contig13550:2615..2760Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13550 2616..2760 +
1622924288.953244-CDS-S-dermatodea_contig13550:3468..37891622924288.953244-CDS-S-dermatodea_contig13550:3468..3789Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13550 3469..3789 +
1694079153.643925-CDS-S-dermatodea_contig13550:3468..37891694079153.643925-CDS-S-dermatodea_contig13550:3468..3789Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13550 3469..3789 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13550.2059.1

>prot_S-dermatodea_contig13550.2059.1 ID=prot_S-dermatodea_contig13550.2059.1|Name=mRNA_S-dermatodea_contig13550.2059.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=196bp
MSLEELAFFPMFLPEPILPPLDFSRLLAPNNVNVNEEILRRYISEVVPMI
CEPGDDEQHGSSVVCDVNALQALSRRVHLGKFVAESKFQEDSRTYQALCR
AGDVPGVLALLTNKAVEKKVLHRAFMKASTYGSDVNDPPILGEGAADEER
NFKVDPHSIVAIYRDFVIPLTKDVEILYLFQRAGYPCPSLEGIHD*
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mRNA from alignment at S-dermatodea_contig13550:1815..5836+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13550.2059.1 ID=mRNA_S-dermatodea_contig13550.2059.1|Name=mRNA_S-dermatodea_contig13550.2059.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4022bp|location=Sequence derived from alignment at S-dermatodea_contig13550:1815..5836+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTCCGGCGCTACATGAGCCTGGAGGAGTTGGCGTTTTTCCCCATGTTC CTGCCGGAGCCGATTTTGCCACCGCTGGACTTTTCTCGGCTGCTGGCCCC GAACAACGTCAACGTGAACGAGGAAATACTCAGGCGGTGAGTTTTGGAAG TGTTGGTCTTACCGTAGGTGAAGCAGGGTGTCGGCGCAATCGGAACTGCG GCCGCCAGGTACTGCTGTGCGCGCTGCCGATGTCCCCTCCGTTGAAGCAG ATAAAAGAGTGTGGGTGTGTACACGAAACATAGCGCCGTTGATCATATAA TAGCTGTCCAACCCAATTTTATTTTTGGTCTAACGCCTCTATTAGTACTA TGACTAGTTGCAAGCCACGGCTGTCGCCCGTGAGGTGTGCGTTGGCAGGA CGATGTGCGAGTTATTTTTTTTTTTTTTTGTGGCGATCCACAGCAGGCGT ATCGCTACATATGCATTTGAAAATGTAAATCGTATCGGATTTAGCGTACC CAATCCGGCTTCAGTTTGAAAATGTGAAATCGTATGTAATTTAGTATGCC TACGCTTTGTTATAGTATACAAAAATGGTTGACTCTTGTATGAATTAATA AGGATACTTGTATGGAAGGAACGAATTAAATAGACGGAAATATGCAAGCA GTACATGTACAGTATTAATAAATAGTATTGGCGGACCGCTTTCGTTTTCG TTTTCGCTCGGTTCGCATGCAGCGAAACATTCCTCCGCTCCCGTCCTGAA CTAACTTGCCGGCGCTTGCTGTGGGACGCTTTCCTAAAACCCTCCCCGCA GGTACATTTCGGAGGTAGTGCCGATGATCTGCGAGCCGGGAGACGACGAG CAGCACGGATCTTCCGTAGTGTGCGATGTCAATGCGTTGCAGGCGCTCAG CCGTAGGGTGCACCTCGGCAAGTTCGTTGCTGAGAGCAAGTTTCAGGTGA GCAAAAGATGGCGGCTGCGTGGTTGGTGTCAAATTTTCCCTCCACAAGTG TCGGGGCTCTCTTGGAGCGTGGGTCCTGCTTTGCAGAGAGAAGAGCCGTT CTGTTCCGCGTGAGGTGTCCCCACGGAAAGCAGGTAAGCAGCAGTGTGCC GTTTGCGGCATCAAACTCCTCTGTAATATTCCAGATGGCGCGATAGGTTA AAGTTGGCATCAACAGGAATTATTCATTCTTACGGCGAAAAAAGTAAAAT GCTCGCTCTTGCCATAGCGCTCCTCCTCGCCCAAACGACAACTCAACCCG CGTTTGGTGGGATGCCTGCCTGATACACAGCTAGAAATTGCGCAATTCAG AAAAGGGCCCCGCCGAGACATTCCGCAGGTGTATCTCGTGGCCAAGGCTG TCGAACACCTTCGTCTACGTTCGCTGCTCATCGTCTCTCTCTCCCCTCGT TGTTCGTGCCTTATCTTGGCGAGTACTGTAGCGCTGTCGTAACGCCATCG GGTTTCCATATGATTGTCGGTCCCGATTTTGGTCCCAGTCTTTTATCGCT GCGATGGCCATGGCCCGGTTAGAGCTGCGAATCTGTTGCGTGCCTGATGC CGGCACAGTGTACACCCGGTCGTGACTGCTGTTATCGCCAACCATTCCCG TGCCTCTCCGTCAATCCGAACTCTGCTGTGTTGGGGCGCAAAATAAATAT TCAGGAGGACAGCCGCACGTACCAGGCGCTGTGCCGAGCGGGAGACGTTC CCGGCGTGCTGGCCCTGCTGACGAACAAAGCTGTCGAAAAGAAGGTGCTC CATCGAGCCTTCATGAAGGCCTCCACCTATGGCAGCGATGTGAACGACCC CCCGATTTTGGGCGAGGGGGCCGCTGATGAAGAGCGGAATTTTAAGGTGG ACCCGCACAGCATCGTGGCCATCTACAGAGACTTCGTCATCCCGCTCACC AAGGATGTGGAGATATTGTACCTTTTCCAGCGGGCAGGTTACCCTTGTCC GTCCCTCGAAGGGATACACGATTAGGAGCGCTCTCGTAGCCCCCCCCCCC CCGCCGAGGGCAGCTCGTATTATGATTTTAAGCTGACGCTTACTTTTGTT TAGTCGGGTTGTGGCCTCGCTGCGCTTTTTCCTGGTGTGGTGTCCAAATA ATCTGTTCGCTCGGGCATGTTTTGTTTTTCAGGCGTCAGAGAGGCTCGTC GAGTTGTTCTTTAAGCTGCGTTCACCCTGTTGATGTATGTTGACGGGGGC GCCGCGCCGTGTGCTTTGGCTTTGGTTTCACTTTGTTTGCGTCCGGACGC GCGCGATCTGTTTCGTGATGCCCATGCGAATCGCCCTACAGGAGTTTTAC TTCGCGCGCACGTCGTCTCGTCTTGGAAATATGACGTATTGACGGCTGTG GCGCTGGTGGGTTAGCCCCCCCCTGTCAAAGCTTGCCACAATAGGCATAT AATAGTTATTTTGTTAGTGAAATCCAAGGCCAGCGGGCCGTGCGGACAGA ATTAATTAGTTGTCGGGTTTTACTGTTCGCTTCATCGGGTCAGCTGCGGA CACTACTGCAGTACTGCTTGGGCAACGGTAGCGTTGGGTTGCTGCACCGT TGTTCCGGGAGTTGTGATCCTGCTTCTTGGGATAGGTTTAGCTTTTAGTT AGCTCCACGGACTCTAGTATGCCGTGTTATATATAGGGCACTTCCGTCAT ATAGGCAAACAAAGGTCGCTGTGGCAGTAAAATCTGCCGTCACCGCTGGA CAGCGCACATGGAATCAGGGCTTGGTGACGGCCTGGGCCGGCGACAGCTA TGCAGCCTCAAAAGGCAACCCGCAGGTCAGGTCTTGAAGCGAACCGGCCG TTATGTATCGTAGAACATGACTGCTTCTTCCCTTTCGCTTGTTGGGGCCA GCTTCGAACCAAAAGCAAGAAAGGGTAGCAACACGCTATAGTTTCCCACG TTTTTTTTTTGTTTTCGCGGGCTCCACCGACTCTTCTTCTGGCATACCGG TGCTAGCGCACGTTTTGGTGGCAGGCAAGCCTGTCGAGCCTGGGGCGGGC GCTGGGTGTCGTGGAGCCTTGAGAATACGGTACCATACACATATCAGTCG CTTAGCAGAGGTTTCTCCATACTTGTACACTATAAATATGCGGGAACATA TTTTGTAGGGTCTGGATGTCGTCGGGTCGCGGAAATACGTTACGGTACGC GTATTTGTCTATTAGGAGAGGTCCCTGCGTACAGAGAAAAGGGTTTCGTG CCCACAGTTTTCTGATTGGTCAAATTTTTGAAAGGAGAAATCTGATTGGC CGAATATTTTCGAAAGATGACTCACGTCATTCATGGCATTGACATCACTT TTGAGACGAAGGAACTTTTGGACATATATTCCGACAGTTTGTAAAATATT CTTTGAAAAAAATATTTCAAGGAAAAATCTCGAAATTTCTTATTTGGTGA TATGTATGATGATGATCAGTAGTTTTTCTCGGAAGCACGAATAGGACGAG TACTGTACTATAGAAGAACCTGTTGAATCATGCTATTATACGATACTGGC ATTTAGTGTTGATAAGGTTCCTTGTTGGGCGGTTGTGCATGGCATTGCGT ACTGGTACTGTCCTGTTGTCAGGCTTTCTTTGGTTCAGCGTTTTGCTTCA TGAAGGAGCGCATGGATGTGAATGTGACTACTCTATCATACCTTTAACCC TTTTGGGACTGAGCAGGTTTTCGGGATTAGGTCATCTGTGAGTATATACT GTAGCAGCCACGGTTCGGGTACTGTACCTGTTCTGTGGGAGGTCTAGTGC GGGCAGATGGCTATATAGTGTATAGTATATAGTAGCCACCGTTCGGGTAC TGTACCTGTTCCATGTGAGGGGTAGTATAGTGCGGGCAGATGGCCTGACA CCAAAAGTAGGCTCGGTCTCAAAAGGGTTAATAAGGCACGAGATCCCCCT TCACAGCACGGTTAAACTCCGACGAGGCGAACGCGCTCTGCCATATGCTA CTGGGGATGGGTGCATGTCTATTAATATTATACGACCCGTGTATGCGCAA TAAATTGGAATATTACCCTCTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13550:1815..5836+

>mRNA_S-dermatodea_contig13550.2059.1 ID=mRNA_S-dermatodea_contig13550.2059.1|Name=mRNA_S-dermatodea_contig13550.2059.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at S-dermatodea_contig13550:1815..5836+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGCCTGGAGGAGTTGGCGTTTTTCCCCATGTTCCTGCCGGAGCCGAT
TTTGCCACCGCTGGACTTTTCTCGGCTGCTGGCCCCGAACAACGTCAACG
TGAACGAGGAAATACTCAGGCGATGAGCCTGGAGGAGTTGGCGTTTTTCC
CCATGTTCCTGCCGGAGCCGATTTTGCCACCGCTGGACTTTTCTCGGCTG
CTGGCCCCGAACAACGTCAACGTGAACGAGGAAATACTCAGGCGGTACAT
TTCGGAGGTAGTGCCGATGATCTGCGAGCCGGGAGACGACGAGCAGCACG
GATCTTCCGTAGTGTGCGATGTCAATGCGTTGCAGGCGCTCAGCCGTAGG
GTGCACCTCGGCAAGTTCGTTGCTGAGAGCAAGTTTCAGGTACATTTCGG
AGGTAGTGCCGATGATCTGCGAGCCGGGAGACGACGAGCAGCACGGATCT
TCCGTAGTGTGCGATGTCAATGCGTTGCAGGCGCTCAGCCGTAGGGTGCA
CCTCGGCAAGTTCGTTGCTGAGAGCAAGTTTCAGGAGGACAGCCGCACGT
ACCAGGCGCTGTGCCGAGCGGGAGACGTTCCCGGCGTGCTGGCCCTGCTG
ACGAACAAAGCTGTCGAAAAGAAGGTGCTCCATCGAGCCTTCATGAAGGC
CTCCACCTATGGCAGCGATGTGAACGACCCCCCGATTTTGGGCGAGGGGG
CCGCTGATGAAGAGCGGAATTTTAAGGTGGACCCGCACAGCATCGTGGCC
ATCTACAGAGACTTCGTCATCCCGCTCACCAAGGATGTGGAGATATTGTA
CCTTTTCCAGCGGGCAGGTTACCCTTGTCCGTCCCTCGAAGGGATACACG
ATTAGGAGGACAGCCGCACGTACCAGGCGCTGTGCCGAGCGGGAGACGTT
CCCGGCGTGCTGGCCCTGCTGACGAACAAAGCTGTCGAAAAGAAGGTGCT
CCATCGAGCCTTCATGAAGGCCTCCACCTATGGCAGCGATGTGAACGACC
CCCCGATTTTGGGCGAGGGGGCCGCTGATGAAGAGCGGAATTTTAAGGTG
GACCCGCACAGCATCGTGGCCATCTACAGAGACTTCGTCATCCCGCTCAC
CAAGGATGTGGAGATATTGTACCTTTTCCAGCGGGCAGGTTACCCTTGTC
CGTCCCTCGAAGGGATACACGATTAG
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