mRNA_S-dermatodea_contig13547.2057.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13547.2057.1
Unique NamemRNA_S-dermatodea_contig13547.2057.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13547.2057.1 vs. uniprot
Match: D7FWT3_ECTSI (Sulfotransferase, C-terminal Sulfotransferase, N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT3_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.310e-6
Identity = 26/54 (48.15%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:  166 KCDENEKEAARRPFNTKRNSASMAMMWRTQMPEDENIAVWEVCESSLVMADLGY 327
            KC+EN ++AA+ P+ T+R+S++MA +WR+QMPED    VW+ C+ S VM ++ Y
Sbjct:  368 KCNENNQQAAKNPYGTRRHSSAMADLWRSQMPEDMVEIVWDACQDSGVMPEMDY 421
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13547.2057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWT3_ECTSI1.310e-648.15Sulfotransferase, C-terminal Sulfotransferase, N-t... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13547contigS-dermatodea_contig13547:3750..4929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1182
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924288.7804809-CDS-S-dermatodea_contig13547:3749..40851622924288.7804809-CDS-S-dermatodea_contig13547:3749..4085Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13547 3750..4085 +
1694079153.417904-CDS-S-dermatodea_contig13547:3749..40851694079153.417904-CDS-S-dermatodea_contig13547:3749..4085Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13547 3750..4085 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924288.7894633-UTR-S-dermatodea_contig13547:4085..49291622924288.7894633-UTR-S-dermatodea_contig13547:4085..4929Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13547 4086..4929 +
1694079153.496104-UTR-S-dermatodea_contig13547:4085..49291694079153.496104-UTR-S-dermatodea_contig13547:4085..4929Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13547 4086..4929 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13547.2057.1prot_S-dermatodea_contig13547.2057.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13547 3750..4085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13547.2057.1

>prot_S-dermatodea_contig13547.2057.1 ID=prot_S-dermatodea_contig13547.2057.1|Name=mRNA_S-dermatodea_contig13547.2057.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
AAYWAGRAGSSRGSLRGRHRLLANPVDVDGGEPAAVTANVTDSVAPGEGD
SPESIKCDENEKEAARRPFNTKRNSASMAMMWRTQMPEDENIAVWEVCES
SLVMADLGYDL*
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mRNA from alignment at S-dermatodea_contig13547:3750..4929+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13547.2057.1 ID=mRNA_S-dermatodea_contig13547.2057.1|Name=mRNA_S-dermatodea_contig13547.2057.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1180bp|location=Sequence derived from alignment at S-dermatodea_contig13547:3750..4929+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCTTACTGGGCAGGCCGGGCAGGCTCATCCCGAGGATCCCTCAGGGG
GAGGCACCGCCTGCTTGCGAACCCCGTGGATGTCGACGGAGGCGAACCGG
CAGCCGTTACTGCGAACGTGACAGACAGCGTTGCCCCCGGAGAAGGGGAT
AGTCCCGAAAGCATCAAGTGCGACGAAAACGAGAAAGAAGCGGCAAGGAG
GCCCTTCAACACCAAACGGAACTCCGCGAGTATGGCGATGATGTGGCGGA
CTCAGATGCCTGAGGACGAGAACATAGCCGTTTGGGAAGTGTGCGAAAGC
TCACTTGTCATGGCCGACCTCGGATATGATCTGTAAGCGCAGGTGGATGT
GTTTGGTGTGTCGGTGCTATATACCCGTTGGGACATTCTTGTACCATACG
TGTATCAGCCGGCAGTGCGTGGTGTTTGGTGATATTTTGGTCGCACAGGA
CAAGAAAAGGGTGGTTTATTGGGGTTCACGCACCGGCAACGCGAACATGC
GCGAAGGAAGCCTTCTGGATAGCATTGCAGACATAATGCTTCCTACTCGA
CCATCGCTCGCACCGCCCTTTGATTGGTATTTGTAATAATAGCCCGGCAG
AAGGGCGTTGGTATCAGCGTGAGTTTTTACCGCTGGCGTAACGGGTCGAG
GGAATGAGGGAAGAAATTTTACTGCGTCGCTCCTCAAGCAATACGTTTCA
TTCGTATATACCATTGGTAAATATCTTGCACTTTACGTGTGAAGCAAGTC
ACATTGGCTAGGTCAACCCGCTGCGAGAAACATGGCTTGTTTTTGTTTTT
TTTTGTAGGTGCGTGGAAAGACGGTATATGTGGCGAACGACACGGCAATG
CAGCAGTCTAAATTTATGAACGTCGTTGAAGGAGTAACACGGGCTCCGTT
GCCGCGTGCCTTCGCGTGGAGAGGAGTCTGGTCGTAGTTTCTGTACTTCG
ATAGGAGGTATATGTAGTTGAGAAAAAATATTGTGGAAGATGGACGAGAT
GCAGAGAGACTGGGGGGAGGTGGAGTTCAGTAGGGACAAGAGACCACCAA
AATGCGGTGCAATAGCACACACAATCTCCTAGTTTCCTTTGGAGTGTAAC
GGCTGAACAAGTTAATACAAGCTTGCACCTAGACCTTATGGAGAGAGTAG
GGAAATACCTACTTTTGGTTTCTCCTGGAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13547:3750..4929+

>mRNA_S-dermatodea_contig13547.2057.1 ID=mRNA_S-dermatodea_contig13547.2057.1|Name=mRNA_S-dermatodea_contig13547.2057.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig13547:3750..4929+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGGCTTACTGGGCAGGCCGGGCAGGCTCATCCCGAGGATCCCTCAGGGG
GAGGCACCGCCTGCTTGCGAACCCCGTGGATGTCGACGGAGGCGAACCGG
CAGCCGTTACTGCGAACGTGACAGACAGCGTTGCCCCCGGAGAAGGGGAT
AGTCCCGAAAGCATCAAGTGCGACGAAAACGAGAAAGAAGCGGCAAGGAG
GCCCTTCAACACCAAACGGAACTCCGCGAGTATGGCGATGATGTGGCGGA
CTCAGATGCCTGAGGACGAGAACATAGCCGTTTGGGAAGTGTGCGAAAGC
TCACTTGTCATGGCCGACCTCGGATATGATCTGTAAGCGGCTTACTGGGC
AGGCCGGGCAGGCTCATCCCGAGGATCCCTCAGGGGGAGGCACCGCCTGC
TTGCGAACCCCGTGGATGTCGACGGAGGCGAACCGGCAGCCGTTACTGCG
AACGTGACAGACAGCGTTGCCCCCGGAGAAGGGGATAGTCCCGAAAGCAT
CAAGTGCGACGAAAACGAGAAAGAAGCGGCAAGGAGGCCCTTCAACACCA
AACGGAACTCCGCGAGTATGGCGATGATGTGGCGGACTCAGATGCCTGAG
GACGAGAACATAGCCGTTTGGGAAGTGTGCGAAAGCTCACTTGTCATGGC
CGACCTCGGATATGATCTGTAA
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