mRNA_S-dermatodea_contig13524.2051.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13524.2051.1
Unique NamemRNA_S-dermatodea_contig13524.2051.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13524.2051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13524contigS-dermatodea_contig13524:1376..2068 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_006810.1
Exons1
Model size693
Cds size693
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924288.4723303-CDS-S-dermatodea_contig13524:1375..20681622924288.4723303-CDS-S-dermatodea_contig13524:1375..2068Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13524 1376..2068 -
1694079153.2070174-CDS-S-dermatodea_contig13524:1375..20681694079153.2070174-CDS-S-dermatodea_contig13524:1375..2068Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13524 1376..2068 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13524.2051.1prot_S-dermatodea_contig13524.2051.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13524 1376..2068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13524.2051.1

>prot_S-dermatodea_contig13524.2051.1 ID=prot_S-dermatodea_contig13524.2051.1|Name=mRNA_S-dermatodea_contig13524.2051.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=231bp
MDGRPDPAEAQEMLGTLAELSAKLQRVTDAVEEAPVLASDGRRLGDAPED
DSYTTPRGLAVSALKVKNRKNAASACKRCLCFSETAEHMRERLGLLERLL
EHSENLRRATEDRTGGSSVIEKSTATSFPVASGVEPPGPTVASAGEERYP
APVEDGGRLEGDDSIDGGEMGQDEKGDGDKATEELLAATEAVWRISEMAR
EVLEGELDRRGEALSAAKTAAREAGEAISSQ
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mRNA from alignment at S-dermatodea_contig13524:1376..2068-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13524.2051.1 ID=mRNA_S-dermatodea_contig13524.2051.1|Name=mRNA_S-dermatodea_contig13524.2051.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=693bp|location=Sequence derived from alignment at S-dermatodea_contig13524:1376..2068- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGGTCGACCGGACCCCGCCGAGGCGCAGGAAATGCTCGGGACGCT
TGCCGAACTATCCGCGAAGTTGCAAAGGGTCACCGACGCGGTGGAGGAAG
CCCCCGTTCTTGCTTCGGATGGGCGGAGGCTAGGCGATGCACCAGAGGAC
GACTCCTACACAACCCCGCGTGGGCTGGCGGTCTCGGCGCTCAAGGTAAA
AAACAGAAAAAACGCGGCGTCCGCGTGCAAGCGGTGCCTGTGCTTCTCCG
AGACGGCGGAACACATGCGAGAGCGATTGGGACTACTGGAGCGCCTCCTG
GAACATTCCGAGAATCTCCGCCGGGCAACCGAGGACCGCACCGGTGGGTC
CAGCGTTATCGAGAAATCAACGGCGACGAGTTTCCCAGTGGCGTCGGGTG
TCGAGCCCCCGGGCCCGACAGTGGCTTCAGCGGGCGAAGAGAGATACCCG
GCCCCCGTTGAGGACGGAGGAAGGCTAGAAGGGGATGATAGCATCGACGG
CGGAGAGATGGGCCAAGACGAAAAGGGAGATGGCGATAAGGCAACGGAGG
AGTTGCTAGCGGCGACGGAAGCGGTGTGGCGAATCTCAGAGATGGCCCGA
GAGGTGCTCGAGGGGGAGTTGGATAGGAGAGGGGAGGCGTTGTCGGCAGC
AAAGACGGCGGCCAGGGAGGCCGGGGAAGCTATTTCTAGCCAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13524:1376..2068-

>mRNA_S-dermatodea_contig13524.2051.1 ID=mRNA_S-dermatodea_contig13524.2051.1|Name=mRNA_S-dermatodea_contig13524.2051.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at S-dermatodea_contig13524:1376..2068- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGGTCGACCGGACCCCGCCGAGGCGCAGGAAATGCTCGGGACGCT
TGCCGAACTATCCGCGAAGTTGCAAAGGGTCACCGACGCGGTGGAGGAAG
CCCCCGTTCTTGCTTCGGATGGGCGGAGGCTAGGCGATGCACCAGAGGAC
GACTCCTACACAACCCCGCGTGGGCTGGCGGTCTCGGCGCTCAAGGTAAA
AAACAGAAAAAACGCGGCGTCCGCGTGCAAGCGGTGCCTGTGCTTCTCCG
AGACGGCGGAACACATGCGAGAGCGATTGGGACTACTGGAGCGCCTCCTG
GAACATTCCGAGAATCTCCGCCGGGCAACCGAGGACCGCACCGGTGGGTC
CAGCGTTATCGAGAAATCAACGGCGACGAGTTTCCCAGTGGCGTCGGGTG
TCGAGCCCCCGGGCCCGACAGTGGCTTCAGCGGGCGAAGAGAGATACCCG
GCCCCCGTTGAGGACGGAGGAAGGCTAGAAGGGGATGATAGCATCGACGG
CGGAGAGATGGGCCAAGACGAAAAGGGAGATGGCGATAAGGCAACGGAGG
AGTTGCTAGCGGCGACGGAAGCGGTGTGGCGAATCTCAGAGATGGCCCGA
GAGGTGCTCGAGGGGGAGTTGGATAGGAGAGGGGAGGCGTTGTCGGCAGC
AAAGACGGCGGCCAGGGAGGCCGGGGAAGCTATTTCTAGCCAGATGGACG
GTCGACCGGACCCCGCCGAGGCGCAGGAAATGCTCGGGACGCTTGCCGAA
CTATCCGCGAAGTTGCAAAGGGTCACCGACGCGGTGGAGGAAGCCCCCGT
TCTTGCTTCGGATGGGCGGAGGCTAGGCGATGCACCAGAGGACGACTCCT
ACACAACCCCGCGTGGGCTGGCGGTCTCGGCGCTCAAGGTAAAAAACAGA
AAAAACGCGGCGTCCGCGTGCAAGCGGTGCCTGTGCTTCTCCGAGACGGC
GGAACACATGCGAGAGCGATTGGGACTACTGGAGCGCCTCCTGGAACATT
CCGAGAATCTCCGCCGGGCAACCGAGGACCGCACCGGTGGGTCCAGCGTT
ATCGAGAAATCAACGGCGACGAGTTTCCCAGTGGCGTCGGGTGTCGAGCC
CCCGGGCCCGACAGTGGCTTCAGCGGGCGAAGAGAGATACCCGGCCCCCG
TTGAGGACGGAGGAAGGCTAGAAGGGGATGATAGCATCGACGGCGGAGAG
ATGGGCCAAGACGAAAAGGGAGATGGCGATAAGGCAACGGAGGAGTTGCT
AGCGGCGACGGAAGCGGTGTGGCGAATCTCAGAGATGGCCCGAGAGGTGC
TCGAGGGGGAGTTGGATAGGAGAGGGGAGGCGTTGTCGGCAGCAAAGACG
GCGGCCAGGGAGGCCGGGGAAGCTATTTCTAGCCAG
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