mRNA_S-dermatodea_contig13518.2048.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13518.2048.1
Unique NamemRNA_S-dermatodea_contig13518.2048.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13518.2048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13518contigS-dermatodea_contig13518:2248..4521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1112
Cds size1110
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13518.2048.1prot_S-dermatodea_contig13518.2048.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13518 2248..4521 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924288.2757578-CDS-S-dermatodea_contig13518:2247..23551622924288.2757578-CDS-S-dermatodea_contig13518:2247..2355Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13518 2248..2355 +
1694079153.0728207-CDS-S-dermatodea_contig13518:2247..23551694079153.0728207-CDS-S-dermatodea_contig13518:2247..2355Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13518 2248..2355 +
1622924288.2841368-CDS-S-dermatodea_contig13518:2957..38441622924288.2841368-CDS-S-dermatodea_contig13518:2957..3844Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13518 2958..3844 +
1694079153.0830338-CDS-S-dermatodea_contig13518:2957..38441694079153.0830338-CDS-S-dermatodea_contig13518:2957..3844Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13518 2958..3844 +
1622924288.3057928-CDS-S-dermatodea_contig13518:4406..45211622924288.3057928-CDS-S-dermatodea_contig13518:4406..4521Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13518 4407..4521 +
1694079153.104009-CDS-S-dermatodea_contig13518:4406..45211694079153.104009-CDS-S-dermatodea_contig13518:4406..4521Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13518 4407..4521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13518.2048.1

>prot_S-dermatodea_contig13518.2048.1 ID=prot_S-dermatodea_contig13518.2048.1|Name=mRNA_S-dermatodea_contig13518.2048.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=370bp
MRRSSVYECEPCLNGFYIPVAWSSPHPCLGDTRHPEEPAEAGDTLETTAG
IESSGGIHCGTNQTTSESVTDDASVSREDSDAASAPSPSTDTFDAFSTSL
STNVASVLTLLILALTLVEIAALLMKLVALAQRAVSIVFTLARALATVLR
YSPWHDLVKIGTIMKTTLRFTVHATRRVSTGCCVAVVWMVAASALVFRSI
GTFVKVTIVSVYLGMLAFFPVVARGARAVLGGVYAGGKWALLMASTVVGL
SLVFAHAAIVTMLWVTKAFYAAFNAAFDAAFEAIRKGPHPAIKTLLEISD
TPAPEATNAFPLNPLASPERRPPSGPLASRNRGMINQGNACWMLSTVQFI
NAMPKLRALLVAYVQQATQN
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mRNA from alignment at S-dermatodea_contig13518:2248..4521+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13518.2048.1 ID=mRNA_S-dermatodea_contig13518.2048.1|Name=mRNA_S-dermatodea_contig13518.2048.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2274bp|location=Sequence derived from alignment at S-dermatodea_contig13518:2248..4521+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGAAGGAGTTCCGTGTACGAGTGCGAGCCGTGCCTGAACGGATTTTA
CATCCCCGTCGCGTGGTCTTCTCCTCACCCGTGCCTGGGTGACACCCGCC
ACCCGGAGGTACGGCCATCTGTTCAAACGGGTTATGTCCGACATATTTTT
TGTCATTTCCTTTGTGTGTGGCCGACGAACGAGCTACTGCTTGCCGTGCT
CCATTAAAATGTTGTCCCAATGCCGTACTACACAAAATGACGAAGAGGTC
TTTGAAAAAACGTGTGCTCGCCGTCGCTTCAAGGTTATGCGAGCACTCTT
ATCTCTAGCAACGATTCGCCTGGCCTTCTCTTCTCGTTGGAAGCTGATAG
TACACCGCGAGGCTCACGCGTTCTTGCCGAACACATATCCCCGATGGTTT
GCTTATTTCCATAACAATGAATAGTAAAAGAAAACTCGCCTCGCCTGTCT
ACAAGTTGCACTTTGTCGTTACCTTCCCACCTTCGGCATATGAGCTTCAC
AAAACTAAGCACTCCGTTCGCACCGGGGCAATAGCCTTCCCTCAATCCGG
TGGTTCTCATATGCGGGTACGTCATGCAGGGACTGCCACTGAACAGTATC
AAGTCTTCACGTTTATGCGTATAAGCGCAATTCCCGCATAGGAGACAATC
GTGACCAGGACCGTTTTGCGTGTATCCCGGCCAACCTTATGCGCCCCCCC
CTGCTCCTAGGAGCCAGCCGAAGCCGGGGACACGTTAGAGACTACGGCAG
GCATTGAGTCTTCAGGAGGAATTCACTGCGGAACGAACCAGACCACGTCC
GAATCCGTGACCGACGACGCCTCCGTCTCGCGGGAGGATTCAGATGCCGC
ATCGGCGCCATCGCCCTCAACGGATACCTTTGACGCGTTCTCGACCAGCC
TGTCGACAAACGTTGCGAGCGTACTGACACTGTTGATCCTTGCGCTAACG
CTGGTGGAGATAGCCGCGCTCCTCATGAAACTCGTCGCGCTGGCCCAAAG
AGCCGTGAGCATTGTGTTCACACTGGCCAGGGCTCTAGCGACGGTTCTCC
GCTACAGCCCCTGGCACGATTTGGTGAAGATCGGCACCATAATGAAAACG
ACCCTCCGGTTCACCGTCCACGCCACACGGCGCGTGTCGACGGGATGTTG
CGTGGCGGTAGTGTGGATGGTAGCCGCCAGCGCGCTAGTGTTCCGCTCAA
TCGGGACCTTTGTCAAGGTCACTATCGTGTCCGTCTACTTGGGCATGCTG
GCCTTTTTCCCTGTGGTCGCCCGAGGTGCGCGAGCAGTGCTCGGCGGGGT
CTACGCCGGCGGAAAGTGGGCCCTTCTGATGGCCTCGACAGTGGTTGGCC
TCTCGCTAGTATTTGCCCATGCGGCCATCGTTACCATGCTCTGGGTGACA
AAGGCCTTCTACGCCGCCTTCAACGCCGCCTTTGATGCCGCCTTTGAAGC
TATCCGCAAAGGGCCGCACCCGGCAATCAAAACTTTGCTCGAGATTTCTG
ACACGCCTGCTCCCGAGGCGACGAATGCCTTTCCACTGAACCCGCTCGCT
TCGCCGGAGCGGAGACCGCCGAGTGGCCCCTTGGCATCCCGCAACAGGTG
AGCGCGCAATTTTTCGTCCCCACGCGTGTCCCTATCTATTGTTGGCGCTG
GGGGCGTCTGGGCAAGACCAGGGCAATCGACCGCGAAACCTTGCCAACAC
ACTGCGTATAGCCAAATCACGAAGTACGCACTACCATGATCAATAGTTAG
TCAGACCATCGACATGGACCATTCTCCATACTGATATGCGTGATGCTGAT
ATGAGAAGGTTAAGCCTGTTTCAACAGTGTTTTTCACACCGCGCCAGTAC
TATAGATAGCAGCCGATAGGACGTTGGAGAAAAGGATCGAACGGAGTAAA
CAACGCATTGCACCAATCGATCGTTGCAAGTAGCAAGCGTAGCCCGACAC
CGCGCCCCGTGCCAGATCACACCGCAGACCCCGCAAGAGCAAATGCTGCC
ACGTATCCTTGAAGACTACAATAGTACCACAGCACTTGGATCCCTTTCCT
GGACAGATCACACAACGACCTTTCATGTCTGTGAAGTGTTCCAACTCGGT
GAGATTCACCCCCCCGCGCGCGCTCTTCCCGGAAACGTTCCGCATGTCAC
CCACACCAGGGGCATGATCAACCAAGGAAACGCATGCTGGATGTTGTCGA
CGGTGCAGTTCATCAACGCCATGCCAAAGCTGCGTGCGCTCCTCGTGGCC
TACGTCCAGCAGGCGACTCAGAAC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13518:2248..4521+

>mRNA_S-dermatodea_contig13518.2048.1 ID=mRNA_S-dermatodea_contig13518.2048.1|Name=mRNA_S-dermatodea_contig13518.2048.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2220bp|location=Sequence derived from alignment at S-dermatodea_contig13518:2248..4521+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGAAGGAGTTCCGTGTACGAGTGCGAGCCGTGCCTGAACGGATTTTA
CATCCCCGTCGCGTGGTCTTCTCCTCACCCGTGCCTGGGTGACACCCGCC
ACCCGGAGATGCGAAGGAGTTCCGTGTACGAGTGCGAGCCGTGCCTGAAC
GGATTTTACATCCCCGTCGCGTGGTCTTCTCCTCACCCGTGCCTGGGTGA
CACCCGCCACCCGGAGGAGCCAGCCGAAGCCGGGGACACGTTAGAGACTA
CGGCAGGCATTGAGTCTTCAGGAGGAATTCACTGCGGAACGAACCAGACC
ACGTCCGAATCCGTGACCGACGACGCCTCCGTCTCGCGGGAGGATTCAGA
TGCCGCATCGGCGCCATCGCCCTCAACGGATACCTTTGACGCGTTCTCGA
CCAGCCTGTCGACAAACGTTGCGAGCGTACTGACACTGTTGATCCTTGCG
CTAACGCTGGTGGAGATAGCCGCGCTCCTCATGAAACTCGTCGCGCTGGC
CCAAAGAGCCGTGAGCATTGTGTTCACACTGGCCAGGGCTCTAGCGACGG
TTCTCCGCTACAGCCCCTGGCACGATTTGGTGAAGATCGGCACCATAATG
AAAACGACCCTCCGGTTCACCGTCCACGCCACACGGCGCGTGTCGACGGG
ATGTTGCGTGGCGGTAGTGTGGATGGTAGCCGCCAGCGCGCTAGTGTTCC
GCTCAATCGGGACCTTTGTCAAGGTCACTATCGTGTCCGTCTACTTGGGC
ATGCTGGCCTTTTTCCCTGTGGTCGCCCGAGGTGCGCGAGCAGTGCTCGG
CGGGGTCTACGCCGGCGGAAAGTGGGCCCTTCTGATGGCCTCGACAGTGG
TTGGCCTCTCGCTAGTATTTGCCCATGCGGCCATCGTTACCATGCTCTGG
GTGACAAAGGCCTTCTACGCCGCCTTCAACGCCGCCTTTGATGCCGCCTT
TGAAGCTATCCGCAAAGGGCCGCACCCGGCAATCAAAACTTTGCTCGAGA
TTTCTGACACGCCTGCTCCCGAGGCGACGAATGCCTTTCCACTGAACCCG
CTCGCTTCGCCGGAGCGGAGACCGCCGAGTGGCCCCTTGGCATCCCGCAA
CAGGAGCCAGCCGAAGCCGGGGACACGTTAGAGACTACGGCAGGCATTGA
GTCTTCAGGAGGAATTCACTGCGGAACGAACCAGACCACGTCCGAATCCG
TGACCGACGACGCCTCCGTCTCGCGGGAGGATTCAGATGCCGCATCGGCG
CCATCGCCCTCAACGGATACCTTTGACGCGTTCTCGACCAGCCTGTCGAC
AAACGTTGCGAGCGTACTGACACTGTTGATCCTTGCGCTAACGCTGGTGG
AGATAGCCGCGCTCCTCATGAAACTCGTCGCGCTGGCCCAAAGAGCCGTG
AGCATTGTGTTCACACTGGCCAGGGCTCTAGCGACGGTTCTCCGCTACAG
CCCCTGGCACGATTTGGTGAAGATCGGCACCATAATGAAAACGACCCTCC
GGTTCACCGTCCACGCCACACGGCGCGTGTCGACGGGATGTTGCGTGGCG
GTAGTGTGGATGGTAGCCGCCAGCGCGCTAGTGTTCCGCTCAATCGGGAC
CTTTGTCAAGGTCACTATCGTGTCCGTCTACTTGGGCATGCTGGCCTTTT
TCCCTGTGGTCGCCCGAGGTGCGCGAGCAGTGCTCGGCGGGGTCTACGCC
GGCGGAAAGTGGGCCCTTCTGATGGCCTCGACAGTGGTTGGCCTCTCGCT
AGTATTTGCCCATGCGGCCATCGTTACCATGCTCTGGGTGACAAAGGCCT
TCTACGCCGCCTTCAACGCCGCCTTTGATGCCGCCTTTGAAGCTATCCGC
AAAGGGCCGCACCCGGCAATCAAAACTTTGCTCGAGATTTCTGACACGCC
TGCTCCCGAGGCGACGAATGCCTTTCCACTGAACCCGCTCGCTTCGCCGG
AGCGGAGACCGCCGAGTGGCCCCTTGGCATCCCGCAACAGGGGCATGATC
AACCAAGGAAACGCATGCTGGATGTTGTCGACGGTGCAGTTCATCAACGC
CATGCCAAAGCTGCGTGCGCTCCTCGTGGCCTACGTCCAGCAGGCGACTC
AGAACGGGCATGATCAACCAAGGAAACGCATGCTGGATGTTGTCGACGGT
GCAGTTCATCAACGCCATGCCAAAGCTGCGTGCGCTCCTCGTGGCCTACG
TCCAGCAGGCGACTCAGAAC
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