mRNA_S-dermatodea_contig13509.2045.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13509.2045.1
Unique NamemRNA_S-dermatodea_contig13509.2045.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13509.2045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13509contigS-dermatodea_contig13509:791..1579 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size789
Cds size405
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924288.1343153-CDS-S-dermatodea_contig13509:790..11951622924288.1343153-CDS-S-dermatodea_contig13509:790..1195Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13509 791..1195 +
1694079152.982221-CDS-S-dermatodea_contig13509:790..11951694079152.982221-CDS-S-dermatodea_contig13509:790..1195Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13509 791..1195 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924288.1504648-UTR-S-dermatodea_contig13509:1195..15791622924288.1504648-UTR-S-dermatodea_contig13509:1195..1579Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13509 1196..1579 +
1694079152.991848-UTR-S-dermatodea_contig13509:1195..15791694079152.991848-UTR-S-dermatodea_contig13509:1195..1579Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13509 1196..1579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13509.2045.1prot_S-dermatodea_contig13509.2045.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13509 791..1195 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13509.2045.1

>prot_S-dermatodea_contig13509.2045.1 ID=prot_S-dermatodea_contig13509.2045.1|Name=mRNA_S-dermatodea_contig13509.2045.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=135bp
RRRRGRTPTFDRFTGGGGVGGPRGVGVKVPWPVKIFAAAVIFYARFGREP
SLLPFLVLGTCHACRAGAFFSNAVNGTGGWGALPIQLSRCGCCFSGGFFV
PFKKMSRVICRVEQALPPWKDFPSGCGVPRAPLF*
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mRNA from alignment at S-dermatodea_contig13509:791..1579+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13509.2045.1 ID=mRNA_S-dermatodea_contig13509.2045.1|Name=mRNA_S-dermatodea_contig13509.2045.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=789bp|location=Sequence derived from alignment at S-dermatodea_contig13509:791..1579+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCAGGAGACGCGGCCGAACCCCGACCTTTGATCGCTTTACAGGGGGGGG
AGGGGTCGGAGGGCCTAGGGGGGTAGGGGTAAAAGTACCCTGGCCTGTGA
AAATCTTCGCTGCGGCTGTTATTTTTTACGCACGTTTTGGGAGAGAGCCG
TCGTTGTTGCCGTTTTTGGTTCTTGGAACGTGTCATGCATGCCGCGCGGG
TGCTTTTTTTTCAAACGCCGTGAATGGGACGGGGGGATGGGGTGCACTAC
CGATACAGCTGTCCCGCTGCGGTTGCTGTTTTTCTGGGGGGTTTTTCGTA
CCTTTTAAGAAAATGTCCAGAGTGATCTGCAGAGTAGAGCAGGCGCTGCC
GCCGTGGAAGGACTTCCCTAGTGGCTGCGGAGTGCCAAGAGCGCCATTGT
TTTAGACGTTGAAGGTCACGCACTCCTGCAGCTGTGGACTTAGGAGCGCT
CGCTGTTCTTCGCGGGCAGGGGGAAGGGGGGTTGCTGGAGATTATCCGTG
TTGGGTTCTCTCTGGCGCCTGTACAACTTAGAGCACGGTTTTGTGCCAGC
AAGAACGAGCCGGTGTGCCGGGACAGTGGTACAGAAGAGGTGGATGTTTC
TATGCATAGACTTGTCGACCGACTCGATTCGTCGATTGTTTCAGTCGGGA
AATGTTGCGTCTTTTTGTGTTTACCTTCTTTGTTTCCTTGACCCCCCCCC
CCCACCCCCCTAGTCTTCAAAGGGCGTATATTGGGGTCAGTTCGCCTTAT
CTTGGGCTCTCTACTTAATAAACAATGTTTTGACCCATC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13509:791..1579+

>mRNA_S-dermatodea_contig13509.2045.1 ID=mRNA_S-dermatodea_contig13509.2045.1|Name=mRNA_S-dermatodea_contig13509.2045.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at S-dermatodea_contig13509:791..1579+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCAGGAGACGCGGCCGAACCCCGACCTTTGATCGCTTTACAGGGGGGGG
AGGGGTCGGAGGGCCTAGGGGGGTAGGGGTAAAAGTACCCTGGCCTGTGA
AAATCTTCGCTGCGGCTGTTATTTTTTACGCACGTTTTGGGAGAGAGCCG
TCGTTGTTGCCGTTTTTGGTTCTTGGAACGTGTCATGCATGCCGCGCGGG
TGCTTTTTTTTCAAACGCCGTGAATGGGACGGGGGGATGGGGTGCACTAC
CGATACAGCTGTCCCGCTGCGGTTGCTGTTTTTCTGGGGGGTTTTTCGTA
CCTTTTAAGAAAATGTCCAGAGTGATCTGCAGAGTAGAGCAGGCGCTGCC
GCCGTGGAAGGACTTCCCTAGTGGCTGCGGAGTGCCAAGAGCGCCATTGT
TTTAGCGCAGGAGACGCGGCCGAACCCCGACCTTTGATCGCTTTACAGGG
GGGGGAGGGGTCGGAGGGCCTAGGGGGGTAGGGGTAAAAGTACCCTGGCC
TGTGAAAATCTTCGCTGCGGCTGTTATTTTTTACGCACGTTTTGGGAGAG
AGCCGTCGTTGTTGCCGTTTTTGGTTCTTGGAACGTGTCATGCATGCCGC
GCGGGTGCTTTTTTTTCAAACGCCGTGAATGGGACGGGGGGATGGGGTGC
ACTACCGATACAGCTGTCCCGCTGCGGTTGCTGTTTTTCTGGGGGGTTTT
TCGTACCTTTTAAGAAAATGTCCAGAGTGATCTGCAGAGTAGAGCAGGCG
CTGCCGCCGTGGAAGGACTTCCCTAGTGGCTGCGGAGTGCCAAGAGCGCC
ATTGTTTTAG
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