mRNA_S-dermatodea_contig135.2041.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig135.2041.1
Unique NamemRNA_S-dermatodea_contig135.2041.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: D7FX84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX84_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 3.920e-39
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 1
Query:    1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVGEQ 255
            GR EVVATSYDLLR C  +LKK RF+ VIFDEYHTIKS++ MVSQAACEL+TKRVFGLTGTLIQNDMKELWFL+HLIDP++VGEQ
Sbjct:  578 GRYEVVATSYDLLRACVDRLKKQRFDAVIFDEYHTIKSATTMVSQAACELRTKRVFGLTGTLIQNDMKELWFLLHLIDPLAVGEQ 662          
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: A0A7S0WH70_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WH70_9CRYP)

HSP 1 Score: 79.7 bits (195), Expect = 4.460e-17
Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 1
Query:    1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVGEQVWADGGGE 279
            G +EV+  SY+  R  AG L +  +E V+FDE H IK++ A +++AA  L T R  GLTGTL+QNDMKEL   M   +P S+G   +   G E
Sbjct:   15 GEVEVLIASYETYRSLAGTLNQIEWEAVVFDEAHRIKNNKAALTEAAMRLTTMRRIGLTGTLLQNDMKELHCTMSWANPDSLGAWKFFKAGWE 107          
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: A0A0S7G528_9TELE (RAD26 n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7G528_9TELE)

HSP 1 Score: 79.7 bits (195), Expect = 3.540e-15
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVG 249
            GR+E+  T+Y+ LRIC  Q  K  +  V+ DE H IK+  + ++Q+  ELK K   GLTGT++QN+++ELW +M   +P  +G
Sbjct:  229 GRIEIALTTYETLRICLDQFNKINWSAVVVDEAHKIKNPESQITQSMKELKCKNRIGLTGTILQNNLEELWCVMDWANPGCLG 311          
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: A0A0S7G6Q7_9TELE (RAD26 (Fragment) n=5 Tax=Poeciliinae TaxID=586240 RepID=A0A0S7G6Q7_9TELE)

HSP 1 Score: 79.7 bits (195), Expect = 3.950e-15
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVG 249
            GR+E+  T+Y+ LRIC  Q  K  +  V+ DE H IK+  + ++Q+  ELK K   GLTGT++QN+++ELW +M   +P  +G
Sbjct:  229 GRIEIALTTYETLRICLDQFNKINWSAVVVDEAHKIKNPESQITQSMKELKCKNRIGLTGTILQNNLEELWCVMDWANPGCLG 311          
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: A0A3Q2GI15_CYPVA (ERCC excision repair 6 like 2 n=7 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2GI15_CYPVA)

HSP 1 Score: 78.6 bits (192), Expect = 1.040e-14
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVG 249
            GR+E+  T+Y+ LR+C  Q  K  + GVI DE H IK+ ++ ++QA  +L+ K   GLTGT++QN+++ELW +M    P  +G
Sbjct:  185 GRIEIALTTYETLRLCLDQFNKIDWFGVIVDEVHKIKNPNSQITQAMKQLRCKNRIGLTGTILQNNLEELWCVMDWAKPGCLG 267          
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: UPI0003F0A71C (putative DNA repair and recombination protein RAD26-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0A71C)

HSP 1 Score: 77.4 bits (189), Expect = 1.930e-14
Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 1
Query:    1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVGEQVWADGGGEKTHILILRGTVVNRSK 327
            G+L+V+ T+++ LR+    L +  +  V  DE H IK   A V+QA   L+TKR +GLTGT++QN+M ELW ++   +P  +G  V  D   + T   I+RG   + SK
Sbjct:   91 GKLDVILTTHETLRVSVDDLNRVNWSAVFVDEVHKIKEPMAKVTQAFKTLRTKRRYGLTGTILQNNMLELWCVLDWANPGCLGAYVDFDAEFQNT---IVRGQRFDASK 196          
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: G3JXY8_9CICH (Putative repair and recombination helicase RAD26L (Fragment) n=3 Tax=Cichlidae TaxID=8113 RepID=G3JXY8_9CICH)

HSP 1 Score: 77.4 bits (189), Expect = 2.480e-14
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVG 249
            GR+E+  T+Y+ LR+C  Q  K  + GV+ DE H IK+  + ++QA  EL+ K   GLTGT++QN+++ELW +M    P  +G
Sbjct:   98 GRVEIALTTYETLRLCLDQFNKIDWSGVVVDEAHKIKNPDSQITQAMKELRCKVRIGLTGTILQNNLEELWCVMDWAIPGCLG 180          
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: A0A3P8PZ00_ASTCA (Excision repair cross-complementation group 6-like 2 n=2 Tax=Haplochromini TaxID=319058 RepID=A0A3P8PZ00_ASTCA)

HSP 1 Score: 77.4 bits (189), Expect = 2.610e-14
Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVG 249
            GR+E+  T+Y+ LR+C  Q  K  + GV+ DE H IK+  + ++QA  EL+ K   GLTGT++QN+++ELW +M    P  +G
Sbjct:  208 GRVEIALTTYETLRLCLDQFNKIDWSGVVVDEAHKIKNPDSQITQAMKELRCKVRIGLTGTILQNNLEELWCVMDWAIPGCLG 290          
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: A0A3B3TJZ5_9TELE (ERCC excision repair 6 like 2 n=3 Tax=Poecilia TaxID=8080 RepID=A0A3B3TJZ5_9TELE)

HSP 1 Score: 77.4 bits (189), Expect = 2.610e-14
Identity = 33/83 (39.76%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVG 249
            GR+E+  T+Y+ LR+C  Q  K  +  V+ DE H IK+  + ++Q+  EL+ K   GLTGT++QN+++ELW +M   +P  +G
Sbjct:  205 GRVEIALTTYETLRLCLDQFNKINWSAVVVDEAHKIKNPESQITQSMKELRCKNRIGLTGTILQNNLEELWCVMDWANPGCLG 287          
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: A0A3B4ZVU9_9TELE (ERCC excision repair 6 like 2 n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B4ZVU9_9TELE)

HSP 1 Score: 77.4 bits (189), Expect = 2.620e-14
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVG 249
            GR+E+  T+Y+ LR+C  Q  K  + GV+ DE H IK+ ++ ++QA  +L+ K   GLTGT++QN+++ELW +M    P  +G
Sbjct:  235 GRVEIALTTYETLRLCLDQFNKIHWSGVVVDEAHKIKNPNSQITQAMKQLRCKIRIGLTGTILQNNLEELWCVMDWAVPGCLG 317          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX84_ECTSI3.920e-3982.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0WH70_9CRYP4.460e-1745.16Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A0S7G528_9TELE3.540e-1542.17RAD26 n=1 Tax=Poeciliopsis prolifica TaxID=188132 ... [more]
A0A0S7G6Q7_9TELE3.950e-1542.17RAD26 (Fragment) n=5 Tax=Poeciliinae TaxID=586240 ... [more]
A0A3Q2GI15_CYPVA1.040e-1442.17ERCC excision repair 6 like 2 n=7 Tax=Cyprinodon T... [more]
UPI0003F0A71C1.930e-1438.53putative DNA repair and recombination protein RAD2... [more]
G3JXY8_9CICH2.480e-1442.17Putative repair and recombination helicase RAD26L ... [more]
A0A3P8PZ00_ASTCA2.610e-1442.17Excision repair cross-complementation group 6-like... [more]
A0A3B3TJZ5_9TELE2.610e-1439.76ERCC excision repair 6 like 2 n=3 Tax=Poecilia Tax... [more]
A0A3B4ZVU9_9TELE2.620e-1440.96ERCC excision repair 6 like 2 n=1 Tax=Stegastes pa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig135contigS-dermatodea_contig135:294..620 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.2
Seed ortholog evalue5.5e-34
Seed eggNOG ortholog2880.D7FX84
KEGG koko:K11130,ko:K20098
KEGG Pathwayko03008,map03008
KEGG ModuleM00425
EggNOG free text desc.histone H2A-H2B dimer displacement
EggNOG OGsCOG0553@1,KOG0387@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924287.547613-CDS-S-dermatodea_contig135:293..6201622924287.547613-CDS-S-dermatodea_contig135:293..620Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig135 294..620 -
1694079152.4816518-CDS-S-dermatodea_contig135:293..6201694079152.4816518-CDS-S-dermatodea_contig135:293..620Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig135 294..620 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig135.2041.1prot_S-dermatodea_contig135.2041.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig135 294..620 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig135.2041.1

>prot_S-dermatodea_contig135.2041.1 ID=prot_S-dermatodea_contig135.2041.1|Name=mRNA_S-dermatodea_contig135.2041.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACEL
KTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVGEQVWADGGGEKTHILIL
RGTVVNRSK
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mRNA from alignment at S-dermatodea_contig135:294..620-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig135.2041.1 ID=mRNA_S-dermatodea_contig135.2041.1|Name=mRNA_S-dermatodea_contig135.2041.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at S-dermatodea_contig135:294..620- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGCGGCTCGAGGTGGTGGCGACCAGCTACGACCTGCTGCGCATCTGCGC GGGCCAGCTGAAAAAGGCGCGCTTCGAGGGCGTGATCTTCGACGAGTATC ACACCATCAAGTCCTCGAGCGCGATGGTGTCTCAGGCGGCGTGCGAGCTG AAGACGAAGCGCGTGTTCGGGCTGACGGGTACGCTGATCCAGAACGACAT GAAGGAGCTTTGGTTTCTGATGCACCTCATCGATCCGGTGTCCGTCGGGG AGCAGGTGTGGGCCGATGGTGGTGGGGAGAAAACCCATATATTAATATTA CGGGGGACCGTAGTTAACAGGTCCAAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig135:294..620-

>mRNA_S-dermatodea_contig135.2041.1 ID=mRNA_S-dermatodea_contig135.2041.1|Name=mRNA_S-dermatodea_contig135.2041.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig135:294..620- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGGCGGCTCGAGGTGGTGGCGACCAGCTACGACCTGCTGCGCATCTGCGC
GGGCCAGCTGAAAAAGGCGCGCTTCGAGGGCGTGATCTTCGACGAGTATC
ACACCATCAAGTCCTCGAGCGCGATGGTGTCTCAGGCGGCGTGCGAGCTG
AAGACGAAGCGCGTGTTCGGGCTGACGGGTACGCTGATCCAGAACGACAT
GAAGGAGCTTTGGTTTCTGATGCACCTCATCGATCCGGTGTCCGTCGGGG
AGCAGGTGTGGGCCGATGGTGGTGGGGAGAAAACCCATATATTAATATTA
CGGGGGACCGTAGTTAACAGGTCCAAAGGGCGGCTCGAGGTGGTGGCGAC
CAGCTACGACCTGCTGCGCATCTGCGCGGGCCAGCTGAAAAAGGCGCGCT
TCGAGGGCGTGATCTTCGACGAGTATCACACCATCAAGTCCTCGAGCGCG
ATGGTGTCTCAGGCGGCGTGCGAGCTGAAGACGAAGCGCGTGTTCGGGCT
GACGGGTACGCTGATCCAGAACGACATGAAGGAGCTTTGGTTTCTGATGC
ACCTCATCGATCCGGTGTCCGTCGGGGAGCAGGTGTGGGCCGATGGTGGT
GGGGAGAAAACCCATATATTAATATTACGGGGGACCGTAGTTAACAGGTC
CAAA
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