mRNA_S-dermatodea_contig13494.2039.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13494.2039.1
Unique NamemRNA_S-dermatodea_contig13494.2039.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13494.2039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13494contigS-dermatodea_contig13494:540..2201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size325
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924287.4353902-CDS-S-dermatodea_contig13494:539..6141622924287.4353902-CDS-S-dermatodea_contig13494:539..614Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13494 540..614 -
1694079152.4196086-CDS-S-dermatodea_contig13494:539..6141694079152.4196086-CDS-S-dermatodea_contig13494:539..614Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13494 540..614 -
1622924287.4488087-CDS-S-dermatodea_contig13494:1952..22011622924287.4488087-CDS-S-dermatodea_contig13494:1952..2201Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13494 1953..2201 -
1694079152.428339-CDS-S-dermatodea_contig13494:1952..22011694079152.428339-CDS-S-dermatodea_contig13494:1952..2201Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13494 1953..2201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13494.2039.1prot_S-dermatodea_contig13494.2039.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13494 540..2201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13494.2039.1

>prot_S-dermatodea_contig13494.2039.1 ID=prot_S-dermatodea_contig13494.2039.1|Name=mRNA_S-dermatodea_contig13494.2039.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=108bp
MGATTPPQWNAPRERKAMGRCPVQTPSRGNRAHRLPPAVSDKGGACVHRA
DRFCVHVERPGSRSDVCRYADERELLHSQTLSHHFYARDSTKADGGFLQS
RRPERSSG
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mRNA from alignment at S-dermatodea_contig13494:540..2201-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13494.2039.1 ID=mRNA_S-dermatodea_contig13494.2039.1|Name=mRNA_S-dermatodea_contig13494.2039.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1662bp|location=Sequence derived from alignment at S-dermatodea_contig13494:540..2201- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCGCGACGACGCCTCCCCAGTGGAACGCCCCTCGAGAACGCAAGGC
AATGGGGAGATGCCCCGTACAAACCCCCTCTCGAGGAAATCGAGCCCACC
GTCTTCCTCCTGCCGTCTCCGACAAAGGGGGAGCTTGTGTCCACCGCGCA
GACCGTTTCTGTGTGCATGTCGAACGACCGGGATCGCGTAGTGATGTGTG
TCGATACGCAGACGAGCGGGAGCTGCTGCACTCGCAAACCCTGTCACACG
TGAGTTGTTTGTTCGCGGAGGCGGGTTGGTGGGGGGGGTGGGTGTTAAGC
GCATGTCATATCCTTACGGCGGACATTGACCACGCGTCCCAACAATGCCG
GGATGGAGCCATATGCCGGATTTTTGTCGGCCAGGCTGCGTTTCGCAAGG
ATGATACCAGCTGGTGGTCATCGCCCTTGCGTTTGCGACGCCAAACGATA
GGCCATGGGTTGATTGTACATACCGGTTAACCAAATGTTACACATTCAGT
AGGCGTGACTGTACTCCAAGTACCGCAAAGGGACCTTGATCACCGTACGA
ATGCAGAACCACCGCACGCACACAATATACACGACTGTGTATGTGTGATA
CACTCGGACTAGAATCTGCTCAGAGTACTCCTGGCGGAGTACTACTCATA
AGTCAATGGTTGCTCCAGGGCGGTCCAACAATCCAATGGTCAGCTGTCAT
CCTTAAGAATGTCATGCGTTTCGCCCCTTTGGGGAGAAACAAGACTCTTC
GACCGGGGTCTCCGAGCTCACAGGACAGACTACATGAACAACCCCATACC
CTATAACTAGCAGTTTTACAGGTCCATGCCACAAGAGCCAACCCTATCTC
GACCAACCCCGCCTCCAACCGCAAAGGCAGGGGGGTTGTGGTTCTCAGTT
TAACACGGGTGGGGGGGGGGGCACAAGCTTCATCCCCTCCATGGCAACCC
CTCAAGCATGCGTGGTGTCTTGCGTACTGTACAGCAGGATTTGTTCCTCG
AAGACCGGCTAAGCCACATGTATGCACACAGTATGCATTCATGCGCTTAG
AGCAACTGGCACGCCGTCCCTCTGAGAGCCGTTGTCGCGCCATGCCGGGC
ATGGATCGTGATCGCCGCCGTTAATATGATTATTTTAGTGTGGATGGCAA
CAATGTGCTAATTTTTAGTGGGGATGAATTGAACTGGAATAAGCGGGCAG
AATTGGGGGGAGGGTACCTACCTTCCATCTCTGCAATCTACGATACCCCT
TGTCGGGGAGTCCAACACCCAGTGCAGGAAGGATGAAATAAACTCTAAGG
CAGAGTCGATTTGACACATACCATTCGCATGATACAGTATTGAAAGCAGT
AGATGGGTCTAAACCTGTTTTCAGGACAATGTTGCCCGCGACATGTTTCG
CATCGAGCGTCCTCATCGAATCTGGCAGCCGTTTCGAAAAAAACGCGTGA
TCAACAGGCACCCTGAATGAACCTTACTACTACCTACCGAGCGCGAGAGA
TGACCGTGATTCGACCCTTCATTTTGACTCCCCTCGAACTCCTTTCGTCT
GCTCTCTGCTGCTGCTGCTGGTGGGTGTATTCGTCAGCATTTTTATGCTC
GCGACAGCACGAAGGCAGATGGCGGCTTCCTACAATCAAGGCGCCCCGAG
CGCTCTTCCGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13494:540..2201-

>mRNA_S-dermatodea_contig13494.2039.1 ID=mRNA_S-dermatodea_contig13494.2039.1|Name=mRNA_S-dermatodea_contig13494.2039.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at S-dermatodea_contig13494:540..2201- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGCGCGACGACGCCTCCCCAGTGGAACGCCCCTCGAGAACGCAAGGC
AATGGGGAGATGCCCCGTACAAACCCCCTCTCGAGGAAATCGAGCCCACC
GTCTTCCTCCTGCCGTCTCCGACAAAGGGGGAGCTTGTGTCCACCGCGCA
GACCGTTTCTGTGTGCATGTCGAACGACCGGGATCGCGTAGTGATGTGTG
TCGATACGCAGACGAGCGGGAGCTGCTGCACTCGCAAACCCTGTCACACA
TGGGCGCGACGACGCCTCCCCAGTGGAACGCCCCTCGAGAACGCAAGGCA
ATGGGGAGATGCCCCGTACAAACCCCCTCTCGAGGAAATCGAGCCCACCG
TCTTCCTCCTGCCGTCTCCGACAAAGGGGGAGCTTGTGTCCACCGCGCAG
ACCGTTTCTGTGTGCATGTCGAACGACCGGGATCGCGTAGTGATGTGTGT
CGATACGCAGACGAGCGGGAGCTGCTGCACTCGCAAACCCTGTCACACCA
TTTTTATGCTCGCGACAGCACGAAGGCAGATGGCGGCTTCCTACAATCAA
GGCGCCCCGAGCGCTCTTCCGGACATTTTTATGCTCGCGACAGCACGAAG
GCAGATGGCGGCTTCCTACAATCAAGGCGCCCCGAGCGCTCTTCCGGA
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