mRNA_S-dermatodea_contig13488.2036.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13488.2036.1
Unique NamemRNA_S-dermatodea_contig13488.2036.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig13488.2036.1 vs. uniprot
Match: D8LC80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC80_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 1.030e-54
Identity = 85/131 (64.89%), Postives = 104/131 (79.39%), Query Frame = 1 
Query:    7 VESHSDRATFVHMYGPEPHPASPDINFDSGKLLPNFWSVTHQPLTYDDRLEAAKGIRDITHSDQVILPDYLPSNPYSELNQPVWCSYANGARPAVVISADGTIFFQQTWLNTDDLGIAIDAYWAQKGEGTW 399
            VE + D+A FVH+YGPEPHP  PD+NFD+G   PNFWSV  QP+ YD R+E AK IR ITH D+V+LPDYL  NPYS LNQPVWC+YANGARP+V++S+ G++F+QQ WL+T+ LG AID YW Q G GTW
Sbjct:  105 VEQYGDKAIFVHIYGPEPHPKPPDLNFDAGTFSPNFWSVHRQPVIYDVRVEKAKKIRSITHPDEVVLPDYLTGNPYSSLNQPVWCTYANGARPSVMVSSSGSVFYQQEWLSTEGLGNAIDGYWEQDGAGTW 235
[Close]
BLAST of mRNA_S-dermatodea_contig13488.2036.1 vs. uniprot
Match: A0A6H5JSG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG9_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 1.020e-52
Identity = 84/131 (64.12%), Postives = 102/131 (77.86%), Query Frame = 1 
Query:    7 VESHSDRATFVHMYGPEPHPASPDINFDSGKLLPNFWSVTHQPLTYDDRLEAAKGIRDITHSDQVILPDYLPSNPYSELNQPVWCSYANGARPAVVISADGTIFFQQTWLNTDDLGIAIDAYWAQKGEGTW 399
            VE + D+A FVH+YGPEPHP  PD+NFDSG   PN WSV  QP+ YD R+E AK IR ITH D+V+LPDYL  NPYS LNQPVWC+YANGARP+V++S+ G+IF+QQ W++T+ L  AID YW Q G GTW
Sbjct:  130 VEQYGDKAIFVHIYGPEPHPQPPDLNFDSGSFAPNAWSVYRQPVMYDVRVEKAKKIRSITHPDEVVLPDYLTGNPYSSLNQPVWCTYANGARPSVMVSSSGSIFYQQEWMSTEGLENAIDGYWEQDGAGTW 260
[Close]
BLAST of mRNA_S-dermatodea_contig13488.2036.1 vs. uniprot
Match: A0A6H5L0M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M4_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 3.250e-39
Identity = 65/128 (50.78%), Postives = 90/128 (70.31%), Query Frame = 1 
Query:    7 VESHSDRATFVHMYGPEPHPASPDINFDSGKLLPNFWSVTHQPLTYDDRLEAAKGIRDITHSDQVILPDYLPSNPYSELNQPVWCSYANGARPAVVISADGTIFFQQTWLNTDDLGIAIDAYWAQKGE 390
            VE++ DR TFVH+YGPEPHP +P  NFD G ++ ++WS   QP +Y+ RL     ++D+ H +Q I+PDY+P NPYS+L  P+WCSY  GARPA  I+ DGTIF+QQ WL+T DL   +D +   +G+
Sbjct:  140 VETYKDRVTFVHLYGPEPHPTAPATNFDHGVVVNSYWSTVPQPKSYEQRLAMVDRVKDLVHPEQAIIPDYMPGNPYSDLINPLWCSYGIGARPATAIAQDGTIFYQQEWLHTGDLANELDVFLEGRGD 267
[Close]
BLAST of mRNA_S-dermatodea_contig13488.2036.1 vs. uniprot
Match: D8LCJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ3_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 2.120e-37
Identity = 70/126 (55.56%), Postives = 87/126 (69.05%), Query Frame = 1 
Query:    7 VESHSDRATFVHMYGPEPHPASPDINFDSGKLLPNFWSVTHQPLTYDDRLEAAKGIRDITHSDQVILPDYLPSNPYSELNQPVWCSYANGARPAVVISADGTIFFQQTWLNTDDLGIAIDAYWAQK 384
            VE++  +ATFVH+YGPEPHPA P  NFD G     FWSV  Q  +YD+R   A+ I  + H  Q IL DYLP NPYSEL QPVWCSY+ GARP  V+S DG +FFQ+ W +++ +G AID YW Q+
Sbjct:  231 VEAYGGKATFVHLYGPEPHPAMPGTNFDIGTTWQAFWSVYPQATSYDERAAMAQRINRLIHPSQDILVDYLPGNPYSELIQPVWCSYSMGARPVTVVSPDGKLFFQRAWFHSEHVGRAIDEYWCQQ 356
[Close]
BLAST of mRNA_S-dermatodea_contig13488.2036.1 vs. uniprot
Match: A0A6H5KKN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN7_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 2.090e-35
Identity = 69/126 (54.76%), Postives = 86/126 (68.25%), Query Frame = 1 
Query:    7 VESHSDRATFVHMYGPEPHPASPDINFDSGKLLPNFWSVTHQPLTYDDRLEAAKGIRDITHSDQVILPDYLPSNPYSELNQPVWCSYANGARPAVVISADGTIFFQQTWLNTDDLGIAIDAYWAQK 384
            VE++  +ATFVH+YGPEPHPA P  NFD G     FWSV  Q   Y++R+  A+ I    H  Q IL DYLP NPYSEL QPVWCSY+ GARP  V+S DG +FFQ+ W +++ +G AID YW Q+
Sbjct:  261 VEAYGGKATFVHLYGPEPHPAMPGTNFDIGTTWQAFWSVFQQATRYEERVAMAQRIGRRIHPSQDILVDYLPGNPYSELIQPVWCSYSMGARPVTVVSPDGKLFFQRGWFHSEHVGRAIDEYWCQQ 386
[Close]
BLAST of mRNA_S-dermatodea_contig13488.2036.1 vs. uniprot
Match: A0A835Z1L4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L4_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.360e-28
Identity = 57/117 (48.72%), Postives = 73/117 (62.39%), Query Frame = 1 
Query:   34 FVHMYGPEPHPASPDINFDSGKLLPNFWSVTHQPLTYDDRLEAAKGIRDITHSDQVILPDYLPSNPYSELN-----QPVWCSYANGARPAVVISADGTIFFQQTWLNTDDLGIAIDA 369
            F H+ GPEPHP +PD NFDSG +  NFWS   Q  TYD R+  A+ + D  H +  +LPD LP  PY + +     QPVWCSYA+GAR AV+I  DG +   QTW +  D+  AI+A
Sbjct:  116 FAHLVGPEPHPITPDTNFDSGVVKVNFWSTVAQARTYDARVAMARAVADKVHPNAALLPDLLPDAPYGDGDAAAAAQPVWCSYAHGARTAVLIGTDGVVRLAQTWFHAGDMAAAIEA 232
[Close]
BLAST of mRNA_S-dermatodea_contig13488.2036.1 vs. uniprot
Match: A0A7S3K7C6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K7C6_9STRA)

HSP 1 Score: 111 bits (278), Expect = 9.730e-24
Identity = 54/128 (42.19%), Postives = 74/128 (57.81%), Query Frame = 1 
Query:    7 VESHSDRAT-FVHMYGPEPHPASPDINFDSGKLLPNFWSVTHQPLTYDDRLEAAKGIRDITHSDQVILPDYLPSNPYSEL-------NQPVWCSYANGARPAVVISADGTIFFQQTWLNTDDLGIAID 366
            VE+++++   F+H+ GPEPHP +PD+NFDSGK L N+WS   QP T+DDRL+ A+    + H   + L D L   P           NQP WC+   GAR A++I   GT+ F Q W    DL  A+D
Sbjct:  121 VETYANKGVRFIHLIGPEPHPITPDVNFDSGKQLMNYWSTIAQPKTWDDRLQVAQRTAALIHPRSLTLVDPLADAPTQHKEGTEGFKNQPTWCTLGLGARTAILIDQHGTVQFTQDWFRKSDLANALD 248
[Close]
BLAST of mRNA_S-dermatodea_contig13488.2036.1 vs. uniprot
Match: D7FZ87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ87_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 2.110e-16
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:  196 QVILPDYLPSNPYSELNQPVWCSYANGARPAVVISADGTIFFQQTWLNTDDLGIAIDAY 372
            Q ++PDY+P NPYSEL  P+WCSY  GARPA  I+ DGTIF+QQ WL+T DL   +D +
Sbjct:    3 QALIPDYMPGNPYSELINPLWCSYGLGARPATAIAQDGTIFYQQEWLHTGDLADELDVF 61
[Close]
BLAST of mRNA_S-dermatodea_contig13488.2036.1 vs. uniprot
Match: A0A7S2CPV9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPV9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 5.030e-14
Identity = 47/130 (36.15%), Postives = 68/130 (52.31%), Query Frame = 1 
Query:    1 AQVESHSDRATFVHMYGPEPHPASPDINFDSGKLLPNFWSVTHQPLTYDDRLEAAKG-IRDITHSDQVILPDYLPSNPYSELNQ-----PVWCSYANGARPAVVISADGTIFFQQTWLNTDDLGIAIDAY 372
            A V+ + D   FV++Y  EPHP SPD NFD+G  +   WS   Q  TY DR   AK  + D  H + ++L D L +    EL       PVWC+Y  G+R A +I  DG ++  Q W +   +  A++ +
Sbjct:   11 ALVDKYQDDFHFVNLYSTEPHPMSPDKNFDTGMNVQFDWSNFRQARTYKDRGYYAKTYLADDLHPENLLLIDNLANTKLPELEDMPEYNPVWCTYGPGSRMAFLIGQDGKLYNVQAWFHATTMAGAMEEH 140
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13488.2036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LC80_ECTSI1.030e-5464.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSG9_9PHAE1.020e-5264.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0M4_9PHAE3.250e-3950.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCJ3_ECTSI2.120e-3755.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKN7_9PHAE2.090e-3554.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z1L4_9STRA1.360e-2848.72Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S3K7C6_9STRA9.730e-2442.19Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
D7FZ87_ECTSI2.110e-1659.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CPV9_9STRA5.030e-1436.15Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13488contigS-dermatodea_contig13488:2690..6041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-20_004760.1
Exons2
Model size2572
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13488.2036.1prot_S-dermatodea_contig13488.2036.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13488 4731..5999 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924287.254971-UTR-S-dermatodea_contig13488:2689..47301622924287.254971-UTR-S-dermatodea_contig13488:2689..4730Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13488 2690..4730 -
1694079152.31853-UTR-S-dermatodea_contig13488:2689..47301694079152.31853-UTR-S-dermatodea_contig13488:2689..4730Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13488 2690..4730 -
1622924287.291184-UTR-S-dermatodea_contig13488:5999..60411622924287.291184-UTR-S-dermatodea_contig13488:5999..6041Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13488 6000..6041 -
1694079152.3446813-UTR-S-dermatodea_contig13488:5999..60411694079152.3446813-UTR-S-dermatodea_contig13488:5999..6041Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13488 6000..6041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924287.2678068-CDS-S-dermatodea_contig13488:4730..50631622924287.2678068-CDS-S-dermatodea_contig13488:4730..5063Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13488 4731..5063 -
1694079152.3273869-CDS-S-dermatodea_contig13488:4730..50631694079152.3273869-CDS-S-dermatodea_contig13488:4730..5063Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13488 4731..5063 -
1622924287.2815478-CDS-S-dermatodea_contig13488:5843..59991622924287.2815478-CDS-S-dermatodea_contig13488:5843..5999Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13488 5844..5999 -
1694079152.3371124-CDS-S-dermatodea_contig13488:5843..59991694079152.3371124-CDS-S-dermatodea_contig13488:5843..5999Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13488 5844..5999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13488.2036.1

>prot_S-dermatodea_contig13488.2036.1 ID=prot_S-dermatodea_contig13488.2036.1|Name=mRNA_S-dermatodea_contig13488.2036.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=163bp
MYGPEPHPASPDINFDSGKLLPNFWSVTHQPLTYDDRLEAAKGIRDITHS
DQVILPDYLPSNPYSELNQPVWCSYANGARPAVVISADGTIFFQQTWLNT
DDLGIAIDAYWAQKGEGTWGANDPGNGPKSASRKYNNQQANMAIEEKRSG
AKGKRGGIVTPP*
back to top

mRNA from alignment at S-dermatodea_contig13488:2690..6041-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13488.2036.1 ID=mRNA_S-dermatodea_contig13488.2036.1|Name=mRNA_S-dermatodea_contig13488.2036.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3352bp|location=Sequence derived from alignment at S-dermatodea_contig13488:2690..6041- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGCAGGTGGAATCCCACTCCGATCGAGCTACTTTCGTACACATGTACGG
GCCGGAACCCCACCCGGCATCCCCGGACATCAACTTCGATTCTGGAAAGC
TGTTGCCAAACTTTTGGAGCGTTACGCATCAGCCGCTCACGTACGACGAT
CGACTAGAGGCGGCCAAGGGCATTCGTGATATCACCCACTCGGATCAGGT
GCGATCCAACGTTGATGCCGCAGCATCAGTAAACAGCTTGGGTGTTCCGT
AGAGACTCGCGTCGCAGCAGGAATCGAACGCACCACACGTGCGTAGGAGA
ATATACTTGAAGGTCTACACTTAATTGTAGTATTTAGGTGATTGATTCGA
TACATTACATGAATATATCTCCTATTGCATGCACTGTAAATCCGCGATAT
TGGGGAGCCGCAAGAAAGCTGAACCGATGGCACTCTTTGATAAAAGAGGA
GTGCTGGGGGGGGGGTTTGGGACCCCAACGCTCGCTTTATGTTTCTGAAA
TCTTTATTTTTTTTTAGGGGGTTTGGGAGAAAATCGTGCTCGACCACAGT
TTTTTTTTTATCACAGCATTTTGAAGTGTAAACATTAAACATTGCACGAC
CATGCATCATCGTCGGCCTATTATTTGACGCTTGTCACATATTTCCGCCC
ACACTTGGATGTCGCCATTTTCATCTCAATCCCGCGCAAAAATAGTCACC
ACACAACACCTGGCGCAACGATGAAGTTCGACTCTGAGCGTCCAACGGTT
TTCGCGCGCTTGACATGCCACTCCCCCTCCTCTATCGGTTTGGCGTCGCA
AACGCAAGGATGATGGCTAACAGCTAGTATCATCCTTGTGAAACGCGGCC
TAGCCTGGCCGGCGAAATCTGTCCGTCTCGGCTTTGTTGGGACGTGCAGT
CTATACCCGTCAAGATACGACATGCGTTAAACGTAAGTACCCCCTCCCCC
CCCCCCCTTCCCCGCCGCCGCCTCCTAGGTTATCCTCCCAGACTACCTCC
CGAGCAACCCGTACAGCGAGCTCAACCAACCGGTCTGGTGCTCGTACGCT
AACGGAGCCCGCCCCGCCGTCGTCATCTCCGCAGACGGAACCATCTTCTT
CCAGCAGACTTGGTTGAACACCGACGATCTCGGAATCGCCATTGATGCGT
ACTGGGCGCAAAAGGGGGAGGGCACGTGGGGTGCCAACGACCCTGGAAAT
GGCCCCAAGAGCGCCTCTCGAAAATACAACAACCAGCAGGCCAATATGGC
TATCGAGGAAAAGCGAAGCGGAGCGAAGGGGAAGCGAGGGGGGATCGTGA
CACCACCGTAGCCGGCCCCGGCTGCCGGTCGCACCGGCGGTCTGTGATGA
TTCAGGGTCGGAGTTGCGCGGAGCCGTTACGATAAGGCATTGATCGTGTC
TGGACCAAGTGTATGGTGTTTCCTGGGGCACATGAGAGGTGTGGCGTGTA
CGAGTAGGACAGCCAAGGCTGCGTTGCGCTTGCTAGATACGTGATCGAGG
GAATAGGGTTTAGTGTGGGGGTGGCGGCTTGGGGCAGGCAGGCCCCCTGA
CAGCTGTAAGGCGATACAGAGCGCGTCTCCGGTTTAGCTGCTGATTTCGG
AGAGGACCACTACGTGCAATCTCTCGGGCGTGTATTGTTAGAAGCTAACA
TTGCTAATCAGCACTTTTGCGAAGAGCCACAGCAGCATTAACCGTGCGAG
CGTCAAGGCACCCACGTCACCACTCTGATGTGTGTGTAGTGTGTAGGGCC
TTTCTGTTTAGAGTGGCCGTTGTGTGTCGTGTGGGGCGTGCGACCTCGAA
ACAACTGATGTGCGTTTTTTTTGTAATACAAGATGCGTTGTGCGTATTCT
TCGTGTTGTGTGATTCGTTCCCAATTGAACGATAATTGTTTACTCTCTGT
ATACACGGTCTTGGGCTTTGGAAAAAGACCTTAACATAATATATAGGTAT
TTTTCCAAAGGTCTTGGGCGTACAAAATGCAGTGGAAGTTCTGCAGGGAA
TTTTCTGCAGGGAGACACATTTGTGATAGGTTTGAGAGTGGCAAGCAGTC
ACTGGTCACGTTGGATCACGTTGGATATATTCGTCGAATGGGGTCAATGT
CGAATGGTGTTTTTTTCACAGGGTAAAATGTTCAAGGGTAAACCTAGGCA
CAGCCTCGGGAATCTGAAGGGTTTTGTGCTCAGGATATTGCCGGCAACGG
CTGAAGTATCGAGTCAAAGCAGCACCCAGCCTTTTGTCGTCACGACTCCA
ATAATTAACGTTGATCCGTGATCGCGCTTCGAGACAAAGAGCACAAGGGC
TACTGCCTCCACCCAACAGAAACCCACAATCCTCATAATAAACGTCCCCA
TCCCGATCGCTGTTGCTGCATATATATATGGACGATCCTACGCATCACAA
TCCGGCAGAGGAGATCCCCCTCGCAAAATTGAAATATCCCCCCATCAGCC
CTAACAAGAATACGGGTTTTACATGCCTACTCCTCCAACCGCCACGAGAG
CGTGCCGCCTTGCTCACATCTGATAGAGCCAACACCACCACGTCGCACCA
CAATCACATCTCCCCGGTGCCGTCCTGACTAAAGAGGTGTGCCTTAGCTC
TTTATGTGCCAAAGCAGCTACGCTTACGAACACAATTAATTGATCCTTTC
AGGACTTGAGTCATTTTTTCCGAATATCGCCACTATCGTACGCATGAATC
GCAGAGACGGGCTCACGCACAATTGCACCACCGTGCACGCAAGCTAAGCA
CGGCAAGGCGGGTGCTTATCCTCATTTTTTTATCGCGGCTACGGCAAGGA
GTAGTAAAGTACTGTAGTAGCCACAGTTCGGTCACGGGGTGAACGTCACA
TACGGTGCACAGGCAGAAATTGTCTCGAAAGAGCGCTCAGTCCCAAAAGG
ATTAACGCCGCCCATGCCGCTCATCTCCCCGGCTGTCACCCTCGCGGCCA
CGACGTCTGTCATCACGAGCGTTGTCATCGCCGTACGACGCCGAGGTCTC
CCTGCCATTGCCACGGTGTCTATCCCCCCGCCCGGGCGACCTGCTCCGAT
TACCTATGTGTCTTGTACCGCGAGGTGATCCCGCCGGAGGACGCCGTGTA
TCACGAGTATCTCCGCGACCGGCTGGTGGGCTGTGACGCACGTTTCTTGC
GCTGTTGCGGTTATTCGCAGCAGGCCTGAGATCCCCCCTGCGAGGGCTGC
GGCTGCGGCTGGCATCTGAGTTGGCGCTGCCACTGCCGTTACTAGTACTG
CTGCTGCCGCTGCCGCTGCTGCTACTGCTGCTTCGGCTGCTGCTGCTCGC
CGACCGGCTTCTCTTCGCGCGTCCCGCTCGCCTCCGTTCGTCCCCTCCGT
CG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13488:2690..6041-

>mRNA_S-dermatodea_contig13488.2036.1 ID=mRNA_S-dermatodea_contig13488.2036.1|Name=mRNA_S-dermatodea_contig13488.2036.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at S-dermatodea_contig13488:2690..6041- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTACGGGCCGGAACCCCACCCGGCATCCCCGGACATCAACTTCGATTC
TGGAAAGCTGTTGCCAAACTTTTGGAGCGTTACGCATCAGCCGCTCACGT
ACGACGATCGACTAGAGGCGGCCAAGGGCATTCGTGATATCACCCACTCG
GATCAGATGTACGGGCCGGAACCCCACCCGGCATCCCCGGACATCAACTT
CGATTCTGGAAAGCTGTTGCCAAACTTTTGGAGCGTTACGCATCAGCCGC
TCACGTACGACGATCGACTAGAGGCGGCCAAGGGCATTCGTGATATCACC
CACTCGGATCAGGTTATCCTCCCAGACTACCTCCCGAGCAACCCGTACAG
CGAGCTCAACCAACCGGTCTGGTGCTCGTACGCTAACGGAGCCCGCCCCG
CCGTCGTCATCTCCGCAGACGGAACCATCTTCTTCCAGCAGACTTGGTTG
AACACCGACGATCTCGGAATCGCCATTGATGCGTACTGGGCGCAAAAGGG
GGAGGGCACGTGGGGTGCCAACGACCCTGGAAATGGCCCCAAGAGCGCCT
CTCGAAAATACAACAACCAGCAGGCCAATATGGCTATCGAGGAAAAGCGA
AGCGGAGCGAAGGGGAAGCGAGGGGGGATCGTGACACCACCGTAGGTTAT
CCTCCCAGACTACCTCCCGAGCAACCCGTACAGCGAGCTCAACCAACCGG
TCTGGTGCTCGTACGCTAACGGAGCCCGCCCCGCCGTCGTCATCTCCGCA
GACGGAACCATCTTCTTCCAGCAGACTTGGTTGAACACCGACGATCTCGG
AATCGCCATTGATGCGTACTGGGCGCAAAAGGGGGAGGGCACGTGGGGTG
CCAACGACCCTGGAAATGGCCCCAAGAGCGCCTCTCGAAAATACAACAAC
CAGCAGGCCAATATGGCTATCGAGGAAAAGCGAAGCGGAGCGAAGGGGAA
GCGAGGGGGGATCGTGACACCACCGTAG
back to top