mRNA_S-dermatodea_contig13485.2034.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13485.2034.1
Unique NamemRNA_S-dermatodea_contig13485.2034.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13485.2034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13485contigS-dermatodea_contig13485:1423..1956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924287.1494129-CDS-S-dermatodea_contig13485:1422..17641622924287.1494129-CDS-S-dermatodea_contig13485:1422..1764Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13485 1423..1764 +
1694079152.2623756-CDS-S-dermatodea_contig13485:1422..17641694079152.2623756-CDS-S-dermatodea_contig13485:1422..1764Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13485 1423..1764 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924287.158402-UTR-S-dermatodea_contig13485:1764..19561622924287.158402-UTR-S-dermatodea_contig13485:1764..1956Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13485 1765..1956 +
1694079152.271247-UTR-S-dermatodea_contig13485:1764..19561694079152.271247-UTR-S-dermatodea_contig13485:1764..1956Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13485 1765..1956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13485.2034.1prot_S-dermatodea_contig13485.2034.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13485 1423..1764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13485.2034.1

>prot_S-dermatodea_contig13485.2034.1 ID=prot_S-dermatodea_contig13485.2034.1|Name=mRNA_S-dermatodea_contig13485.2034.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=114bp
PQLKRHSDVNARPGWGQNETFFREPSAFACCQEERGLTRGTSKREGIVIR
HAPTQLSWLVTQVLDLRPQGPSALRLSLSRQSPRRLQPGATTPRRARIVT
RCLVGSEKPSTNR*
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mRNA from alignment at S-dermatodea_contig13485:1423..1956+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13485.2034.1 ID=mRNA_S-dermatodea_contig13485.2034.1|Name=mRNA_S-dermatodea_contig13485.2034.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=534bp|location=Sequence derived from alignment at S-dermatodea_contig13485:1423..1956+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCAACTCAAACGCCACTCAGACGTGAACGCCAGACCGGGATGGGGACA
AAATGAAACGTTTTTTCGCGAGCCGTCAGCGTTCGCATGCTGCCAAGAGG
AACGTGGCCTCACACGCGGTACGTCTAAGCGGGAGGGAATTGTAATCAGG
CACGCACCCACGCAGCTCTCGTGGTTAGTCACGCAGGTCCTCGACCTCCG
CCCCCAGGGGCCGTCTGCCTTGCGTCTCTCGCTGAGCAGACAAAGCCCCC
GCAGGTTGCAGCCCGGCGCTACTACGCCGCGACGCGCGCGAATAGTCACA
CGATGCCTCGTCGGTAGTGAAAAACCCAGCACCAACCGATGATCACTGTC
AGGCCCGGGCGGTTCGATTCATTGGTGCAGGCACGGGTGGCCGCAACAGG
AACAGAAGCACGAGGTGGGATAGATACCCCCCCCCCCAGTCTCACCATTG
GCAGAGTAGGAAGGAACCATTGGCCATCGGCGATCGATCGATCCCGTGTG
AACAATGCCCCGTCCTCTCGAGGACAGACGCGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13485:1423..1956+

>mRNA_S-dermatodea_contig13485.2034.1 ID=mRNA_S-dermatodea_contig13485.2034.1|Name=mRNA_S-dermatodea_contig13485.2034.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at S-dermatodea_contig13485:1423..1956+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCAACTCAAACGCCACTCAGACGTGAACGCCAGACCGGGATGGGGACA
AAATGAAACGTTTTTTCGCGAGCCGTCAGCGTTCGCATGCTGCCAAGAGG
AACGTGGCCTCACACGCGGTACGTCTAAGCGGGAGGGAATTGTAATCAGG
CACGCACCCACGCAGCTCTCGTGGTTAGTCACGCAGGTCCTCGACCTCCG
CCCCCAGGGGCCGTCTGCCTTGCGTCTCTCGCTGAGCAGACAAAGCCCCC
GCAGGTTGCAGCCCGGCGCTACTACGCCGCGACGCGCGCGAATAGTCACA
CGATGCCTCGTCGGTAGTGAAAAACCCAGCACCAACCGATGACCCCAACT
CAAACGCCACTCAGACGTGAACGCCAGACCGGGATGGGGACAAAATGAAA
CGTTTTTTCGCGAGCCGTCAGCGTTCGCATGCTGCCAAGAGGAACGTGGC
CTCACACGCGGTACGTCTAAGCGGGAGGGAATTGTAATCAGGCACGCACC
CACGCAGCTCTCGTGGTTAGTCACGCAGGTCCTCGACCTCCGCCCCCAGG
GGCCGTCTGCCTTGCGTCTCTCGCTGAGCAGACAAAGCCCCCGCAGGTTG
CAGCCCGGCGCTACTACGCCGCGACGCGCGCGAATAGTCACACGATGCCT
CGTCGGTAGTGAAAAACCCAGCACCAACCGATGA
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