mRNA_S-dermatodea_contig13478.2032.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13478.2032.1
Unique NamemRNA_S-dermatodea_contig13478.2032.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13478.2032.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13478contigS-dermatodea_contig13478:384..716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size303
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924287.0425599-UTR-S-dermatodea_contig13478:383..4131622924287.0425599-UTR-S-dermatodea_contig13478:383..413Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13478 384..413 +
1694079152.2119982-UTR-S-dermatodea_contig13478:383..4131694079152.2119982-UTR-S-dermatodea_contig13478:383..413Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13478 384..413 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924287.053135-CDS-S-dermatodea_contig13478:413..7161622924287.053135-CDS-S-dermatodea_contig13478:413..716Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13478 414..716 +
1694079152.2214131-CDS-S-dermatodea_contig13478:413..7161694079152.2214131-CDS-S-dermatodea_contig13478:413..716Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13478 414..716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13478.2032.1prot_S-dermatodea_contig13478.2032.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13478 414..716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13478.2032.1

>prot_S-dermatodea_contig13478.2032.1 ID=prot_S-dermatodea_contig13478.2032.1|Name=mRNA_S-dermatodea_contig13478.2032.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=101bp
MPSPPAAPPAPSYPNNLGLQTGSASSRRLHRLQSQPQLLYHSSCRDYPCR
CAQKMPEATACPDIADLQEVRVAVRWCAAGRWRRVLGLLAMSSTAGRASY
*
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mRNA from alignment at S-dermatodea_contig13478:384..716+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13478.2032.1 ID=mRNA_S-dermatodea_contig13478.2032.1|Name=mRNA_S-dermatodea_contig13478.2032.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at S-dermatodea_contig13478:384..716+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCGCCCCGCACACCACAGTACCGCTCCAATGCCGTCGCCACCTGCTGC
ACCACCGGCTCCAAGCTATCCGAACAATCTCGGCCTCCAAACGGGATCGG
CTTCGTCCCGCAGGCTCCATCGTCTGCAGTCACAGCCACAGCTGCTTTAT
CACTCAAGTTGCCGCGACTACCCATGTCGCTGTGCACAGAAGATGCCAGA
AGCGACGGCATGCCCCGATATCGCGGACCTGCAAGAAGTAAGGGTCGCCG
TGCGGTGGTGTGCAGCGGGGCGCTGGCGCCGTGTGCTCGGCTTGCTGGCG
ATGTCCTCCACTGCTGGGAGGGCTTCCTATTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13478:384..716+

>mRNA_S-dermatodea_contig13478.2032.1 ID=mRNA_S-dermatodea_contig13478.2032.1|Name=mRNA_S-dermatodea_contig13478.2032.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at S-dermatodea_contig13478:384..716+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCGTCGCCACCTGCTGCACCACCGGCTCCAAGCTATCCGAACAATCT
CGGCCTCCAAACGGGATCGGCTTCGTCCCGCAGGCTCCATCGTCTGCAGT
CACAGCCACAGCTGCTTTATCACTCAAGTTGCCGCGACTACCCATGTCGC
TGTGCACAGAAGATGCCAGAAGCGACGGCATGCCCCGATATCGCGGACCT
GCAAGAAGTAAGGGTCGCCGTGCGGTGGTGTGCAGCGGGGCGCTGGCGCC
GTGTGCTCGGCTTGCTGGCGATGTCCTCCACTGCTGGGAGGGCTTCCTAT
TAGATGCCGTCGCCACCTGCTGCACCACCGGCTCCAAGCTATCCGAACAA
TCTCGGCCTCCAAACGGGATCGGCTTCGTCCCGCAGGCTCCATCGTCTGC
AGTCACAGCCACAGCTGCTTTATCACTCAAGTTGCCGCGACTACCCATGT
CGCTGTGCACAGAAGATGCCAGAAGCGACGGCATGCCCCGATATCGCGGA
CCTGCAAGAAGTAAGGGTCGCCGTGCGGTGGTGTGCAGCGGGGCGCTGGC
GCCGTGTGCTCGGCTTGCTGGCGATGTCCTCCACTGCTGGGAGGGCTTCC
TATTAG
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