mRNA_S-dermatodea_contig13451.2028.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13451.2028.1
Unique NamemRNA_S-dermatodea_contig13451.2028.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig13451.2028.1 vs. uniprot
Match: D7FKX7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKX7_ECTSI)

HSP 1 Score: 232 bits (591), Expect = 1.840e-67
Identity = 162/234 (69.23%), Postives = 177/234 (75.64%), Query Frame = 1 
Query:    1 REEFLAESASSMVKSSSANGTTNANDLDDFKDGYGSDGGYXXXXGGGGXXDYG----GFXXXXXXXXXXXXXXXXXXXXXDVSVAPISLEDAFRDKPQTYEDLCRSHIEAFMRGTEKYAHETNLSKRVGAWQEKLEPLMRRQENRQAFDIHVYGQSVLSRVASALTPSERARAQKAVKGAKERVADKSTPSREE--KSEDVEPDLPLVDFGAVAGGKERYDVCRLFLASLQLVS 684
            RE+FL ESA           +   ND+    DGYGSDG Y    GGGG  DYG    G XXXXXXXXXXXXXXXXXXXXXD  VAPISLEDAFR+KPQTYEDLCR+HIEAFMRGTEKYAHET LSKRVGAWQEKLEPLM  QE RQAFDIH YGQSVLSRVAS LTP++RARA  A KG   +VAD +  S EE  +++  EPD+PLVDFG V  GKER+DVCRLFLASLQL +
Sbjct:  552 REDFLPESAPPD--------SAGMNDVGTDYDGYGSDGSYCSD-GGGGYADYGDQSDGGXXXXXXXXXXXXXXXXXXXXXDAGVAPISLEDAFRNKPQTYEDLCRNHIEAFMRGTEKYAHETQLSKRVGAWQEKLEPLMESQEKRQAFDIHAYGQSVLSRVASVLTPAQRARAHTAAKGVHPKVADDAAASPEEAVQADTAEPDVPLVDFGTVVAGKERFDVCRLFLASLQLAN 776
[Close]
BLAST of mRNA_S-dermatodea_contig13451.2028.1 vs. uniprot
Match: A0A6H5KBI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBI6_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 1.450e-62
Identity = 114/151 (75.50%), Postives = 128/151 (84.77%), Query Frame = 1 
Query:  238 VAPISLEDAFRDKPQTYEDLCRSHIEAFMRGTEKYAHETNLSKRVGAWQEKLEPLMRRQENRQAFDIHVYGQSVLSRVASALTPSERARAQKAVKGAKERVADKSTPSREE--KSEDVEPDLPLVDFGAVAGGKERYDVCRLFLASLQLVS 684
            VAPISLE AFR+KPQTYEDLCR+HIEAFMRGTEKYAHET LSKRVGAWQEKLEPLM  QE RQAFDIH YGQSVLSRVAS LTP++RARA  AVKG + ++AD S  S EE  +++  EP++PLVDFG V  GKER+DVCRLFLASLQL +
Sbjct:  497 VAPISLEGAFRNKPQTYEDLCRNHIEAFMRGTEKYAHETQLSKRVGAWQEKLEPLMESQEKRQAFDIHAYGQSVLSRVASVLTPAQRARAHTAVKGVQPKMADNSAGSPEEAVQADTAEPEVPLVDFGTVVAGKERFDVCRLFLASLQLAN 647
[Close]
BLAST of mRNA_S-dermatodea_contig13451.2028.1 vs. uniprot
Match: A0A836CG43_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG43_9STRA)

HSP 1 Score: 122 bits (305), Expect = 3.580e-28
Identity = 79/183 (43.17%), Postives = 100/183 (54.64%), Query Frame = 1 
Query:  244 PISLEDAFRDKPQTYEDLCRSHIEAFMRGTEK------------------------------------YAHETNLSKRVGAWQEKLEPLMRRQENRQAFDIHVYGQSVLSRVASALTPSERARAQKAVKGAKERVADKSTPSREEKSEDVEPDLPLVDFGAVAGGKERYDVCRLFLASLQLVS 684
            P+SL DAFRD PQTYEDLCRSHI+AFMRG E+                                    YA ET LS+RVGAWQ++LEPL+R Q  R AFD+   G +VL   ASA+    RA        A+ER+A  +       ++D    + +V FG V  G+ER+DVCR+FLASLQL +
Sbjct:  585 PLSLADAFRDAPQTYEDLCRSHIQAFMRGAEQAPVPAEAEHDAAMRRSTVLTRRKALSRLLAPQNGHAYAQETGLSRRVGAWQDRLEPLLREQSARAAFDMRACGDAVL---ASAVAVLPRA--------ARERLAAAADADAPPPTKDKAAAVDVVAFGRVVAGRERFDVCRMFLASLQLAN 756
[Close]
BLAST of mRNA_S-dermatodea_contig13451.2028.1 vs. uniprot
Match: A0A7S2RIG3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIG3_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.640e-25
Identity = 61/147 (41.50%), Postives = 93/147 (63.27%), Query Frame = 1 
Query:  238 VAPISLEDAFRDKPQTYEDLCRSHIEAFMRGTEKYAHETNLSKRVGAWQEKLEPLMRRQENRQAFDIHVYGQSVLSRVASALTPSERARAQKAVKGAKERVADKSTPSREEKSEDVEPDLPLVDFGAVAGGKERYDVCRLFLASLQL 678
            +API+L+DAFR  P++Y DLC++HI AF++G ++YAHET LS+RV  WQ +LEP++  Q  R+AFDIH+YG+ ++  +A+A +          VK  K     K  PS ++          ++ F ++   K  ++VCR+FLASLQL
Sbjct:  464 MAPIALDDAFRVAPKSYADLCQAHITAFLKGADQYAHETQLSRRVSEWQSRLEPVLAEQTQRRAFDIHLYGEEIIHDLATAGSLK--------VKSGK-----KGAPSNDK----------VIPFNSIVADKPHFEVCRMFLASLQL 587
[Close]
BLAST of mRNA_S-dermatodea_contig13451.2028.1 vs. uniprot
Match: A0A329RXK6_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RXK6_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.170e-23
Identity = 59/136 (43.38%), Postives = 85/136 (62.50%), Query Frame = 1 
Query:  277 PQTYEDLCRSHIEAFMRGTEKYAHETNLSKRVGAWQEKLEPLMRRQENRQAFDIHVYGQSVLSRVASALTPSERARAQKAVKGAKERVADKSTPSREEKSEDVEPDLPLVDFGAVAGGKERYDVCRLFLASLQLVS 684
            P TYE++CR H+ +FM GTEKY  ET+LSK+V  WQ+KL PL+++Q+ R  FDIH+YG+ ++ R+      +  A   K  K  K + A   + S EE+S        +V F  +  GK +++VCRLFLASLQL +
Sbjct:  549 PLTYEEICRQHLASFMSGTEKYVRETDLSKKVSDWQDKLSPLLKQQDTRPPFDIHLYGREIIGRLEEEQKNASLAMHSKTTKRDKNKRARLESASDEEES--------VVPFETLVDGKSQFEVCRLFLASLQLAN 676
[Close]
BLAST of mRNA_S-dermatodea_contig13451.2028.1 vs. uniprot
Match: A0A225X0F2_9STRA (Condensin-2 complex subunit H2 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X0F2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.550e-23
Identity = 61/143 (42.66%), Postives = 86/143 (60.14%), Query Frame = 1 
Query:  256 EDAFRDKPQTYEDLCRSHIEAFMRGTEKYAHETNLSKRVGAWQEKLEPLMRRQENRQAFDIHVYGQSVLSRVASALTPSERARAQKAVKGAKERVADKSTPSREEKSEDVEPDLPLVDFGAVAGGKERYDVCRLFLASLQLVS 684
            ED   D P TYE++CR H+ +FM GTEKY  ET+LSK+V  WQEKL PL+++Q+    FDIH YG+ ++ R+      S   + +K+ +  K + A     S +E+ E        V F  +  GK +Y+VCRLFLASLQL +
Sbjct:  502 EDDSTDGPLTYEEICRQHLASFMSGTEKYVRETDLSKKVSDWQEKLTPLLKQQDTHPPFDIHHYGREIIGRLEEEQKNSSLDKQRKSTRRDKNKRARVGQVSDDEERE-------AVPFETLVDGKSQYEVCRLFLASLQLAN 637
[Close]
BLAST of mRNA_S-dermatodea_contig13451.2028.1 vs. uniprot
Match: G5A917_PHYSP (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=G5A917_PHYSP)

HSP 1 Score: 107 bits (268), Expect = 2.860e-23
Identity = 61/137 (44.53%), Postives = 86/137 (62.77%), Query Frame = 1 
Query:  277 PQTYEDLCRSHIEAFMRGTEKYAHETNLSKRVGAWQEKLEPLMRRQENRQAFDIHVYGQSVLSRVASALTPSERARAQKAVKGAKERVADKSTPSREEK-SEDVEPDLPLVDFGAVAGGKERYDVCRLFLASLQLVS 684
            P TYE++CR H+ +FM GTEKY  ET+LSK+V  WQEKL PL+++Q+    FDIH+YG+ ++ R+A     S   +  K+ K       DK+  +R E  S+D E     V F  +  GK +++VCRLFLASLQL +
Sbjct:  502 PLTYEEICRQHLASFMSGTEKYVRETDLSKQVSDWQEKLTPLLKQQDAHPPFDIHLYGREIIERLAEEKKNSSLDKRSKSTK------RDKNKRARVEPVSDDEEKKKEAVPFETLVVGKSQFEVCRLFLASLQLAN 632
[Close]
BLAST of mRNA_S-dermatodea_contig13451.2028.1 vs. uniprot
Match: W2QP13_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2QP13_PHYPN)

HSP 1 Score: 105 bits (262), Expect = 6.370e-23
Identity = 59/136 (43.38%), Postives = 85/136 (62.50%), Query Frame = 1 
Query:  277 PQTYEDLCRSHIEAFMRGTEKYAHETNLSKRVGAWQEKLEPLMRRQENRQAFDIHVYGQSVLSRVASALTPSERARAQKAVKGAKERVADKSTPSREEKSEDVEPDLPLVDFGAVAGGKERYDVCRLFLASLQLVS 684
            P TYE++CR H+ +FM GTEKY  ET+LSK+V  WQ+KL PL+++Q+ R  FDIH YG+ ++ R+      S   +  K  K A+ + A  +T   EE++E        V F  +  GK +++VCRLFLASLQL +
Sbjct:  254 PLTYEEICRQHLASFMSGTEKYVRETDLSKKVSDWQDKLSPLLKQQDTRPPFDIHQYGREIIGRLEEEQKNSSLEKHTKTTKKAQNKRARLAT--EEEETE-------TVPFETLVDGKSQFEVCRLFLASLQLAN 380
[Close]
BLAST of mRNA_S-dermatodea_contig13451.2028.1 vs. uniprot
Match: H3GF21_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GF21_PHYRM)

HSP 1 Score: 105 bits (263), Expect = 1.510e-22
Identity = 59/139 (42.45%), Postives = 85/139 (61.15%), Query Frame = 1 
Query:  277 PQTYEDLCRSHIEAFMRGTEKYAHETNLSKRVGAWQEKLEPLMRRQENRQAFDIHVYGQSVLSRVAS---ALTPSERARAQKAVKGAKERVADKSTPSREEKSEDVEPDLPLVDFGAVAGGKERYDVCRLFLASLQLVS 684
            P TYE++CR H+ +FM GTEKY  ET+LSK+V  WQEKL PL+++Q+   AFDIH YG+ ++ R+     + +  + +RA +  K   +R      P  EE       ++  V F  + GGK  ++VCRLFLASLQL +
Sbjct:  892 PLTYEEICRQHLASFMSGTEKYVRETDLSKQVSDWQEKLTPLLKQQDAHPAFDIHHYGREIIDRLEEEQKSTSLDKHSRATRKDKATNKRARLDPVPEDEE-------EIETVPFETLVGGKSPFEVCRLFLASLQLAN 1023
[Close]
BLAST of mRNA_S-dermatodea_contig13451.2028.1 vs. uniprot
Match: D0N0Q7_PHYIT (Condensin-2 complex subunit H2, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N0Q7_PHYIT)

HSP 1 Score: 105 bits (262), Expect = 1.720e-22
Identity = 57/136 (41.91%), Postives = 82/136 (60.29%), Query Frame = 1 
Query:  277 PQTYEDLCRSHIEAFMRGTEKYAHETNLSKRVGAWQEKLEPLMRRQENRQAFDIHVYGQSVLSRVASALTPSERARAQKAVKGAKERVADKSTPSREEKSEDVEPDLPLVDFGAVAGGKERYDVCRLFLASLQLVS 684
            P TYE++CR H+  FM GTEKY  ET+LSK+V  WQ+KL PL+++Q+ R  FDIH+YG+ ++ R+      S  AR  K  +  K +    +T   E ++         V F  +  GK +++VCRLFLASLQL +
Sbjct:  461 PLTYEEICRQHLATFMSGTEKYVRETDLSKKVSDWQDKLSPLLKQQDTRPPFDIHLYGREIIGRLEEEQKNSSLARHSKTTQRDKNKRIRLATDDEESET---------VPFETLVDGKSQFEVCRLFLASLQLAN 587
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13451.2028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKX7_ECTSI1.840e-6769.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBI6_9PHAE1.450e-6275.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CG43_9STRA3.580e-2843.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2RIG3_9STRA2.640e-2541.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A329RXK6_9STRA1.170e-2343.38Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A225X0F2_9STRA1.550e-2342.66Condensin-2 complex subunit H2 n=1 Tax=Phytophthor... [more]
G5A917_PHYSP2.860e-2344.53Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
W2QP13_PHYPN6.370e-2343.38Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
H3GF21_PHYRM1.510e-2242.45Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
D0N0Q7_PHYIT1.720e-2241.91Condensin-2 complex subunit H2, putative n=2 Tax=P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13451contigS-dermatodea_contig13451:275..6249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score237.3
Seed ortholog evalue7.2e-60
Seed eggNOG ortholog2880.D7FKX7
Preferred nameNCAPH2
KEGG koko:K11490
GOsGO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000793,GO:0000796,GO:0000819,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006282,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007143,GO:0007275,GO:0007276,GO:0007292,GO:0008150,GO:0009893,GO:0009987,GO:0010032,GO:0010604,GO:0016043,GO:0016321,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030054,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0030261,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033077,GO:0042110,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044815,GO:0045132,GO:0045171,GO:0045321,GO:0045739,GO:0045935,GO:0046649,GO:0048285,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048583,GO:0048584,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051304,GO:0051306,GO:0051307,GO:0051309,GO:0051321,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0070192,GO:0071103,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047,GO:2001020,GO:2001022
EggNOG free text desc.chromosome condensation
EggNOG OGsKOG2359@1,KOG2359@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size684
Cds size684
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13451.2028.1prot_S-dermatodea_contig13451.2028.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13451 275..6249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924286.624301-CDS-S-dermatodea_contig13451:274..5861622924286.624301-CDS-S-dermatodea_contig13451:274..586Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13451 275..586 +
1694079151.86109-CDS-S-dermatodea_contig13451:274..5861694079151.86109-CDS-S-dermatodea_contig13451:274..586Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13451 275..586 +
1622924286.6402235-CDS-S-dermatodea_contig13451:2046..21441622924286.6402235-CDS-S-dermatodea_contig13451:2046..2144Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13451 2047..2144 +
1694079151.8735938-CDS-S-dermatodea_contig13451:2046..21441694079151.8735938-CDS-S-dermatodea_contig13451:2046..2144Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13451 2047..2144 +
1622924286.6494522-CDS-S-dermatodea_contig13451:3729..38561622924286.6494522-CDS-S-dermatodea_contig13451:3729..3856Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13451 3730..3856 +
1694079151.9063363-CDS-S-dermatodea_contig13451:3729..38561694079151.9063363-CDS-S-dermatodea_contig13451:3729..3856Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13451 3730..3856 +
1622924286.6625695-CDS-S-dermatodea_contig13451:6102..62491622924286.6625695-CDS-S-dermatodea_contig13451:6102..6249Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13451 6103..6249 +
1694079151.9319408-CDS-S-dermatodea_contig13451:6102..62491694079151.9319408-CDS-S-dermatodea_contig13451:6102..6249Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13451 6103..6249 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13451.2028.1

>prot_S-dermatodea_contig13451.2028.1 ID=prot_S-dermatodea_contig13451.2028.1|Name=mRNA_S-dermatodea_contig13451.2028.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=228bp
REEFLAESASSMVKSSSANGTTNANDLDDFKDGYGSDGGYSSDGGGGGGG
DYGGFSDAEGGGYMDAGGGRDGEGGGDVSVAPISLEDAFRDKPQTYEDLC
RSHIEAFMRGTEKYAHETNLSKRVGAWQEKLEPLMRRQENRQAFDIHVYG
QSVLSRVASALTPSERARAQKAVKGAKERVADKSTPSREEKSEDVEPDLP
LVDFGAVAGGKERYDVCRLFLASLQLVS
back to top

mRNA from alignment at S-dermatodea_contig13451:275..6249+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13451.2028.1 ID=mRNA_S-dermatodea_contig13451.2028.1|Name=mRNA_S-dermatodea_contig13451.2028.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5975bp|location=Sequence derived from alignment at S-dermatodea_contig13451:275..6249+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCGAGGAGTTCCTCGCCGAATCGGCGTCGTCCATGGTGAAATCATCCTC
CGCCAACGGCACCACCAACGCTAACGACTTGGACGACTTCAAAGATGGCT
ACGGCTCGGACGGGGGCTACAGCAGCGACGGGGGCGGGGGCGGGGGAGGA
GACTACGGCGGGTTTAGCGACGCGGAAGGCGGGGGGTACATGGATGCCGG
GGGGGGCCGTGACGGAGAGGGAGGGGGTGACGTCAGCGTGGCCCCGATAT
CTCTGGAGGATGCTTTCCGCGACAAGCCGCAGACGTACGAGGACCTCTGC
CGGAGCCATATCGTGAGTGCTGTGGGTGGAGGGATGTGGGTGGGTGGGTG
GCTGGGTGTGGGTGAGTATGTGGTTGCGGTGGTGTTCTCTGTTGATGCTA
TTACGGAGGTACACTATAATCAAGTAATACAGTATAATCAAGTAATACAC
TATAATCAAGTAATACACTATCATCAAGTAATACACTATCATCAAGTAAT
ACACTATCATCAAGTAATACACTATAGTCAAGTAATAAAGTAATCAGGAC
CAAATCTCATGAATAAAAAACAAGACGAGGCCTGGCCTACCCTATTAATA
CCCTATTAATACCCTTAGAGTATGATACAAACACCTATAGTACCGTTAAT
ACACTATTAATATTATAATACCCAATCGTTCCGGGATATTGTTTTTCGCT
AAGTTAAGATTTGTGACTATGAATAATTTGGACTTGTTTACTATCATATG
GTCCTCGGTAATAAATGTGTAAAGAAACAGAGGGTATAAATCGCACTATC
CATGACTATTGCGGAGTCGGACAGCAGTAATATCAGTATAGTATTATAGT
ATTAATAGTGATCGGGACCAAATGCGGCAAACAGCTATTAATATTATATT
ACAGTATAGTGTATCCAACATCATGACGTATGATACCATAAATCAATATG
GTCTGGCCTTACTATATACTATATACTCCGGAGTACTATATACTGTACAG
CATCTGAGATGTCCAAAAGTCACTATTAATAAGTAAATTTTGTTAACAAG
GTGTTAAGGCCATTGTTTACAAGACTTGAACACGCTTGTGTTATTATTAT
TATTACTATTCATATTATTATTATTATTGTTATTATTATCACACAAACAA
CCGACCGGCCAACCAATGGTGGCCGATCCCACTCGTGGTCAGATGAGAAA
AATCGAGAGATGGAGAAAAAAAAACTACGGAAATCACCTATATATAGTAC
ATACAAAAAAGGAATTGACGTAAAGTAACTCTATTAATAGGAAACAGACG
GGGTCATGGCATGCCTCGGAAGTTGGGCCTGCTAAGAAAAAAAAACAAAA
CAGATAGAAGAACTATCCCCTCTCCTAGAGCAGGCAAGGTGTGTTGAGGA
CAATTTGACTCTGATTCCTGTTCACCTCCGTGGCATTTACATACTGTATC
GTTACATATTGTATGTATTGTATTGTATTGCAAATCCTTATGATGCTGCA
TAGGTAATTCCGTAGTTTTTTTTTCCGATTGCCCTATTTTTTATCCGATC
ACGAGCGAATTCAGCAACCAATTGGCGGGCCTGGCCATTCGGTTGTAAGT
GTGACAATCAAATCAACGACCTCTTTTACCCCGCTACTGCTGTACTGACT
CTGTATATATTAATATTAATATTAATTGTGTGTTACAAAAAAGTTTCAAA
ATAAGTCGTATTCACCTGTACACTCCTAACGTAACGTTTCCGCTAACGGG
CACGGTTTTGCTCGGCGATCAGGAGGCGTTTATGCGTGGAACCGAGAAGT
ACGCGCACGAGACAAACCTCTCCAAACGGGTCGGCGCGTGGCAGGAGAAG
CTCGAGCCGCTCATGCGCAGGTAAGCTCACACGTCCCATTGATGGATTCC
TTTTCTTTCTTGATTGGTTGATTGATTTGTTGATTGCTGTATTGATTACT
TTTTGCTTGTTGTTTCTGGATTTGTTGGTTAATTTGTCGATTGATTTGTT
GAGTGATTGAGTGATTGATTGAGTGCTGGATTGATTGATTGATTGATTGA
TGGAGTGATTTCACGCTTGAAGCCGATCGGCTCTATCCGGCTCTACTTAT
GGTCAGATGCGCGAATCGAATCGTCAGGGGCGGGGAAAACTAAAAAGCAG
AAATATGCCAGGCTATGCAATTGTGCTGGCGTGATGACGATGCAGAGGGG
TATCGCTGACACGGGCGGGCGCCGAAAGCACTGAGACCACTGCTGTGGCA
TGCTCTTGGAGCGTTCAGGTTTTGGTGTATTCTCCAGAGCAATCTCCAGA
GCAATGCAGCCAGCTTGTGGGGGCACGTGTACGCCCCACCTGCCGCGTAA
GCCAATTTTTGGGGTTTAATCGCGTTCAGCACCCTCTTGCCGAGTGCATC
CCACCAACTAAACCAGTTCTGCACACTCTACAGCTGCCTTAGGCGTATCG
GCCACATCAACATCTTCCTATACGATTTTTAAGGCCGATTTGTTTTAGGC
CGCTTTTGTACACTAAACTCCTGTACGATTTTGAGGCCAAACTACTTGAT
GTTTGCCTTTGTGTTGAGCACTAGGTGTTGAAAATAGTAGATCTTTTTCC
CTCACGGGCGTGTAGCCGTGGCTAATAATAATTGCCTATTACAGAGCCTA
TTACAGAGCCTATTACAGAGGTTAGACACACAGTAATCAGAAGCAACTTT
CTGGCCAAATTCGTAGCCAAGTCTTAGTTTTGAAAGTTGGCCCAAACACG
TTGTTAAGAAATGATAATTTTTTATTTGACAGCATTAATAGTATTATCAG
TATAAATATTAATATTAATATTATTATTAGTATTATTATTATAGTATTAA
TAGTAATTCAGGCGGGAAGATTACAGGTGTTGTATGGCCATACCATTTTA
GCTTTGGGTTGTTGTGTTGGGTACAGTATACGTTTTCGGACATTTGGTCC
TGATGACTATTATACTATTAATACTATAGTATACTATACTGTAGTATTAA
TAGTATAATAGTACTAGTGGGTAGCCACGGCTATTATACGCCCGTGTGAG
GTGTGCGTTGGCAGGACGATATACCGACGGAACGCGACACGGAGGTCGAA
CGCGGTCGAGCTACTGTGCGTGTCGCTGCTGTGTTTTCGCTGTTACAAAA
AAAAATCGCTCCACACAAACATCAAGTTGTTTGGCATCAGACAGCACAGC
ACCCTTGTCTACAATCAAAAATCAAAATCAAAATACACAATCGATCATTG
TTGCACTAAAAATAAGATAACAGTATTAGCATTATGTTTCTATATATATT
GTACATGTACTATAATAGAAACATAATAGTACTCGACTCGTACTACTGTC
TACCTCCGTAGCCGTAGTAAACATAGCTCAATTACTGTACCTGCCATACT
ATTAATATTAAGACTAACTATACCAACACCGCTGACACCTCGCCGCCCCG
GACAGGCAAGAGAATCGGCAAGCATTCGACATACATGTCTATGGTCAGTC
CGTGCTCTCCCGAGTGGCATCCGCGCTTACTCCATCCGAGCGAGCCAGGG
CGCAAAAGGCCGTCAAGGGAGCCAAAGAAAGGGTAAGCTCGAGGCATTCC
GCGCGCGGAGACCATCACATGCATACCGTGTATCACGCGCACAGCTGTTT
TGGTGGGGGTGGTACTGTACAGTGTACTGTATGCAAGGCAAAGTTTTTGT
ATGTCATTTTGGCGCGATTTTTGTTTGTTTGTACAGAGCCACGCGGAAAG
CGCGAGAGCGTGAGTAAAAGAAGAACCCGAGAAAAAGGCGAGCTTGCCGC
AGTGCCGAACCCAATGCATTTGCAACAAAAACCTAAGGTAAGAACATACC
GGGGATAAGATAAGATAAGATAAGATAAGAGAGACGGGATAACCCCTTGT
GACCACAGACGGGCCTCGGGAAGCATCGGTCTATCGTATGTGTGCAAAAA
ACAAAACAAAAAAGAGGCAGCTTGGTGTTGTATAGGGTATCGAGATTATG
ACGAGCCCTTGCTGTAGGCCCAAGTGCCGAGATGTTATTACGGAAGTACG
CTATTAATATGATTACTATCATACCATTAATACTAGTTGTGGAAATCATA
TACTTCGAAGTATCTAACAGTAGTTAATAGTATTACAGTAGTAGTATTAT
AGTGTGGGTACTGTACCCGGTTCTGTTCTGGGTAACGTTCCCGGTTCCCC
GATTGTGAGTTACGTCTCGTTGGGCCACGTCAGACCTGACCTTGAAGTAC
CTGTTGTGCCGCGTTGTGTCATGTCACACCCCGACTGGGCGCCGCTACTG
GACCAGTCCGCCCTATTATTAGAGCGCACTCGGGAACCTCCGACTACGTG
TACCTCTCCGGGATCTATTAATACTATAGTAATACTGTTAATACTATTAA
TACTACTACGAAGTATATTAATACTATTAATACTACAGTAATACCACTAT
AGAGCCCTCGTCACCACTGCTCCCCACCATGGGCCCACACTATTTATAGT
AATAATTACGGAGGTACACTATAATCAAGTAATAATCAAGTAATCAGGAC
CAAATATCATGACCATTAATACAATACAATACAATACAATAGCCAACTAT
TCCTATTAATACCGTGAGTGTTAGTGTACAAACAACAGAAATCCCATGAA
AACAAAAAGAAATGGCCATACACAACAACACCGACCTCGAAATCTCGATA
ATTCCATTAATATCCTATTTTATTAATATTTTGATTTTTCTAGGTTGAAA
CTTGTGGTAAATTTGGACCTGTTAAAGTAAAGTTAACCATCGTATATAAC
TATTCATATTAATATGGTCTAGTCCCCCGTAATAGCGCTAACACAGGATA
CTCAATGTTAATGTTGTACTTTTAGCGTATTCAAGTCTAACAAACCTTTT
TGGTACTAGCCCACTACACTGTTTGGAGCGCCGGTTAGCACGTAATGAGG
CGTTCTTGAAGCGGAGCCGTGGGGAACCCCATGGGTGATGACGCAGGAAT
GAGAGAGAACGGAGCCCAAGGGAAGCGAGGCTGTAGCTGTCAACTGGCAT
CGAGTGGGATTTTGGTCGTCTTAGAGGGCCCTAGTACTACTGTTAATAAT
ATATTAATTATAATACCATGCTACTATTAATATTAATACTACTATTACAG
CGGCCCGAACACTTTGTGACGCATTTGTTTAGTTTTTTATTTTGCAAATC
TTGTAAGGCCAGATTACAATTATGTGTGTTTTACTATAACATGCTGGATA
TACTATGTACTATGTACTATGTACTATATACGTTTTGGCGCGTTTGGCCC
TGATTTACTCTTGGAAACTACTATTAATAGTACTGTCTACCTCCTGCTTG
AATCATAAGTTGTTGTGTCTTTTCTGATTCCGACCGTTTGTATTCATTAT
TTCTCGTGTGCTTTTATTGATATTGATAGTTCATTGGGTTTGATCGATTT
ATCGACTTCGTTTTCTGAGCACGAGCGGTATCCGCGACCATTGGCGGGCA
GGCCAGGCCAGGTGTGGTTGCAACAAGTGCGATAATCAACCAAAATCAAT
GGAAAAACTAATCAATGCAGATACCAGGTCCCTTCGATAGTACATACTCG
GAGTATTATATTACATATTATATGACATCCCCTTGAGGATACTGTATAAA
CAACAGACGCCCCTACTCTACTTTACATCCTCAAGGGGATGCCATACCGG
GGGAACCTGGTATCCACATAAAATAAAATCAAACCAAATCAAATCAATTT
CCACCAACGTATCGTATATTGATGGACACAAGCGTGCCCGCCATTGCTGG
ACTTCCATGATACTGGTAACTGCACCAGGTGGCTGACAAGTCGACTCCGA
GCAGAGAGGAGAAGAGCGAGGACGTTGAGCCGGACTTGCCCCTGGTCGAC
TTTGGTGCGGTGGCGGGTGGGAAGGAGCGCTATGATGTGTGTCGCCTCTT
CCTGGCCTCCCTTCAGCTGGTGAGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13451:275..6249+

>mRNA_S-dermatodea_contig13451.2028.1 ID=mRNA_S-dermatodea_contig13451.2028.1|Name=mRNA_S-dermatodea_contig13451.2028.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at S-dermatodea_contig13451:275..6249+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCGAGGAGTTCCTCGCCGAATCGGCGTCGTCCATGGTGAAATCATCCTC
CGCCAACGGCACCACCAACGCTAACGACTTGGACGACTTCAAAGATGGCT
ACGGCTCGGACGGGGGCTACAGCAGCGACGGGGGCGGGGGCGGGGGAGGA
GACTACGGCGGGTTTAGCGACGCGGAAGGCGGGGGGTACATGGATGCCGG
GGGGGGCCGTGACGGAGAGGGAGGGGGTGACGTCAGCGTGGCCCCGATAT
CTCTGGAGGATGCTTTCCGCGACAAGCCGCAGACGTACGAGGACCTCTGC
CGGAGCCATATCCGCGAGGAGTTCCTCGCCGAATCGGCGTCGTCCATGGT
GAAATCATCCTCCGCCAACGGCACCACCAACGCTAACGACTTGGACGACT
TCAAAGATGGCTACGGCTCGGACGGGGGCTACAGCAGCGACGGGGGCGGG
GGCGGGGGAGGAGACTACGGCGGGTTTAGCGACGCGGAAGGCGGGGGGTA
CATGGATGCCGGGGGGGGCCGTGACGGAGAGGGAGGGGGTGACGTCAGCG
TGGCCCCGATATCTCTGGAGGATGCTTTCCGCGACAAGCCGCAGACGTAC
GAGGACCTCTGCCGGAGCCATATCGAGGCGTTTATGCGTGGAACCGAGAA
GTACGCGCACGAGACAAACCTCTCCAAACGGGTCGGCGCGTGGCAGGAGA
AGCTCGAGCCGCTCATGCGCAGGAGGCGTTTATGCGTGGAACCGAGAAGT
ACGCGCACGAGACAAACCTCTCCAAACGGGTCGGCGCGTGGCAGGAGAAG
CTCGAGCCGCTCATGCGCAGGCAAGAGAATCGGCAAGCATTCGACATACA
TGTCTATGGTCAGTCCGTGCTCTCCCGAGTGGCATCCGCGCTTACTCCAT
CCGAGCGAGCCAGGGCGCAAAAGGCCGTCAAGGGAGCCAAAGAAAGGGCA
AGAGAATCGGCAAGCATTCGACATACATGTCTATGGTCAGTCCGTGCTCT
CCCGAGTGGCATCCGCGCTTACTCCATCCGAGCGAGCCAGGGCGCAAAAG
GCCGTCAAGGGAGCCAAAGAAAGGGTGGCTGACAAGTCGACTCCGAGCAG
AGAGGAGAAGAGCGAGGACGTTGAGCCGGACTTGCCCCTGGTCGACTTTG
GTGCGGTGGCGGGTGGGAAGGAGCGCTATGATGTGTGTCGCCTCTTCCTG
GCCTCCCTTCAGCTGGTGAGCGTGGCTGACAAGTCGACTCCGAGCAGAGA
GGAGAAGAGCGAGGACGTTGAGCCGGACTTGCCCCTGGTCGACTTTGGTG
CGGTGGCGGGTGGGAAGGAGCGCTATGATGTGTGTCGCCTCTTCCTGGCC
TCCCTTCAGCTGGTGAGC
back to top