mRNA_S-dermatodea_contig13442.2020.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13442.2020.1
Unique NamemRNA_S-dermatodea_contig13442.2020.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13442.2020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13442contigS-dermatodea_contig13442:3467..3754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924286.1945856-CDS-S-dermatodea_contig13442:3466..35911622924286.1945856-CDS-S-dermatodea_contig13442:3466..3591Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13442 3467..3591 +
1694079151.5759506-CDS-S-dermatodea_contig13442:3466..35911694079151.5759506-CDS-S-dermatodea_contig13442:3466..3591Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13442 3467..3591 +
1622924286.2038944-CDS-S-dermatodea_contig13442:3603..37541622924286.2038944-CDS-S-dermatodea_contig13442:3603..3754Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13442 3604..3754 +
1694079151.5891962-CDS-S-dermatodea_contig13442:3603..37541694079151.5891962-CDS-S-dermatodea_contig13442:3603..3754Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13442 3604..3754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13442.2020.1prot_S-dermatodea_contig13442.2020.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13442 3467..3754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13442.2020.1

>prot_S-dermatodea_contig13442.2020.1 ID=prot_S-dermatodea_contig13442.2020.1|Name=mRNA_S-dermatodea_contig13442.2020.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=92bp
WHTYDRLSFPRSICGHKGPSHLSPVLTFDFYRASGSALPQLADLSDFAYS
RSRAFRSGGRENIQISLCRGSNPGPPLAGLLVTSLTTGRGM*
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mRNA from alignment at S-dermatodea_contig13442:3467..3754+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13442.2020.1 ID=mRNA_S-dermatodea_contig13442.2020.1|Name=mRNA_S-dermatodea_contig13442.2020.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=288bp|location=Sequence derived from alignment at S-dermatodea_contig13442:3467..3754+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGCACACATATGACAGACTTTCTTTTCCGAGGTCCATCTGTGGTCACAA
GGGACCATCCCATCTCTCCCCGGTTCTCACCTTTGATTTTTATCGCGCAT
CGGGTTCGGCACTCCCGCAGCTCGCCGATTTATCGGTCGATTTATCGGAT
TTTGCTTACTCACGCTCTCGCGCTTTCCGCAGCGGAGGTAGAGAAAATAT
ACAAATATCACTCTGCCGGGGTTCGAACCCCGGTCCTCCGCTTGCTGGGC
TGTTGGTCACCAGTTTAACCACGGGGCGCGGTATGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13442:3467..3754+

>mRNA_S-dermatodea_contig13442.2020.1 ID=mRNA_S-dermatodea_contig13442.2020.1|Name=mRNA_S-dermatodea_contig13442.2020.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at S-dermatodea_contig13442:3467..3754+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGCACACATATGACAGACTTTCTTTTCCGAGGTCCATCTGTGGTCACAA
GGGACCATCCCATCTCTCCCCGGTTCTCACCTTTGATTTTTATCGCGCAT
CGGGTTCGGCACTCCCGCAGCTCGCTGGCACACATATGACAGACTTTCTT
TTCCGAGGTCCATCTGTGGTCACAAGGGACCATCCCATCTCTCCCCGGTT
CTCACCTTTGATTTTTATCGCGCATCGGGTTCGGCACTCCCGCAGCTCGC
CGATTTATCGGATTTTGCTTACTCACGCTCTCGCGCTTTCCGCAGCGGAG
GTAGAGAAAATATACAAATATCACTCTGCCGGGGTTCGAACCCCGGTCCT
CCGCTTGCTGGGCTGTTGGTCACCAGTTTAACCACGGGGCGCGGTATGTA
GCGATTTATCGGATTTTGCTTACTCACGCTCTCGCGCTTTCCGCAGCGGA
GGTAGAGAAAATATACAAATATCACTCTGCCGGGGTTCGAACCCCGGTCC
TCCGCTTGCTGGGCTGTTGGTCACCAGTTTAACCACGGGGCGCGGTATGT
AG
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