mRNA_S-dermatodea_contig13423.2014.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13423.2014.1
Unique NamemRNA_S-dermatodea_contig13423.2014.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13423.2014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13423contigS-dermatodea_contig13423:5441..6508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924285.616251-CDS-S-dermatodea_contig13423:5440..55901622924285.616251-CDS-S-dermatodea_contig13423:5440..5590Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13423 5441..5590 +
1694079151.111485-CDS-S-dermatodea_contig13423:5440..55901694079151.111485-CDS-S-dermatodea_contig13423:5440..5590Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13423 5441..5590 +
1622924285.62583-CDS-S-dermatodea_contig13423:6385..65081622924285.62583-CDS-S-dermatodea_contig13423:6385..6508Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13423 6386..6508 +
1694079151.124655-CDS-S-dermatodea_contig13423:6385..65081694079151.124655-CDS-S-dermatodea_contig13423:6385..6508Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13423 6386..6508 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13423.2014.1prot_S-dermatodea_contig13423.2014.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13423 5441..6508 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13423.2014.1

>prot_S-dermatodea_contig13423.2014.1 ID=prot_S-dermatodea_contig13423.2014.1|Name=mRNA_S-dermatodea_contig13423.2014.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=91bp
MQALNSEGSTGDVAAEQEYPSPPPPPPALASSGSNSSGARMSPGLAARMQ
ALGDASSGSTGGKLSRDNSDGAGGGTGRAQKMEGVGLPGMG
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mRNA from alignment at S-dermatodea_contig13423:5441..6508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13423.2014.1 ID=mRNA_S-dermatodea_contig13423.2014.1|Name=mRNA_S-dermatodea_contig13423.2014.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1068bp|location=Sequence derived from alignment at S-dermatodea_contig13423:5441..6508+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGCGCTGAACTCTGAAGGTTCGACGGGGGATGTTGCGGCGGAGCA
AGAATACCCCTCCCCCCCCCCGCCCCCGCCTGCTTTGGCCTCGTCGGGGT
CGAACTCCTCTGGTGCCAGGATGTCTCCGGGGCTGGCGGCTCGCATGCAG
GTCGGTGGATCGTAAGGTTAAGCTGATTGGTCGTTCGTAAGGTTAAGCCG
ATTGGTCGATCGTAAGGTTAAGCCGATTGGTCATTCGTAAGGTTGAGCCG
ATTGGTCGATCGTAAGGTTAAGCCGATTGGTCGTGCCTATGTTGAAGCCG
ATTTCTCGATCGTACGGTCAAGCCGATTGGTCGATCGTAAGGTTAAGCCG
ATTGGTCGTGCCTATGTTTAAGCCGATTGCTCGATCGTACGGTCAAGCCG
ATTGCTCGATCGTAAGGTTAAGCCGATTGGTCGTGCCTATGTTTAAGCCG
ATTGCTCGATCGTAAGGCTAAGCCGATTGCTCGATCGTTACACACAGGCC
GATCTGTGGGTCCGTCGGTTGTTGTGCGGATCGGCGTTTGTTTTTTGTGT
GTGTGCAGGATGCTTTGGTCGGGCTATAGATTGGCGGGGGGGTGCGGGGA
GTGGGGGGGGGGGGGGGGGGGGGGGGGGCGCGGCCCCCCTTTGAAGTGGG
GGTGGGATTGTTTGGTCCTGTTTGGGTGTGTATGTATGTATGCATTTAAG
CACGTGTTGCATATATGTATGATATGCATTGTACGAAGCCATTGTCTCGC
TCGTCTCGTCTTACAGGTTTGCGCCTGGTCCTCGAACGCAGCCTAATTCA
CACACACCACACCACACCACGCACACCGTTTCATGTAGCATGTGCAAAAT
ATTGCTTTGTTGCTGCAACAAGCCCACCGCCCTCAAAACATGTCGGTCGC
TCGATTTCGTCGTGTGTGTGTGTGTGTGGGGGGGGGGGGGCGCAGGCTTT
GGGAGACGCGTCGAGTGGTTCGACCGGGGGAAAATTGAGTCGCGATAATA
GCGATGGGGCTGGCGGCGGGACGGGGCGCGCCCAAAAGATGGAAGGCGTG
GGCTTGCCGGGGATGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13423:5441..6508+

>mRNA_S-dermatodea_contig13423.2014.1 ID=mRNA_S-dermatodea_contig13423.2014.1|Name=mRNA_S-dermatodea_contig13423.2014.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at S-dermatodea_contig13423:5441..6508+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAGGCGCTGAACTCTGAAGGTTCGACGGGGGATGTTGCGGCGGAGCA
AGAATACCCCTCCCCCCCCCCGCCCCCGCCTGCTTTGGCCTCGTCGGGGT
CGAACTCCTCTGGTGCCAGGATGTCTCCGGGGCTGGCGGCTCGCATGCAG
ATGCAGGCGCTGAACTCTGAAGGTTCGACGGGGGATGTTGCGGCGGAGCA
AGAATACCCCTCCCCCCCCCCGCCCCCGCCTGCTTTGGCCTCGTCGGGGT
CGAACTCCTCTGGTGCCAGGATGTCTCCGGGGCTGGCGGCTCGCATGCAG
GCTTTGGGAGACGCGTCGAGTGGTTCGACCGGGGGAAAATTGAGTCGCGA
TAATAGCGATGGGGCTGGCGGCGGGACGGGGCGCGCCCAAAAGATGGAAG
GCGTGGGCTTGCCGGGGATGGGGGCTTTGGGAGACGCGTCGAGTGGTTCG
ACCGGGGGAAAATTGAGTCGCGATAATAGCGATGGGGCTGGCGGCGGGAC
GGGGCGCGCCCAAAAGATGGAAGGCGTGGGCTTGCCGGGGATGGGG
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