mRNA_S-dermatodea_contig13423.2013.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13423.2013.1
Unique NamemRNA_S-dermatodea_contig13423.2013.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13423.2013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13423contigS-dermatodea_contig13423:2246..5392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_002460.1
Hectar predicted targeting categoryother localisation
Exons2
Model size272
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924285.581283-CDS-S-dermatodea_contig13423:2245..23501622924285.581283-CDS-S-dermatodea_contig13423:2245..2350Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13423 2246..2350 +
1694079151.0911095-CDS-S-dermatodea_contig13423:2245..23501694079151.0911095-CDS-S-dermatodea_contig13423:2245..2350Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13423 2246..2350 +
1622924285.5898995-CDS-S-dermatodea_contig13423:5227..53921622924285.5898995-CDS-S-dermatodea_contig13423:5227..5392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13423 5228..5392 +
1694079151.1021166-CDS-S-dermatodea_contig13423:5227..53921694079151.1021166-CDS-S-dermatodea_contig13423:5227..5392Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13423 5228..5392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13423.2013.1prot_S-dermatodea_contig13423.2013.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13423 2246..5392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13423.2013.1

>prot_S-dermatodea_contig13423.2013.1 ID=prot_S-dermatodea_contig13423.2013.1|Name=mRNA_S-dermatodea_contig13423.2013.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=90bp
GGSDGIDSSGGKSWGRPPSTPAPAESPLSEPEPKEASASDSATGSVEIPD
DSDPSNAPPPPTVKGGDSPRVSSGLAARMQAMKLSTASTG
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mRNA from alignment at S-dermatodea_contig13423:2246..5392+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13423.2013.1 ID=mRNA_S-dermatodea_contig13423.2013.1|Name=mRNA_S-dermatodea_contig13423.2013.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3147bp|location=Sequence derived from alignment at S-dermatodea_contig13423:2246..5392+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGGCAGCGACGGGATTGACTCTTCCGGCGGGAAGTCGTGGGGTAGACC
TCCGTCCACGCCCGCGCCGGCCGAGTCTCCGCTCTCTGAGCCTGAGCCTA
AGGAGGTGGGAGGGGGGATATCGCTCAGGACAGAACACACTTGTACCATA
ACGATATACTACTGTAGTACTAGTACGAAGTATATATTCAGCATCATACG
TGACATGAAACCATAGCATCATACGTAACAAGTGAGCCTAGCCTCCGCCT
AGGTGTAGCTTGGACCATCTTCATCTTCCCTTTTAAAAGGTCGGACCCCA
GCGTTCGCGGCTTTTTTTTTTTTTTTCGTTTTTTTTTAGGGGAGGGACCC
CAACGCTCACTGTATGCCTTGTGTGCTCACGACGTTGTGTGTGTATTATA
TGATACTTTATACTTCGAAGTATGTATTGAAGTAGTTTTTTTTTTTTTTG
CTTCGCTCGGATCGTGCCATTCATAATATTTCGATCTCTAGAGCTCTACA
AGTGCAAGTATCTTGTTTGCGTTTCCAACAGCTAGTCGGGTCGGATTTCC
AGCACCTCCAGTGGTACTGTACAGTAGTATTATAGGCTCTATCATAGTGT
TATATTAATACAGTAGTATGATAACCTATCGGCTCTACAGTACGTGTGAC
AAAGAGATGGAAATGTCAACCGAAATATTACACATACTGTACATCAATTA
TATGAAATGCGTCTGCTGTCTGGTGGCTGCAGGCGTATCATAGCTGGCTG
TGCCTTTCGGCCAATCTGCCTTTCCACGTGAGGATATTTTGTACCAGGTA
AACAGTACTGCCTGTATTAATATAATAGTATCGTACGATGCGGAAAGTCG
GAGATTGGTGCGTATAACGTTGATTCCATTTTTTTTTTAAATCTAGTTGT
CGCGTAGCGTACGCACGCAGTACTGTAGCACGTAGCCTACGCGAACCGAG
CGGTGTTCATGACCTCTTTGTTTTTTTTTTTGATAAAAACCTATTAAAAA
GGCAAGGCAAAAACCGGGGATATGATATCATAAGGAAGAGGGGATTATCC
CCTTGTGTGACCACATACGGAGTTCGGAAAAAGCCGGCCTGTCTTGCCAT
GCGTGTTCGACAACAATAACAAAAAAGGGAGAATATTGCAAAGGTCGTGA
GTGTAGTGCACAGGTACACGTGTATCACGTGTACCAAGGGAGTGTAGAGT
GTAGAGTGTAACTGATTGTACTGATTGTACTGGCCTCTGAAGTTACACGT
GTACACGGTGTATTGGTTGTACTTGCCTCGGAAATTACACATGTGCACGG
TGTACTGATCGTACTTGCCTCCGAAATTACACGTGTACACAGTGTACTGA
TTGTACTCGTCTCCGAAATTACACGTGTACACGGTGTGCCTGATTGCACG
CGTGTCCTAAATTACACCTACACCTACACCTACACTACACCCACGACCTT
TGGAAGATTGTTGCTCTTCCCCCCAGCATGGGCTCTTCAAATTGTGCACG
GTGTGGCTCGACCCGCGCGGCGCTCGCTAGCCACTATCGTAGCGCTCAAG
TACGTTACAGTAGGTACAACTGATTTGACAGCAGCTCTACACCGGCGAGA
TGTTGGGGAGCTGAACGAAAACAAGTTGTTTGGTTGCATGATTGTTTTGC
ACACGTTTAGCCTATCGAGTTAATCCGAGCCAACGTGTGGTCAGATGCTG
CTACGTATGAGAGCAAAAGAGCCAAGGGGCGAAAACTAAATCGGAAATCT
ACTGTTCTTGTTATTGGCACACATATTAATATGATAGACTTGCTTTTCCG
AGGTCCGTCTGTGGTCACAAGGGATCATCCCATCTCTCTTATCCCCGGTT
CTCACCTTTGATTTTTATTGCGCATTGGGTTCGGCACTCCCACAGCTCTA
TGGCCGATTTCTCGTGCTTTTTGCGTACTCACCCTCTCGCGCTTTCCGCT
ACTTGCATGTACATTATACAGCAAAATCTACCCTGGTACTTACAAGAGAG
AAGACATTAGCAACGCCAGACTTCCTTATTAATTAATACAAGAGTCAACC
ATTTTTTTATACCAATCAATTCCAATACCCCGCTATTCATAGCGATTTAG
AGTGTCCCATTGTTCAAGTAAAAACTTTAGAGTGTCCCATTTTGTTCAAG
TAAAAACACCAAAGACCCTTTTTTCAAGTAAAACCTCACGGGCGACAGCC
GTGCCTTGCAACTAGTATACTATTCAAAGTACCACGGTATAAAACACCGC
CACAAGAGGAATCGGAATCGGACAGTCGGACAATACTCCCTCGCCTCTTA
ACCTTATCATATTCATATATTACGAAGTAGTACAGCCAGCTCCAGCGCGG
AGGCGCGGACACGAGAGAGAGAGAGGAAATAGACGGAAGGAAGGAAGGAA
GACAGAACGACAGGCCAAGAGAAGAGAAGAGCCTTCTTGTTTTTTTAAAG
AAAACAAGTAAAGAAGAAAAATAACAACTCGACAAAAACCTGAGGCGTGC
ATGCACCGGGGAGAGGTAGGTTGATCGGTCGACCCCTCGTGACGACAGAC
GAGACTCAGACTACCCCGATCGGTCGAATGCGAGGTACCACACATCAGGT
ACACCGTACACACACACACACACACACACATACCCATGCCGCGTTACCGA
CGATAGTGACTGATGGATTGATTGATTTGATTTGATTGTCACAGTTACAA
TTGGCTGCCGATCCAGCTTATCCCGCTTCCGGTCTCGCTCATGGTCACAT
GACAAATCGAGAAATCGAAAAAGCCCTACTAATAATACGGAATTTGTTTT
TAGTTTTTACGAGATTGATATACAATACAATTCAATACAATACAATACAA
GCATATTTTTACCTATCATCGGGAAAGGCAGAGGCTTGATCCGAAAAATC
TCTTGGTTTGAAGTCCAACAACACCCCTCGCCTAAGAACATCCATCACAC
ATTCCACCCCCTCGTCCCAATGGTTGAAGCAGGCGTCCGCCTCCGATTCA
GCCACGGGGTCGGTGGAGATCCCCGACGATAGCGACCCCTCTAATGCCCC
TCCCCCTCCGACCGTCAAGGGCGGAGACTCTCCACGGGTGTCTTCCGGGT
TGGCCGCTCGGATGCAGGCCATGAAGCTTAGCACGGCATCCACCGGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13423:2246..5392+

>mRNA_S-dermatodea_contig13423.2013.1 ID=mRNA_S-dermatodea_contig13423.2013.1|Name=mRNA_S-dermatodea_contig13423.2013.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at S-dermatodea_contig13423:2246..5392+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCGGCAGCGACGGGATTGACTCTTCCGGCGGGAAGTCGTGGGGTAGACC
TCCGTCCACGCCCGCGCCGGCCGAGTCTCCGCTCTCTGAGCCTGAGCCTA
AGGAGGGCGGCAGCGACGGGATTGACTCTTCCGGCGGGAAGTCGTGGGGT
AGACCTCCGTCCACGCCCGCGCCGGCCGAGTCTCCGCTCTCTGAGCCTGA
GCCTAAGGAGGCGTCCGCCTCCGATTCAGCCACGGGGTCGGTGGAGATCC
CCGACGATAGCGACCCCTCTAATGCCCCTCCCCCTCCGACCGTCAAGGGC
GGAGACTCTCCACGGGTGTCTTCCGGGTTGGCCGCTCGGATGCAGGCCAT
GAAGCTTAGCACGGCATCCACCGGAGCGTCCGCCTCCGATTCAGCCACGG
GGTCGGTGGAGATCCCCGACGATAGCGACCCCTCTAATGCCCCTCCCCCT
CCGACCGTCAAGGGCGGAGACTCTCCACGGGTGTCTTCCGGGTTGGCCGC
TCGGATGCAGGCCATGAAGCTTAGCACGGCATCCACCGGA
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