mRNA_S-dermatodea_contig1342.2012.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1342.2012.1
Unique NamemRNA_S-dermatodea_contig1342.2012.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1342.2012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1342contigS-dermatodea_contig1342:9888..10387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size500
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924285.5436366-CDS-S-dermatodea_contig1342:9887..102621622924285.5436366-CDS-S-dermatodea_contig1342:9887..10262Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1342 9888..10262 +
1694079151.0728462-CDS-S-dermatodea_contig1342:9887..102621694079151.0728462-CDS-S-dermatodea_contig1342:9887..10262Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1342 9888..10262 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924285.554482-UTR-S-dermatodea_contig1342:10262..103871622924285.554482-UTR-S-dermatodea_contig1342:10262..10387Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1342 10263..10387 +
1694079151.0815372-UTR-S-dermatodea_contig1342:10262..103871694079151.0815372-UTR-S-dermatodea_contig1342:10262..10387Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1342 10263..10387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1342.2012.1prot_S-dermatodea_contig1342.2012.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1342 9888..10262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1342.2012.1

>prot_S-dermatodea_contig1342.2012.1 ID=prot_S-dermatodea_contig1342.2012.1|Name=mRNA_S-dermatodea_contig1342.2012.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=125bp
AVRPTLQRGGERLPISPKTPPHTHTHTERAGGPEKRPQSSKRFKGDTCPA
PYFASNSYFYSNHGYLTLRPCILVAGKKAASCHGCIARICTVLALVRWCR
EVVTAPLVAIVTTLSAKTESVSKG*
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mRNA from alignment at S-dermatodea_contig1342:9888..10387+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1342.2012.1 ID=mRNA_S-dermatodea_contig1342.2012.1|Name=mRNA_S-dermatodea_contig1342.2012.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=500bp|location=Sequence derived from alignment at S-dermatodea_contig1342:9888..10387+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGTGCGTCCGACACTCCAGAGAGGCGGAGAGCGACTTCCTATCAGCCC
AAAGACTCCACCACACACACACACACACACCGAGCGGGCGGGTGGACCCG
AAAAACGACCTCAGAGTTCCAAAAGGTTTAAGGGGGACACCTGCCCCGCC
CCTTATTTCGCGTCGAACAGCTACTTCTACTCAAACCACGGCTATCTTAC
TCTTCGCCCTTGTATCCTAGTGGCAGGTAAGAAAGCGGCCTCGTGCCACG
GTTGTATAGCTCGCATATGCACGGTGCTGGCGCTGGTGCGCTGGTGCCGT
GAAGTCGTTACCGCACCACTCGTAGCAATAGTAACGACGCTAAGCGCCAA
AACGGAATCGGTGTCAAAAGGGTGAAGGGCGGCTGAAGCGTGGCGCGTTT
CGCTTCATCAAACAACGCCGCCGAGGAACGTCTGTAACACGCATGTTTGC
CTCTTATCATGGGGGTAACAATAAGCGGCCCGGAGGAAGGGGGGGTGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1342:9888..10387+

>mRNA_S-dermatodea_contig1342.2012.1 ID=mRNA_S-dermatodea_contig1342.2012.1|Name=mRNA_S-dermatodea_contig1342.2012.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at S-dermatodea_contig1342:9888..10387+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGTGCGTCCGACACTCCAGAGAGGCGGAGAGCGACTTCCTATCAGCCC
AAAGACTCCACCACACACACACACACACACCGAGCGGGCGGGTGGACCCG
AAAAACGACCTCAGAGTTCCAAAAGGTTTAAGGGGGACACCTGCCCCGCC
CCTTATTTCGCGTCGAACAGCTACTTCTACTCAAACCACGGCTATCTTAC
TCTTCGCCCTTGTATCCTAGTGGCAGGTAAGAAAGCGGCCTCGTGCCACG
GTTGTATAGCTCGCATATGCACGGTGCTGGCGCTGGTGCGCTGGTGCCGT
GAAGTCGTTACCGCACCACTCGTAGCAATAGTAACGACGCTAAGCGCCAA
AACGGAATCGGTGTCAAAAGGGTGAGCCGTGCGTCCGACACTCCAGAGAG
GCGGAGAGCGACTTCCTATCAGCCCAAAGACTCCACCACACACACACACA
CACACCGAGCGGGCGGGTGGACCCGAAAAACGACCTCAGAGTTCCAAAAG
GTTTAAGGGGGACACCTGCCCCGCCCCTTATTTCGCGTCGAACAGCTACT
TCTACTCAAACCACGGCTATCTTACTCTTCGCCCTTGTATCCTAGTGGCA
GGTAAGAAAGCGGCCTCGTGCCACGGTTGTATAGCTCGCATATGCACGGT
GCTGGCGCTGGTGCGCTGGTGCCGTGAAGTCGTTACCGCACCACTCGTAG
CAATAGTAACGACGCTAAGCGCCAAAACGGAATCGGTGTCAAAAGGGTGA
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