mRNA_S-dermatodea_contig13415.2009.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13415.2009.1
Unique NamemRNA_S-dermatodea_contig13415.2009.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13415.2009.1 vs. uniprot
Match: D7G8V8_ECTSI (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V8_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.770e-21
Identity = 55/88 (62.50%), Postives = 68/88 (77.27%), Query Frame = 2 
Query:    2 YALRLLSDAGVL-ERLTPMNFITLGSPHLGSLKSSGGMVGRMVDNESAEQLSLKDTDIQR----GGVTRDTYGVGGANSARRGSAYGG 250
            YALRLL+DAGV  +R++ M+FITLG+PHLGSL S GGM GR++DNE+ EQL  KDTD++R    GGV+R+ YGVGG  SA  G A GG
Sbjct:  275 YALRLLNDAGVFSDRVSGMHFITLGTPHLGSLLSGGGMAGRVMDNETKEQLFFKDTDMRRDGDNGGVSREEYGVGG--SAGAGGARGG 360
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BLAST of mRNA_S-dermatodea_contig13415.2009.1 vs. uniprot
Match: A0A835YY83_9STRA (Putative serine esterase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY83_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.010e-8
Identity = 29/61 (47.54%), Postives = 45/61 (73.77%), Query Frame = 2 
Query:    2 YALRLLSDAGVLE-RLTPMNFITLGSPHLGSLKSSGGMVGRMVDNESAEQLSLKDTDIQRG 181
            +AL+ L + GVL  RL+P+NFIT G+PHLG+L S+ G++G +++  ++ QL LKD D + G
Sbjct:   74 FALKRLYERGVLGGRLSPINFITFGTPHLGTLTSAAGVMGALIEGRTSAQLKLKDGDERFG 134
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13415.2009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8V8_ECTSI1.770e-2162.50Fibronectin type-III domain-containing protein n=1... [more]
A0A835YY83_9STRA1.010e-847.54Putative serine esterase-domain-containing protein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13415contigS-dermatodea_contig13415:296..6745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size260
Cds size219
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13415.2009.1prot_S-dermatodea_contig13415.2009.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13415 336..6745 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924285.3261974-UTR-S-dermatodea_contig13415:295..3351622924285.3261974-UTR-S-dermatodea_contig13415:295..335Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13415 296..335 -
1694079150.943721-UTR-S-dermatodea_contig13415:295..3351694079150.943721-UTR-S-dermatodea_contig13415:295..335Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13415 296..335 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924285.3354504-CDS-S-dermatodea_contig13415:335..3771622924285.3354504-CDS-S-dermatodea_contig13415:335..377Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13415 336..377 -
1694079150.9537506-CDS-S-dermatodea_contig13415:335..3771694079150.9537506-CDS-S-dermatodea_contig13415:335..377Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13415 336..377 -
1622924285.3456376-CDS-S-dermatodea_contig13415:2874..29541622924285.3456376-CDS-S-dermatodea_contig13415:2874..2954Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13415 2875..2954 -
1694079150.9635751-CDS-S-dermatodea_contig13415:2874..29541694079150.9635751-CDS-S-dermatodea_contig13415:2874..2954Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13415 2875..2954 -
1622924285.3540845-CDS-S-dermatodea_contig13415:6648..67451622924285.3540845-CDS-S-dermatodea_contig13415:6648..6745Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13415 6649..6745 -
1694079150.9729896-CDS-S-dermatodea_contig13415:6648..67451694079150.9729896-CDS-S-dermatodea_contig13415:6648..6745Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13415 6649..6745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13415.2009.1

>prot_S-dermatodea_contig13415.2009.1 ID=prot_S-dermatodea_contig13415.2009.1|Name=mRNA_S-dermatodea_contig13415.2009.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=73bp
VRAEAAERRRGAGATDPYELHHARIAPPRVAQVQRWHGRAHGGQRVRRAA
QPQGHRYSKRRRNARHVRGRRS*
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mRNA from alignment at S-dermatodea_contig13415:296..6745-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13415.2009.1 ID=mRNA_S-dermatodea_contig13415.2009.1|Name=mRNA_S-dermatodea_contig13415.2009.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6450bp|location=Sequence derived from alignment at S-dermatodea_contig13415:296..6745- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTACGCGCTGAGGCTGCTGAGCGACGCCGGGGTGCTGGAGCGACTGACCC
CTATGAACTTCATCACGCTCGGATCGCCCCACCTCGGGTCGCTCAAGGTG
CCACAATTTTGGAGTCTGTGACGTTATTAATAGCTATTAATAGCATGCTA
GCTCGTGTTGTGTACAGTACGTACATGCTGTAGATGTCGGGATGATTGAA
CCGAACACTTGATCGCCCCTTTTGGCAATGAATACATCCGTTTTGCGCGG
GTATCGTCGCAGTATATAGTACCATATATCGTAGCCACCGTTCGGGTACT
CTACCTTTTCAATGTCAAATGCTAATAGAGTTTATAATATATAGTAGCCA
CCGTTCGGGTACTCTACCTTTTCGATGTTAAATACTAATATATAGTATAT
AGTAGCCACCGTTCGGGTACTGTACCTTTTCGATGTCAAATACTATTATA
GTATATAGTATATAGTAACCACCGTTCGGGTACTGTACCTTTTCCATGTA
AAATATGGTGCGGGCAGATATGGCTTAACCCTGCAAACAGGCTATAGTAG
GTCTGAAACGGGCTAAGAAGGGAGCTAGCTGTGTGTGGCACCTTTGTCTA
TAATTTAGATTGGAGCTTTGATGCAAAAAATTGAGGCCGACGTATGGAGA
AGAGTATATGTAGTCTCTAATACCTACCAGTACCTGGTATGCACTTTTGA
GTAACCGCTTTGACCGTCCCTTTTCTTTTTTTTTGCACACATACGACAGA
CTCTCTTTCTTATCCCGGATTCTCACCTTTGATTTTATATGGCGTATGCA
TTGGGTTCGGCACTCCCACAGCTCTATAGCCGATCTCTCGGATTTTTGTG
TTGTTGCTTACTCACGCTGTCGCGCTTTCCGCGGCGGAGGGAAAAATAGC
GAATCGTTATTTTAACTGTTACGGAGGGACCATACCACAGTTAACAGGTC
CAAACTTGTCACAAATCTTAAACCTTTTGGGACTAAAGCTGTTTTCGGGT
ATCTGTTTGCTATTCATATTTACCCTTTTGGGACTAACCTTGGTGACGAA
GCCTGTTTTCGGGTAACTGTTGGCTACCATAATAGCAAAAACAGTTACCC
GAAAACAGCACTAGTCCAAAAACAAAAGGATATGTAGTATTATAATAGCA
AACAGTTACCCGAAAACAGCCTTAGTCCCAAAAGGGTTAAACTTAGTTAT
CACGGTCGGTGTTTGTCGGTGTTGTGTTTTGGCTCTTGAGTTTTTTTTGT
GTTGTTTGGGTATATTGTATTTTATGGTGTGATTTTTTGTCCTGGTTACT
CTGTACCTCCCTAATATCTTACTGTAGTAATTAATACGACAAGGAACCAT
TTTTAATAGCGATTTAGAGTAGCGATTTGAGGCCAATTTTTCGCAAACTC
GTACCCGATTTTTTGTGTGATTTTTTAGGCCGATTTCGTATACTAAACTC
CTACTTCGAAGTACACAATTTTGTGATTTTTAGTGCGATCGCTCGCCTCA
CGGGCGCAGCCGTCACTACCTATTATACTAGTTTTAGTATTAACCCTTTT
GGGACTAAAGCTGTTTTCGGGTAACTGTTTGCTATTATTATTTACCCTTT
TGGAACTAAGCCTGGGGACTAGTGCTGTTTTCGGGTAACTGTTGGCTACC
ATATTAGCAAACAGTTACCCGAAAACAGCACTAGTCCAAAAACAAAAGGA
TATGTAATATTATAATAGCAAACAGTTACCCGAAAACAGCCTTAGTCCCA
AAAGGGTTAATAGTAGGTATCACGGTCGGTGTTTGTCGGTGTTGTGTTTT
GGCTCTTGAGTTTTTGTTGTGTTGTTTGGGTGTATTGTATTTTATGGTGT
GATTTTTTGTCCTGGTTACTCTGTACCTCCCTAATATCTTCTTAATTAAT
ACTACAAGGAACCATTTTTAATATTATAGCGATTTAGATTAGCGATTTGA
GGCCAATTTTTCGCAAACTCGTACCCGATTTGTTGTGTGATTTTTTAGGC
CGATTTCGTATACTAAACTCCTACTTCGAAGTATACAATTTTGTGCTTTT
TAGTGCGGTCGCTCGCCTCACGGGCGCAGCCGTCACTACCTACTATTAAA
GTTTTACTATTAACCCTTTTGGGACTAAAGCTGTTTTCGGGTAACTGTTT
GCTATTATTTACCCTTTTGGAACTAAGCCTGGGGACTAGTGCTGTTTTCG
GGTAACTGTTGGCTACCATATTAGCAAACAGTTACCCGAAAACAGCACTA
GTCCAAAAACAAAAGGATGCATAATGGTGGCAAACAGTTACCCGAAAACA
GTCTTAGTCCCAAAAGGGTTAATAGTAGGTATAATTTAGGCCACGCCCGT
AAGGTGCAAAATCGAGTTGTTTGGCGCTCAACACAAACATCAAGTTGTTT
GGCATCGCGTTTTGGCGACAGACACAAATCGTATAGGATTCGTGTTACAG
AGTCGTATAGGAAATTGTGTTGGCATGGTTATACTCAGGTAAATCGCTGC
AAGTATTGAAAAACTCACTATTAACATTACAAAAAGCGGTATTGAAGTAT
TATGCTACGGTAAGAATACAGGTGTGATAAAATGATGGTATCATACAAGT
GTCTCTATGAACAAGTTTCTTGCCGATTTCAACCATGAAGAAACAAATTG
TGGATGGATATGTTTTTGAAGCATACAAGTACTTGTACGGTGCAGTAATT
ACTCGATGGGCTTGTGCTTTTTTGGGGCTCAGGCGCCCGTGCAATAAAGT
AATGGTATAATATTATACTATACACTGTTTCCCGGTATGATATTCCGTAC
CGTACAGCATATGGGAGGTGTTGATTGTTTGCTAATTTTGTGTCGGTGTA
TTGGGACCCCCCGTGGGATGTTGCGAGGTCTATCGTCTAATGGTCTAACG
ACTACGGCAAGCACGATCAATGAGTACACACCCCCCTAAAAAATTAAACA
TTTCAGAAACAAAGAGCGAGCGTTGGGGTCCCACCTTTTCAAGAGGGAAG
ATGGTCCAAGCTACACTACACCTATGGAGGCTAGGCTCACTTGTTACATA
TGATGCTATGGTGTCGTAGTATCAGTATGATGCCCCCCCCCCCCCCCCGG
GATGTTCTTGTTGCCGTGGTGTGCTTCTTTTTCCTTCCCTGTTTTTTTNN
NNNNNNNNATGAGACACTCCCTTTATGTGGGTTAGGTTCACTTGTTACTT
ATTTTGCTAGGTTGTTGTGGTTTAATTTTTTTTCCCCCCCCCCCCCGTGG
GATGTCCTTGTGCGCGTGTTGCGTTTCCTTTCCATGCCGTGTTTTTTCTT
TTTCTGCACATACTCTATCTACCTACCCTCTCGCCCTTCCTGCTCTCTGT
TGCTCTTGTTTCTGTATATTGCCCGTGGGGTTCGATGGTGTTTGTGTGTC
TAATTGCTTGCTACAAGTAGTTTTTTGTCGGTGTTTGGGACAGCGAGGTA
TACTGTACTGGTATGTCTTTGCTTTCCACCCCCCCCCCCCCCCCCCCCCC
CCCCCCCTCCCTTCTCTTTTTTTTTTTTTTTTTTTGCTCGATGGAGTTTT
TGGTCTGTGTTTGTTTTTGGGGGTTATTTGGTATTTTTTTTTTTTTTTTT
TGCACCCCCCCCCCCCCCCCCTGTTTTTTTTGTTTTTTTTTCTGCACAGA
CGTCACCGACCTGTCTGTGTTGTTTACTCTATACCCTCGCCCTTCCTTCT
CTTTGACGCTCTTCTTTTTGTCTTTTATCCGTGTGGGGTTTTCGATCAAT
TGCCGTCTGCAAAAAAAAAAAAAAAAACTTTTTACGAACAGTCCAGCGGT
GGCATGGTCGGGCGCATGGTGGACAACGAGTCCGCCGAGCAGCTCAGCCT
CAAGGACACCGATATTCAAAGGTATGCTGCTCTTATGTTCTGTTATTGAT
ACCGTATGTTACAATTGAATTGAGAGCTACTGCTGTAAATGTAAATATGT
ACGGTTTGTGTTTTCTGAGTTGTTTTTTTAAGATCCGCTTGCTGAATACG
TTTAGTTTCCGAGTTTTATTTTTATTTTTGTATTTTGAGAGCTACTGCTG
TTATTTTTTTTATTTTTTTATTTTTTTCCAGAGCTACCACCCTATTATTA
TTAATTACATATTCAAGTGTTTCGCCCCGAGTGTATGTTGTCTTCTGACG
GAGCGGTATACAGCGGCTGAATATTTGACGCAGATCCTGCAGAACCATGA
AAACCAACAAACCTTGCTCAGCTCTCGAGTTCCCGCCTCTGGTAGATCCT
GCCTGACAACGGCATTCTTCGCCCCCACGGCATGGCTGCCGGAGCCCGGA
CAGTGGCTGGTTTTACCTGCTGGTCTCAATAGTTGCTGTGATGTATTGCT
GTCGCGCGAACAATGAAGACTACTGTAACAGCTGCCCGCAGGAGGCCGTG
TTGCCTGTTACCCGTATAATCGTGTGCCTGCTACCCTAGTAATTGTGCAT
GTTACCCTATTGCGGAAGTACACAGTAATCACGAACAAAATAGACTACTG
TAACAGCTGCCCGCAGGAGGCCGTGTTGCCTGTTACCCATATAATCGTGT
GCCTGTTACCCTATAATAGTAATTGTGCATGTTACCCTATTGCGGAGGTA
CACAGTAATCACGAACAAAAAAGACTGCTGTAAGAGCTGCATGCAGGAGG
CCGTGTTGCCTGTTACCCATATAATCGAGTGCCTGTTACCCTCTAATAGT
AATTGTGCATGTTACCCAATTGCGGAGGTACACAGTAATAGCGAGCAACA
AAGACTGCTGTAAGAGCTGCTGCCTGTGCGAGGCCGCGTTGCCTGTTAAC
CATATAATCGTGTGCCTGTTACCCATATAATCGTGTGCATGTTACCCTCA
TAATTTTGCATGCTACCCTATCATGGAGGTACACGGTAACCGGAACCAAA
TATCTGCTCAAACTGTGCGTGTATTATATTCGTGCGTTTTAGTATTGGCT
CGAATACCTTTAAATATTGTTGTTTAGGTTTATATTGACACTTCAGCCCG
GGAGATTGAGTCCGGATTACTAATGTACTATTAATACTGTCTACATCCGT
AATATATTTGTAATAGCTTTTGTTACCCATATAATCGTGTGCCTGTTACC
CTAGTAATTGTGCGTGTTACCCTAAGTACTACTGTAGTAGTTATAGTAAT
AGCGCTGCTTCCAGTTGTTCTTGCTGTCGTGGGCAGAAAAGAGCTGCCCT
TTTGCTCTTGATAACGTTGCCCGGCTGCTTCTATTGATAGCTTTTCGCCG
TCTCGCTCGCTTGACTTCGAGCTCGCGTTACGCGTGAGGGACGGGACGAC
TGCCGTCTTGAATGACGCACGAGAAAAAATACCCCCCAAAAAAAAAGGGA
CTTCAAACTATGATACATGGAGAACGCGTTGGAGTCCCACCTTTTTTTAC
ATGGAAAATTGTTCCAAGCCTACAGTATCTATGGTACACACCTATCGAGG
CTTACGTTGAGTATGATGCCCTTTCTCTCTTCCCCCACTCCCTAATCAAA
GGTAACGATTTCACTAACATATACTCCGTAGGATTTAGAGTGGGGCTCCC
ACTTGTCAGAAGGGAAGATGGTCCAAGCTTTTCACCTTACTCCATAGAGG
AGGCTCACTCGTTGCGTACCAGCACGATGCTATATTTTCACTATATTACA
GAGGACCGTAGATATCAGGTAAAAAATATATATCATGACGATGAAAACAA
TACAATACCCACCTCTTCCGAGCAGAAATTTCAAAACAACCAAAAACATT
GTCATGAAAAACAAAAAACACACACGAGATATGGCCAGTTTTACAAGAAC
ATGGACCTTGAAATCTCGATAATTCATAATTCCAGCCTGTTTTGTTTTTT
TCTGACCAGGAATTTCAAAACAACCAAAAACATGTCATGAAAAACAAAAA
AACACACACACGAGATATGGCCAGTTTTACAAGAACATCGACCTTGAAAT
CTCGAGAATTCATATAATTCCAGCCTGTTTTGGTTTTTTCTGACCAGGAA
TTTCAAAACAACCAAAAACATGTCATGAAAAACAAAAAAACACACACACG
AGATATGGCCAGTTTTACAATAACATCGACCTTGAAATCTCGAGAAGTCA
TAATTCCAGCCTGTTTTGGTTTTTTCTAGGTTGAGACTCGTGGCAAATTT
GGACCTGACTACTATACTGCACTTGTGGGCCTCCGTAAATAATTAGTAAT
GTGCATGACTTATGGTTTAATTGTTATGGCACAAGCGTCTTTGTCCTGAC
CGATACCCCCCTGGTAACACATCTTTCACGTGCTTTTGTGAGCCAACGAG
ATCTCTCCGCCAACCCCCTACCCCGCCCCGCCCCGCCCACAAAATATTTC
GAACACCAAACCTAACAGAGGAGGCGTAACGCGCGACACGTACGGGGTCG
GCGGAGCTAACAGCGCCAGGCGAGGATCCGCCTACGGGGGCCCCGGAGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13415:296..6745-

>mRNA_S-dermatodea_contig13415.2009.1 ID=mRNA_S-dermatodea_contig13415.2009.1|Name=mRNA_S-dermatodea_contig13415.2009.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at S-dermatodea_contig13415:296..6745- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTACGCGCTGAGGCTGCTGAGCGACGCCGGGGTGCTGGAGCGACTGACCC
CTATGAACTTCATCACGCTCGGATCGCCCCACCTCGGGTCGCTCAAGGTA
CGCGCTGAGGCTGCTGAGCGACGCCGGGGTGCTGGAGCGACTGACCCCTA
TGAACTTCATCACGCTCGGATCGCCCCACCTCGGGTCGCTCAAGTCCAGC
GGTGGCATGGTCGGGCGCATGGTGGACAACGAGTCCGCCGAGCAGCTCAG
CCTCAAGGACACCGATATTCAAAGTCCAGCGGTGGCATGGTCGGGCGCAT
GGTGGACAACGAGTCCGCCGAGCAGCTCAGCCTCAAGGACACCGATATTC
AAAGAGGAGGCGTAACGCGCGACACGTACGGGGTCGGCGGAGCTAAAGGA
GGCGTAACGCGCGACACGTACGGGGTCGGCGGAGCTAA
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