mRNA_S-dermatodea_contig13415.2008.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13415.2008.1
Unique NamemRNA_S-dermatodea_contig13415.2008.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13415.2008.1 vs. uniprot
Match: A0A6H5KZX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZX8_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 5.150e-26
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    7 GGNRPPILAKMTGEDFLAPLRQFQRRVLYANAKAEGSVEYSSASVRFDDPYVYVPDEDL 183
            GG+RPP+LA+MTGEDFLAPLR FQRRVLYAN K +G+VEY SASVR DDPYVYVPD DL
Sbjct:   78 GGSRPPVLARMTGEDFLAPLRMFQRRVLYANVKMDGTVEYPSASVRIDDPYVYVPDTDL 136
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BLAST of mRNA_S-dermatodea_contig13415.2008.1 vs. uniprot
Match: D7G8V8_ECTSI (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V8_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 9.080e-25
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    7 GGNRPPILAKMTGEDFLAPLRQFQRRVLYANAKAEGSVEYSSASVRFDDPYVYVPDEDL 183
            GG+RPP+LA+MTGEDFLAPLR FQRRVLYAN K +G+VEY SASVR DDPYVYVPD DL
Sbjct:  389 GGSRPPVLARMTGEDFLAPLRMFQRRVLYANVKMDGTVEYPSASVRIDDPYVYVPDTDL 447
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13415.2008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZX8_9PHAE5.150e-2681.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8V8_ECTSI9.080e-2581.36Fibronectin type-III domain-containing protein n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13415contigS-dermatodea_contig13415:83..268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue8.9e-21
Seed eggNOG ortholog2880.D7G8V8
KEGG koko:K02737
KEGG Pathwayko03050,map03050
KEGG ModuleM00340
EggNOG free text desc.acylglycerol lipase activity
EggNOG OGsKOG4372@1,KOG4372@2759
EC3.4.25.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924285.3813753-CDS-S-dermatodea_contig13415:82..2681622924285.3813753-CDS-S-dermatodea_contig13415:82..268Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13415 83..268 -
1694079150.9834616-CDS-S-dermatodea_contig13415:82..2681694079150.9834616-CDS-S-dermatodea_contig13415:82..268Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13415 83..268 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13415.2008.1prot_S-dermatodea_contig13415.2008.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13415 83..268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13415.2008.1

>prot_S-dermatodea_contig13415.2008.1 ID=prot_S-dermatodea_contig13415.2008.1|Name=mRNA_S-dermatodea_contig13415.2008.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=62bp
DAGGNRPPILAKMTGEDFLAPLRQFQRRVLYANAKAEGSVEYSSASVRFD
DPYVYVPDEDL*
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mRNA from alignment at S-dermatodea_contig13415:83..268-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13415.2008.1 ID=mRNA_S-dermatodea_contig13415.2008.1|Name=mRNA_S-dermatodea_contig13415.2008.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at S-dermatodea_contig13415:83..268- (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGCGGGCGGCAACAGGCCCCCGATTTTGGCGAAGATGACCGGCGAGGA
CTTCCTGGCGCCCCTGAGGCAGTTCCAGCGCCGCGTGCTGTATGCTAACG
CTAAGGCGGAGGGCTCGGTGGAGTATTCCAGCGCAAGCGTCCGCTTCGAC
GACCCTTACGTTTACGTTCCCGACGAGGACTTGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13415:83..268-

>mRNA_S-dermatodea_contig13415.2008.1 ID=mRNA_S-dermatodea_contig13415.2008.1|Name=mRNA_S-dermatodea_contig13415.2008.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at S-dermatodea_contig13415:83..268- (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGCGGGCGGCAACAGGCCCCCGATTTTGGCGAAGATGACCGGCGAGGA
CTTCCTGGCGCCCCTGAGGCAGTTCCAGCGCCGCGTGCTGTATGCTAACG
CTAAGGCGGAGGGCTCGGTGGAGTATTCCAGCGCAAGCGTCCGCTTCGAC
GACCCTTACGTTTACGTTCCCGACGAGGACTTGTGAGATGCGGGCGGCAA
CAGGCCCCCGATTTTGGCGAAGATGACCGGCGAGGACTTCCTGGCGCCCC
TGAGGCAGTTCCAGCGCCGCGTGCTGTATGCTAACGCTAAGGCGGAGGGC
TCGGTGGAGTATTCCAGCGCAAGCGTCCGCTTCGACGACCCTTACGTTTA
CGTTCCCGACGAGGACTTGTGA
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