mRNA_S-dermatodea_contig134.1998.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig134.1998.1 vs. uniprot
Match: D7FTF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF1_ECTSI) HSP 1 Score: 350 bits (897), Expect = 2.390e-102 Identity = 358/571 (62.70%), Postives = 414/571 (72.50%), Query Frame = 2
Query: 2213 IRQMLDLMHTCAASAG-SQSEDSINDRVQGGPPSTVSGRGSTEWGP-GGGETGIVQAYNHVIRVCGNAGGAELALALVEEMLDRGVTPNANSYSNAIIACDLSGMWAEAVALLDDMRDNAGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRARGIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRADMAEDS----LNDSAEGASNRWGQE------TE---------LPSPRVTVAALTACARGGEWRRALDILREIQEKSG-----KSG-GDG--------IWLHFGRASSLAFNAGLVACAKGAEAEAAVGRDGGWREAVEILNMMGRSPDLTSYGCAITACGFGGNVEACIGLLGEMLERNMTPTLADYYAALRACATRRREDAAQEVLESMASEGVEADARCYRFAAEAFREAGDASSEASAEMDRFLEVAK--EMEARAAIGRESRDRGGGFD----------MGDLDLTGSSELEMLLEGAAGEPDWLEPG 3784
+ +LDLMH C A A + + IN ++GG S G +WGP GG +G+VQAYNHVIR CG AGG E LAL++EM RGV P+A SYS AIIACDL+GMW EAV LLDDMR+ XXXXXXXXXXXXXXXXXXXXXXXXX M RG+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Q+ ADMA DS DS GA R E TE LP PR TVAALTACARGG+W +A+ ILR++Q KSG +SG GDG W +FG+ASSLAFNA LVACAKGAE EAA GR+GGWREA+E+L+M+G PDLT YG AITACGF NV+AC+GLLGEML R+MTPTLADY+ +LRACA RRR+DAAQE+L+SM SEGVE DARCYRFAAEAF ++GD ++AS E + F ++A+ E+EA + R GGG D + D+ ++G++ LE LL AG+ ++ G
Sbjct: 52 LLDILDLMHACEARAQPADNPPGINGALEGGRESVG---GDADWGPDGGSSSGLVQAYNHVIRACGAAGGTEFVLALLQEMHRRGVPPDAASYSGAIIACDLAGMWREAVGLLDDMREKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVETMGERGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYDQMVADMAADSSASSAGDSEAGAHQRRKGESGVSSRTEGVSKGPGVLLPPPRATVAALTACARGGQWEKAVGILRDVQNKSGGLEADRSGSGDGSSVGGRSGAWTYFGQASSLAFNAALVACAKGAEMEAAEGREGGWREALEVLDMVGPCPDLTGYGLAITACGFANNVDACVGLLGEMLRRDMTPTLADYHGSLRACAARRRDDAAQEILDSMGSEGVEPDARCYRFAAEAFGKSGD-GNDASPEAEHFSKIAERLELEAAGTVPRRHGGSGGGGDGAISGGLDEALSDMGMSGTAGLEELLA-KAGDAEFRSVG 617
BLAST of mRNA_S-dermatodea_contig134.1998.1 vs. uniprot
Match: A0A6H5J961_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J961_9PHAE) HSP 1 Score: 233 bits (594), Expect = 1.300e-61 Identity = 307/558 (55.02%), Postives = 362/558 (64.87%), Query Frame = 2
Query: 2213 IRQMLDLMHTCAASAG-SQSEDSINDRVQGGPPSTVSGRGSTEWGP-GGGETGIVQAYNHVIRVCGNAGGAELALALVEEMLDRGVTPNANSYSNAIIACDLSGMWAEAVALLDDMRDNAGLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXMRARGIYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRADMAEDSLNDSAE-------------GASNRW-----GQETELPSPRVTVAALTACARGGEWRRALDILREIQEKSGK--------------SGGDGIWLHFGRASSLAFNAGLVACAKGAEAEAAVGRDGGWREAVEILNMMGRSPDLTSYGCAITACGFGGNVEACIGLLGEMLERNMTPTLADYYAALRACATRRREDAAQEVLESMASEGVEADARCYRFAAEAFREAGDASSEASAEMDRFLEVAKEMEARAAIGRESRDRGG-----------GFD--MGDLDLTGSSELEMLL 3745
+ +LDLMH CAASA + + N ++GG S G WG GG +G+VQAYNHVIR CG AGGAE LAL++EM RGV P+A SYS IIACDL+GMW EAV LLDDMR XXXXXXXXXXXXXXXXXXXXXXX M RG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX Q+ ADMA D+ SA+ G S+R G LP PR TVAALTACARGG+W +A+ ILR++Q +G+ +GG G+ +F +ASSLAFNA LVACAKGAE EAA GR+GGWREA+E+L+M+ S LLG + R R+DAA+E+L+SMASEGVE DARCYRFAAEAF ++GD ++AS E ++F ++A+ +E AA G++ R G D + D+ ++G++ LE LL
Sbjct: 80 LLDVLDLMHACAASAQPADNPPGFNRTLEGGRESVG---GDAHWGADGGSSSGLVQAYNHVIRACGAAGGAEFVLALLQEMHRRGVPPDAASYSGGIIACDLAGMWREAVGLLDDMRQETXXXXXXXXXXXXXXXXXXXXXXXXXXSIVETMGKRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLYDQMVADMAADASASSADYEAEAYQPRRGESGVSSRTEGVSKGPGVLLPPPRATVAALTACARGGQWEKAVGILRDVQNNTGRVEVDRSGSGDHSSGNGGSGVCTYFNQASSLAFNAALVACAKGAEMEAAEGREGGWREALEVLDMVSGS------------------------LLGASI-------------------IRARDDAAREILDSMASEGVEPDARCYRFAAEAFGQSGD-GNDASPEAEQFSKIAERLELEAA-GKDPRRXXXXXXXXDGAISCGLDEALSDMGISGTAGLEELL 589
BLAST of mRNA_S-dermatodea_contig134.1998.1 vs. uniprot
Match: D7FTF0_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF0_ECTSI) HSP 1 Score: 197 bits (501), Expect = 2.090e-50 Identity = 280/415 (67.47%), Postives = 306/415 (73.73%), Query Frame = 2
Query: 242 GAPRGRGDGGERA----------------LLQVFIEDMKAATAKGSWKEALRVVGGAKASGLRLDGRAHTAVAHAALNADGAEATLGAIADMRADGYVPNISLYNKAISLCGRQRRWEDGVFLLRDAQLAAAKA-RWEVDVVTYSAAVAACRNGGEWRQALSLMEEMQASGIKPDQIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMRPAASRVPTLARTRLVATGKPLPSSAGDSR---SVSTLVGIGHDVCISGEQVTAAGGRRGGAGMRGGH-PRADVFTWSGAMTACIEGGQWDRVAGMLEDMRSDQVHPN 1423
G RG+G+GG R + ++ +KA+ A GSW+EAL V ++SGL+LDGR HTA AAL+ A L IA MRADG+VPNISLYNKAISLCGRQ WED VFLLRDAQ ++ R VDVVT+SAAVAACR+GGEWRQAL+LMEEMQA+GIKPDQIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TMRP R T P S+ DSR S +TL G + S + + GGR PRADVFTWS AMTACIEG QW +VAGMLE+MR D V PN
Sbjct: 2 GVGRGKGEGGGRTGRXXXXXXXXXSSSSRESRALVDRVKASAASGSWEEALAHVAEVRSSGLKLDGRVHTAAIRAALDGGKARPVLATIAAMRADGFVPNISLYNKAISLCGRQGAWEDAVFLLRDAQRVSSPGQRRGVDVVTFSAAVAACRDGGEWRQALALMEEMQAAGIKPDQIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTMRPPRPRARPSPGTPPGFLPSSDPPSSYDSRRVHSAATLPTDGVEANDSIDGLKNGGGRLSXXXXXXXXGPRADVFTWSAAMTACIEGDQWQKVAGMLEEMRGDGVPPN 416
BLAST of mRNA_S-dermatodea_contig134.1998.1 vs. uniprot
Match: A0A6H5J994_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J994_9PHAE) HSP 1 Score: 104 bits (259), Expect = 2.560e-21 Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 2
Query: 509 KAISLCGRQRRWEDGVFLLRDAQLAAAKARWE-VDVVTYSAAVAACRNGGEWRQALSLMEEMQASGIKPDQI 721
+AISLCGRQ WED +FLLRDAQ ++ + VDVVTYSAAVAACR+GG+WRQAL+LMEEMQA+GIKPDQI
Sbjct: 9 QAISLCGRQGGWEDAIFLLRDAQRLSSPGQLRGVDVVTYSAAVAACRDGGQWRQALALMEEMQAAGIKPDQI 80 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig134.1998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig134.1998.1 >prot_S-dermatodea_contig134.1998.1 ID=prot_S-dermatodea_contig134.1998.1|Name=mRNA_S-dermatodea_contig134.1998.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=1163bp MKAATAKGSWKEALRVVGGAKASGLRLDGRAHTAVAHAALNADGAEATLGback to top mRNA from alignment at S-dermatodea_contig134:9548..29477- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig134.1998.1 ID=mRNA_S-dermatodea_contig134.1998.1|Name=mRNA_S-dermatodea_contig134.1998.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=19930bp|location=Sequence derived from alignment at S-dermatodea_contig134:9548..29477- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig134:9548..29477- >mRNA_S-dermatodea_contig134.1998.1 ID=mRNA_S-dermatodea_contig134.1998.1|Name=mRNA_S-dermatodea_contig134.1998.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=6978bp|location=Sequence derived from alignment at S-dermatodea_contig134:9548..29477- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |