mRNA_S-dermatodea_contig13382.1988.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13382.1988.1
Unique NamemRNA_S-dermatodea_contig13382.1988.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13382.1988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13382contigS-dermatodea_contig13382:1797..2454 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924283.5282907-CDS-S-dermatodea_contig13382:1796..18351622924283.5282907-CDS-S-dermatodea_contig13382:1796..1835Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13382 1797..1835 -
1694079149.5508554-CDS-S-dermatodea_contig13382:1796..18351694079149.5508554-CDS-S-dermatodea_contig13382:1796..1835Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13382 1797..1835 -
1622924283.536792-CDS-S-dermatodea_contig13382:2133..24541622924283.536792-CDS-S-dermatodea_contig13382:2133..2454Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13382 2134..2454 -
1694079149.5605338-CDS-S-dermatodea_contig13382:2133..24541694079149.5605338-CDS-S-dermatodea_contig13382:2133..2454Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13382 2134..2454 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13382.1988.1prot_S-dermatodea_contig13382.1988.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13382 1797..2454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13382.1988.1

>prot_S-dermatodea_contig13382.1988.1 ID=prot_S-dermatodea_contig13382.1988.1|Name=mRNA_S-dermatodea_contig13382.1988.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
VEIRPPSISGTPGRAKEHAKSAEDVPVDILMDQRVADTLEKTQRSRRYGG
GQLGIVMDKATLMSGNRATFGGGIWASGASVLAVGGEVEVRGNVAGGLRE
GCEEDAKESCGGRGGGMFVD
back to top

mRNA from alignment at S-dermatodea_contig13382:1797..2454-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13382.1988.1 ID=mRNA_S-dermatodea_contig13382.1988.1|Name=mRNA_S-dermatodea_contig13382.1988.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=658bp|location=Sequence derived from alignment at S-dermatodea_contig13382:1797..2454- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGAGATTAGGCCGCCTTCAATCTCGGGGACGCCGGGACGGGCAAAGGA
GCATGCAAAAAGTGCCGAAGACGTGCCCGTCGATATCTTGATGGATCAAC
GCGTGGCGGACACGCTGGAGAAGACTCAGCGAAGTAGGCGTTACGGTGGC
GGGCAGCTTGGGATCGTTATGGACAAGGCGACATTGATGTCGGGGAATCG
AGCGACGTTTGGAGGCGGAATTTGGGCGTCCGGGGCATCGGTTTTGGCGG
TCGGCGGGGAGGTTGAGGTTCGGGGCAACGTCGCAGGAGGCCTTCGAGAA
GGGTGCGAAGAAGATGCGAAGGTAATTCATGCAAAGTACACGTTCCCTTC
GAGGCTAATTGTCGTACTATGAACGTCCTGTGCGCGGTGTTTTGGGGGTG
CAGGGAGCGTACTGTTACTCGCCGGTGCTGCTTGATAGTGCGGGCGTGGC
AGTATTATGCCCGTGCCCCTGGCGTCGCTAGAATGTTGGTGTCGGCCATG
CTTTCGGTGTATTTTTTGGAAGTACCGCAGCACCCACACTCCGCTCTCTG
CCAGCCACAGGATGATGTGATGTACCTCAATGTTTGCATCCCCGGCGATG
CGTTCTTTCGTATGTTCAGGAGAGTTGCGGCGGTCGTGGCGGCGGAATGT
TCGTCGAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13382:1797..2454-

>mRNA_S-dermatodea_contig13382.1988.1 ID=mRNA_S-dermatodea_contig13382.1988.1|Name=mRNA_S-dermatodea_contig13382.1988.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig13382:1797..2454- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGAGATTAGGCCGCCTTCAATCTCGGGGACGCCGGGACGGGCAAAGGA
GCATGCAAAAAGTGCCGAAGACGTGCCCGTCGATATCTTGATGGATCAAC
GCGTGGCGGACACGCTGGAGAAGACTCAGCGAAGTAGGCGTTACGGTGGC
GGGCAGCTTGGGATCGTTATGGACAAGGCGACATTGATGTCGGGGAATCG
AGCGACGTTTGGAGGCGGAATTTGGGCGTCCGGGGCATCGGTTTTGGCGG
TCGGCGGGGAGGTTGAGGTTCGGGGCAACGTCGCAGGAGGCCTTCGAGAA
GGGTGCGAAGAAGATGCGAAGGTGGAGATTAGGCCGCCTTCAATCTCGGG
GACGCCGGGACGGGCAAAGGAGCATGCAAAAAGTGCCGAAGACGTGCCCG
TCGATATCTTGATGGATCAACGCGTGGCGGACACGCTGGAGAAGACTCAG
CGAAGTAGGCGTTACGGTGGCGGGCAGCTTGGGATCGTTATGGACAAGGC
GACATTGATGTCGGGGAATCGAGCGACGTTTGGAGGCGGAATTTGGGCGT
CCGGGGCATCGGTTTTGGCGGTCGGCGGGGAGGTTGAGGTTCGGGGCAAC
GTCGCAGGAGGCCTTCGAGAAGGGTGCGAAGAAGATGCGAAGGAGAGTTG
CGGCGGTCGTGGCGGCGGAATGTTCGTCGACGAGAGTTGCGGCGGTCGTG
GCGGCGGAATGTTCGTCGAC
back to top