mRNA_S-dermatodea_contig1338.1986.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1338.1986.1
Unique NamemRNA_S-dermatodea_contig1338.1986.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1338.1986.1 vs. uniprot
Match: A0A6H5JWE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWE2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.910e-22
Identity = 50/103 (48.54%), Postives = 66/103 (64.08%), Query Frame = 2 
Query:    2 MIPQFVTIPPGRSHWFEIPRCGTKICSKREAAVCIATETVGSDGGTRMRMEAMVQLRTNKILLVNLPVENGRVRGIPAASESGGVLAQAMRVLSNQANALPRS 310
            ++PQ VTIPPG SHW E+PR G    S R+A V I TE    + G RMR+EA+  LR+  +L V L V  G+V G P A+E+GG+L+Q MR + N  NA P +
Sbjct:  351 LVPQMVTIPPGHSHWIEVPRVGAGFRSSRKAVVMIVTELNDENDGKRMRLEAVEHLRSRTMLTVTLRVSEGKVIGSPVAAEAGGILSQLMRAIQNDVNATPNN 453
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BLAST of mRNA_S-dermatodea_contig1338.1986.1 vs. uniprot
Match: A0A6H5L6Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.620e-5
Identity = 31/65 (47.69%), Postives = 43/65 (66.15%), Query Frame = 2 
Query:    5 IPQFVTIPPGRSHWFEIPRCGTKICSKREAAVCIATETVGSDGGTRMRMEAMVQLRTNKILLVNL 199
            +PQ V IPPG SHWFEIPR        R+A V IA+E  G D   +M+++A+V LR++ +L V+L
Sbjct:   94 VPQMVVIPPGHSHWFEIPRATGGSFFSRKAMVVIASE--GED--PKMQLQAVVLLRSSTLLTVSL 154
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BLAST of mRNA_S-dermatodea_contig1338.1986.1 vs. uniprot
Match: D7G1B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B6_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 3.340e-5
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:    5 IPQFVTIPPGRSHWFEIPRCGTKICSKREAAVCIATETVGSDGGTRMRMEAMVQLRTNKILLVNLPVENGRVRG 226
            I Q V IPPG SHWFEIPR        R+A V IA+E  G D   +M+++A+V LR++ +L V+L   + R RG
Sbjct:   73 IRQVVVIPPGHSHWFEIPRVAGGSFFSRKAMVVIASE--GED--PKMQLQAVVHLRSSTLLTVSLG-PSSRTRG 141
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1338.1986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JWE2_9PHAE2.910e-2248.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6Z9_9PHAE1.620e-547.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1B6_ECTSI3.340e-545.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1338contigS-dermatodea_contig1338:8692..9401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size710
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1338.1986.1prot_S-dermatodea_contig1338.1986.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1338 8693..9007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924283.375405-UTR-S-dermatodea_contig1338:8691..86921622924283.375405-UTR-S-dermatodea_contig1338:8691..8692Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1338 8692..8692 +
1694079149.4082494-UTR-S-dermatodea_contig1338:8691..86921694079149.4082494-UTR-S-dermatodea_contig1338:8691..8692Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1338 8692..8692 +
1622924283.3921587-UTR-S-dermatodea_contig1338:9007..94011622924283.3921587-UTR-S-dermatodea_contig1338:9007..9401Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1338 9008..9401 +
1694079149.434609-UTR-S-dermatodea_contig1338:9007..94011694079149.434609-UTR-S-dermatodea_contig1338:9007..9401Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig1338 9008..9401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924283.3841538-CDS-S-dermatodea_contig1338:8692..90071622924283.3841538-CDS-S-dermatodea_contig1338:8692..9007Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1338 8693..9007 +
1694079149.4230278-CDS-S-dermatodea_contig1338:8692..90071694079149.4230278-CDS-S-dermatodea_contig1338:8692..9007Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1338 8693..9007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1338.1986.1

>prot_S-dermatodea_contig1338.1986.1 ID=prot_S-dermatodea_contig1338.1986.1|Name=mRNA_S-dermatodea_contig1338.1986.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
MIPQFVTIPPGRSHWFEIPRCGTKICSKREAAVCIATETVGSDGGTRMRM
EAMVQLRTNKILLVNLPVENGRVRGIPAASESGGVLAQAMRVLSNQANAL
PRSF*
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mRNA from alignment at S-dermatodea_contig1338:8692..9401+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1338.1986.1 ID=mRNA_S-dermatodea_contig1338.1986.1|Name=mRNA_S-dermatodea_contig1338.1986.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=710bp|location=Sequence derived from alignment at S-dermatodea_contig1338:8692..9401+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CATGATCCCTCAGTTCGTGACCATTCCTCCGGGAAGGAGTCATTGGTTCG
AGATTCCCCGATGCGGGACGAAGATCTGCTCGAAACGCGAGGCAGCTGTG
TGTATTGCTACAGAAACTGTTGGCAGCGACGGAGGGACGCGAATGCGGAT
GGAAGCAATGGTGCAGCTGCGGACAAACAAGATCCTTTTGGTTAACCTCC
CTGTCGAGAACGGTCGGGTTCGCGGAATCCCGGCCGCATCGGAGTCTGGT
GGAGTACTGGCTCAAGCAATGCGAGTCCTCAGCAATCAGGCAAACGCCCT
GCCACGCTCGTTCTAGACGGTGTCGTTCTGACGCTGTACGGCTCGAAAGG
CGGTTCTAGTTCGCCTCCGACAGCGGCCGAACAAGCCGGGTAGTGCCCGG
CAGCAGCCGGCGCAACCGAAGATTATGCGACAGCATTTAGCGAAGACGAA
GTTAAACAAGTTGTGCCGTGGGCGATCTTCTCTAATGAACATGCGGCAGG
CATATTCGCCGCCGTATGTGTTGTTGGCGTACATGAGAAGGTGGTGTTTG
GTAAGTGAAATGCAGGCAGCTATCGAATTTTCGCAACAGGAGTTTCGAAA
GTAGAACAGGGGTTCGTACAAACTGCATCGTAGCCTGTACACATTGTGGA
CGACGGACAATTTGACACCATATCGAAAAGGGGCGCCCATTCTGGCTGTG
TCTGATTGTC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1338:8692..9401+

>mRNA_S-dermatodea_contig1338.1986.1 ID=mRNA_S-dermatodea_contig1338.1986.1|Name=mRNA_S-dermatodea_contig1338.1986.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at S-dermatodea_contig1338:8692..9401+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCCCTCAGTTCGTGACCATTCCTCCGGGAAGGAGTCATTGGTTCGA
GATTCCCCGATGCGGGACGAAGATCTGCTCGAAACGCGAGGCAGCTGTGT
GTATTGCTACAGAAACTGTTGGCAGCGACGGAGGGACGCGAATGCGGATG
GAAGCAATGGTGCAGCTGCGGACAAACAAGATCCTTTTGGTTAACCTCCC
TGTCGAGAACGGTCGGGTTCGCGGAATCCCGGCCGCATCGGAGTCTGGTG
GAGTACTGGCTCAAGCAATGCGAGTCCTCAGCAATCAGGCAAACGCCCTG
CCACGCTCGTTCTAGATGATCCCTCAGTTCGTGACCATTCCTCCGGGAAG
GAGTCATTGGTTCGAGATTCCCCGATGCGGGACGAAGATCTGCTCGAAAC
GCGAGGCAGCTGTGTGTATTGCTACAGAAACTGTTGGCAGCGACGGAGGG
ACGCGAATGCGGATGGAAGCAATGGTGCAGCTGCGGACAAACAAGATCCT
TTTGGTTAACCTCCCTGTCGAGAACGGTCGGGTTCGCGGAATCCCGGCCG
CATCGGAGTCTGGTGGAGTACTGGCTCAAGCAATGCGAGTCCTCAGCAAT
CAGGCAAACGCCCTGCCACGCTCGTTCTAG
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