mRNA_S-dermatodea_contig13330.1974.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13330.1974.1
Unique NamemRNA_S-dermatodea_contig13330.1974.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13330.1974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13330contigS-dermatodea_contig13330:2051..4839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size271
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924282.5931616-CDS-S-dermatodea_contig13330:2051..22271622924282.5931616-CDS-S-dermatodea_contig13330:2051..2227Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13330 2052..2227 -
1694079148.8705308-CDS-S-dermatodea_contig13330:2051..22271694079148.8705308-CDS-S-dermatodea_contig13330:2051..2227Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13330 2052..2227 -
1622924282.6061296-CDS-S-dermatodea_contig13330:4745..48391622924282.6061296-CDS-S-dermatodea_contig13330:4745..4839Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13330 4746..4839 -
1694079148.893562-CDS-S-dermatodea_contig13330:4745..48391694079148.893562-CDS-S-dermatodea_contig13330:4745..4839Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13330 4746..4839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13330.1974.1prot_S-dermatodea_contig13330.1974.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13330 2052..4839 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13330.1974.1

>prot_S-dermatodea_contig13330.1974.1 ID=prot_S-dermatodea_contig13330.1974.1|Name=mRNA_S-dermatodea_contig13330.1974.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=90bp
ETDRTPHSRAWSSSVTHRYLAVRSVLFTEDTDRWDRRRKTTTQPARYTLH
GCIVPRGAGVNNPTKAMAKRSAAAAVSRRLPARRSSGCLC
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mRNA from alignment at S-dermatodea_contig13330:2051..4839-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13330.1974.1 ID=mRNA_S-dermatodea_contig13330.1974.1|Name=mRNA_S-dermatodea_contig13330.1974.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2789bp|location=Sequence derived from alignment at S-dermatodea_contig13330:2051..4839- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGACAGACCGAACACCCCACAGCAGAGCCTGGAGCAGCAGCGTTACACA
CCGTTACCTCGCTGTCCGGTCAGTACTTTTCACCGAAGACACAGGTGTGG
CAGGTTGCTTGAGTATCTCTGACACGTGTGGGAACACGATGGTCAAAATT
ATGTCGAGGCTTGTATATGTTCAATTCAGCCATGCAGCAGTCACGCCATG
TCGTGTTTGGTTTAGCCGCACAAATGTTGCGAGCTTGTTCCAGAATGCTG
TATGGCATTGAACGCCAAAGGCATACAAGTAGATAGTAGGGATCAGACAC
ATGGCCTGATTTGTGCTTGGCCTGTATCTTCTCCTAGGTTATCTTCGAAG
CAAAGCGGATCCCAGGCCTGTCGCCGAGACTTCCAGAGGTCCAGCAACTA
ATAGTCACTGCTGTATGATACGATACGATAGCAGTTAAATGTTTACGAGT
ATACTCTGTGCACATATGACAGCGATCGTTTTTATTTTCACCTTTCTTTT
GAGACTGAACCTGGTTTTCGGGGCCATGTTCCCACACCGTACAACAAGCA
AGTGCTTGTATCAAGTACTGTATCGTAATAGTATTTGATACAAGGAACTC
CGGAGTACTTTATACTGCTGTACTCATATTCGGAGCAAAAAGGCACACTC
TATTATTGTATTATAGAGTGCAGCTGCTGTAGTAGGCGAATCGAGGCAGT
GGAGCAACCTGGCGGAACAATGATACGTTGTACAAGTACTGCTGTGAGTC
CCACCCCCCAATTACCGTCATAATCGAGGTCAACAACCCCCCCACTGTCA
ACGACCTCTGTGTCATTTTGGGCCGATCTGACACATCTGCAAGTATCATA
GCGCGGGCGAAAACGACCCCGTATCCGGGGTCGGCGCTTCAACGGAGATA
ACCCCGACACAAGTACAGTACAAATACCGACCCCGGGACGAACATGGCGA
CGATCTGACGATCCAAACGCCCTGGGCTTGGCAACCCCTGGCGCGAGGTA
CTATACTCTCGTGCATATATATTTTTTTGCGCTTCGAGCTCGAAGCAGGC
TCGTCCCTTATATCAGGGCAAGCTTCCCCACGATTGATCTGTCTGTCTTC
TGCTCATTGTGGGCCTGCTCGTAGACGCTATGCAAACCGAGATCCGACAT
GTCCTCTGGCTAACTTTTCCCCTGCTAAACTGAAGAGTGCGTTGGGCCCT
GACGAGCCGTTCTTCCTATCGAACCGAGGTCTTTGTCGAACCCCCAAAAC
AAACGAAAGTTTTCTCGGAGAAATCGACCCGGTATTGGCGCCAACGATCC
GGCCTCCGCGTCTATACGGACGAACAAAGTTCCCTAGATCGTTGACCCCA
ACATTACACGGGAGTGTCATCTTGAAGCACATGGTGATCTAGGGGTTAAC
TCAATTCAAAAGCAAAAGTTGGTGCTACCGTTTCCGAGTTGCGGAGTAGT
GTAAGCCGTGGTGGATGCGTACTCAGCGTCTTTTAATCCGTAGCCGTTAT
CGAAACCCTGTGAAAAATAACTTAGGGCGTGTGATGGTACCTCATGTTGC
AATCGTGATTTTTGTTACTTGCACGTCATCGTGCACAAGGAGAATTAATC
TCCGTGAGCCGAGAGCATATCTTGTACAAGTATGCACAGGCGACCCAACC
GTGCCCCAGCGACTCTGCCTGTCATGTTGAACGATTTTTACATGCTCGGT
GCATCGACCTCACATGGCAAACTGCTGTATACGGCACCGCCTGCAGTTGC
ATATGTTCGCCAGCGTAAAATTTGGACCTCATACACGTTAGGTTCGACGT
AAATACCTCCCTTCAGTGCTTTCCTCCACACCCGTACCATACCGCGCGTG
TCCTCAGGCCACAGGCTTTTCAGGCCTCGTGAAATGTAACGTATGTATGG
CCCTATGCATGGCATCCGCTGTCCGAATTTTTTACATCGGTTTGATCACC
ACACTCCAACTAATATGATACACACTCTGCGGTCTGGCCTGTTGCATGCA
GTGAAACTCGTGCGTCCACCGCAATTGAACGCGGCTGTGAACACGACGCG
TGCGTTGTAGCTATTCGGGCCCTGTAGGACTCCTGTATGCCTACTCGTAC
TCCGTTAACATGCAAACTTGACCGAGGATCGAGGGGTGAAAAGGCCGAGC
ACACTTTGCTCGCTGCATCCGGTTCACCCATCGGTTCAGGAATCGTTCTT
GTCCTAATGCAGTTATTAATCCTATCGGTAGCTCTCTCATATGTACGTCG
TACTTCAACTCTCGTTCACAGAAACCAACGGGCTTCACGGGCCTTTCTTT
GGAAACCTCGCGACACATGGCCAAAATATATACCTGATGCAGTATATATG
ACTACGATTTATACTGTCCGATGCTGTGTCCGTGTTAGCTGCAAGCGAGA
CGCAGGTAAGAAATGCTCCCAAAGAACGAGCATCCTGCTCGTTCGTTAGC
GGCCGCAGGTCCCACTATTGCAGAAGCTCACACCGTTTACAATATACCTG
GTAGCACGTACGTGAAATACATGGAAGGGAAGGACAACTTGCCGGATCGG
TGCATGTGTTTCCCATCATCTCGACACTTGTGCGCATGGCGGTGTTCTCG
GTGTTCTTGCAGACCGTTGGGACCGCCGGAGGAAGACGACGACGCAACCT
GCCCGATACACATTGCATGGTTGCATTGTGCCGCGGGGTGCGGGGGTGAA
TAATCCGACGAAGGCGATGGCCAAACGGAGCGCAGCAGCAGCTGTCTCGC
GGCGGCTTCCAGCGCGGCGTTCTTCGGGCTGCCTCTGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13330:2051..4839-

>mRNA_S-dermatodea_contig13330.1974.1 ID=mRNA_S-dermatodea_contig13330.1974.1|Name=mRNA_S-dermatodea_contig13330.1974.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at S-dermatodea_contig13330:2051..4839- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGACAGACCGAACACCCCACAGCAGAGCCTGGAGCAGCAGCGTTACACA
CCGTTACCTCGCTGTCCGGTCAGTACTTTTCACCGAAGACACAGGAGACA
GACCGAACACCCCACAGCAGAGCCTGGAGCAGCAGCGTTACACACCGTTA
CCTCGCTGTCCGGTCAGTACTTTTCACCGAAGACACAGACCGTTGGGACC
GCCGGAGGAAGACGACGACGCAACCTGCCCGATACACATTGCATGGTTGC
ATTGTGCCGCGGGGTGCGGGGGTGAATAATCCGACGAAGGCGATGGCCAA
ACGGAGCGCAGCAGCAGCTGTCTCGCGGCGGCTTCCAGCGCGGCGTTCTT
CGGGCTGCCTCTGCACCGTTGGGACCGCCGGAGGAAGACGACGACGCAAC
CTGCCCGATACACATTGCATGGTTGCATTGTGCCGCGGGGTGCGGGGGTG
AATAATCCGACGAAGGCGATGGCCAAACGGAGCGCAGCAGCAGCTGTCTC
GCGGCGGCTTCCAGCGCGGCGTTCTTCGGGCTGCCTCTGC
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